Rmu_sc0002486.1_g000005

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002486.1
Physical Location & Seq
Reverse (-)
29536 .. 30410
875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002486.1_g000005.1.cds

Sequence Viewer

Length: 561 bp
atgtttgatgtggggcttattatcattctgtcacatttgggctgtttgagtgtaaacgcatctggaaatggaggtgaaatcggggaatgtcaggagggaagtggtgaagatagaagtggaggtggtgctcaagggtcgaaaggtaagcgtgggaggccgaaaggatcaaagaacaagaagaagatcattggagctgaaaagggaattgtagggttgagtggaattgccagtgtcattgtaggtggagaaaagagtgtaacgccgaagaggaagctaggtcgaccaaaaggtgccaagaataaaaagaaggctcttgcaaataatgaaaataggggtgtgcctaatgggcgtgaagaaagtggagaaaagagtgtaacgccgaagaggaagctaggtcgaccaaaaggtgccaagaataaaaagaaggctcttgcaaataatgaaaatgggggtgtgcctaatgggcgtgaagaaagtaaggtagtggttgggaatgttaggcatatcaagtactttctatttcttgcattgtctgaaagatcatatttgttgggtttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

19.5

Weight (kDa)

10.31

Isoelectric Point (pI)

31.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 290, 407
AccI GTMKAC 2 cut(s) 280, 397
AclWI GGATC 1 cut(s) 172
AfaI GTAC 1 cut(s) 512
AluBI AGCT 3 cut(s) 194, 274, 391
AluI AGCT 3 cut(s) 194, 274, 391
Alw21I GWGCWC 1 cut(s) 130
AlwI GGATC 1 cut(s) 172
AoxI GGCC 1 cut(s) 155
AsuHPI GGTGA 2 cut(s) 86, 116
BanI GGYRCC 2 cut(s) 290, 407
Bbv12I GWGCWC 1 cut(s) 130
BfaI CTAG 2 cut(s) 275, 392
BglI GCCNNNNNGGC 2 cut(s) 346, 463
BmcAI AGTACT 1 cut(s) 512
BmiI GGNNCC 2 cut(s) 292, 409
BmsI GCATC 1 cut(s) 68
BpuEI CTTGAG 1 cut(s) 114
Bse1I ACTGG 1 cut(s) 228
BseNI ACTGG 1 cut(s) 228
BshFI GGCC 1 cut(s) 157
BshNI GGYRCC 2 cut(s) 290, 407
BsiHKAI GWGCWC 1 cut(s) 130
BsnI GGCC 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 3 cut(s) 164, 183, 539
BspANI GGCC 1 cut(s) 157
BspLI GGNNCC 2 cut(s) 292, 409
BspPI GGATC 1 cut(s) 172
BspT107I GGYRCC 2 cut(s) 290, 407
BsrI ACTGG 1 cut(s) 228
BssMI GATC 3 cut(s) 164, 183, 539
Bst6I CTCTTC 2 cut(s) 260, 377
BstKTI GATC 3 cut(s) 167, 186, 542
BstMBI GATC 3 cut(s) 164, 183, 539
BstMWI GCNNNNNNNGC 3 cut(s) 154, 346, 463
BsuRI GGCC 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 235
Csp6I GTAC 1 cut(s) 511
CviJI RGCY 8 cut(s) 16, 42, 157, 194, 274, 311, 391, 428
CviKI_1 RGCY 8 cut(s) 16, 42, 157, 194, 274, 311, 391, 428
CviQI GTAC 1 cut(s) 511
DpnI GATC 3 cut(s) 166, 185, 541
DpnII GATC 3 cut(s) 164, 183, 539
Eam1104I CTCTTC 2 cut(s) 260, 377
EarI CTCTTC 2 cut(s) 260, 377
FaiI YATR 2 cut(s) 504, 544
FblI GTMKAC 2 cut(s) 280, 397
FspBI CTAG 2 cut(s) 275, 392
HaeIII GGCC 1 cut(s) 157
HincII GTYRAC 2 cut(s) 281, 398
HindII GTYRAC 2 cut(s) 281, 398
HphI GGTGA 2 cut(s) 86, 116
Hpy166II GTNNAC 3 cut(s) 55, 281, 398
Hpy188I TCNGA 1 cut(s) 535
Hpy188III TCNNGA 2 cut(s) 63, 92
Hpy8I GTNNAC 3 cut(s) 55, 281, 398
HpyAV CCTTC 2 cut(s) 301, 418
HpyCH4V TGCA 3 cut(s) 317, 434, 527
HpyF10VI GCNNNNNNNGC 3 cut(s) 154, 346, 463
Kzo9I GATC 3 cut(s) 164, 183, 539
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 3 cut(s) 48, 77, 241
LweI GCATC 1 cut(s) 68
MaeI CTAG 2 cut(s) 275, 392
MaeIII GTNAC 3 cut(s) 30, 256, 373
MalI GATC 3 cut(s) 166, 185, 541
MboI GATC 3 cut(s) 164, 183, 539
MboII GAAGA 7 cut(s) 119, 190, 193, 277, 365, 394, 482
MhlI GDGCHC 1 cut(s) 130
MluCI AATT 2 cut(s) 204, 222
MnlI CCTC 6 cut(s) 65, 88, 113, 147, 261, 378
MwoI GCNNNNNNNGC 3 cut(s) 154, 346, 463
NdeII GATC 3 cut(s) 164, 183, 539
NlaIV GGNNCC 2 cut(s) 292, 409
NmuCI GTSAC 1 cut(s) 30
PspN4I GGNNCC 2 cut(s) 292, 409
RsaI GTAC 1 cut(s) 512
RsaNI GTAC 1 cut(s) 511
SalI GTCGAC 2 cut(s) 279, 396
Sau3AI GATC 3 cut(s) 164, 183, 539
ScaI AGTACT 1 cut(s) 512
SduI GDGCHC 1 cut(s) 130
SfaNI GCATC 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
Sse9I AATT 2 cut(s) 204, 222
SspMI CTAG 2 cut(s) 275, 392
TaqI TCGA 3 cut(s) 137, 280, 397
TasI AATT 2 cut(s) 204, 222
TatI WGTACW 1 cut(s) 510
TscAI CASTG 1 cut(s) 235
TseFI GTSAC 1 cut(s) 30
Tsp45I GTSAC 1 cut(s) 30
TspDTI ATGAA 2 cut(s) 339, 456
TspRI CASTG 1 cut(s) 235
XmiI GTMKAC 2 cut(s) 280, 397
XspI CTAG 2 cut(s) 275, 392
ZrmI AGTACT 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.