Rroxscaffold_6G00388540

JmjC domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
1528123 .. 1532636
4514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00388540.1

Sequence Viewer

Length: 228 bp
ATGGGTGGTATAGTCTTATCATATTCAGCCATATTGTCTCAGAGCCATAACAGGTTCAGTCTCGCCTTCTCTAGGATCTCTCACAATCCAAACCCCAATTTCCCGATCGGGTTCAGTGAGGGTGAAATAGAGATGGCAAATGGGAAAGCGATGAGTTCCAGTGAGTTTGTGGAGAGGTACTTGGAGAATAACCAGCTTGTGGTGCTCACAGGTCTCAAGGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

75

Amino Acids

8.26

Weight (kDa)

5.17

Isoelectric Point (pI)

46.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 199
AclWI GGATC 1 cut(s) 83
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 2 cut(s) 72, 199
AluBI AGCT 1 cut(s) 196
AluI AGCT 1 cut(s) 196
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 3 cut(s) 42, 65, 218
AlwI GGATC 1 cut(s) 83
AsuHPI GGTGA 1 cut(s) 134
Bbv12I GWGCWC 1 cut(s) 207
BccI CCATC 1 cut(s) 127
BcoDI GTCTC 3 cut(s) 42, 65, 218
BfaI CTAG 1 cut(s) 72
BpuEI CTTGAG 1 cut(s) 200
BsaI GGTCTC 1 cut(s) 218
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 199
Bse1I ACTGG 1 cut(s) 159
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 2 cut(s) 72, 199
BseMII CTCAG 1 cut(s) 53
BseNI ACTGG 1 cut(s) 159
Bsh1285I CGRYCG 1 cut(s) 108
BsiEI CGRYCG 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 207
BslI CCNNNNNNNGG 2 cut(s) 72, 199
BsmAI GTCTC 3 cut(s) 42, 65, 218
Bso31I GGTCTC 1 cut(s) 218
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 2 cut(s) 75, 105
BspCNI CTCAG 1 cut(s) 52
BspPI GGATC 1 cut(s) 83
BspTNI GGTCTC 1 cut(s) 218
BsrI ACTGG 1 cut(s) 159
BssMI GATC 2 cut(s) 75, 105
BstDEI CTNAG 1 cut(s) 39
BstENI CCTNNNNNAGG 1 cut(s) 70
BstF5I GGATG 1 cut(s) 226
BstKTI GATC 2 cut(s) 78, 108
BstMAI GTCTC 3 cut(s) 42, 65, 218
BstMBI GATC 2 cut(s) 75, 105
BstMCI CGRYCG 1 cut(s) 108
BstMWI GCNNNNNNNGC 1 cut(s) 202
BstX2I RGATCY 1 cut(s) 75
BstYI RGATCY 1 cut(s) 75
BtgZI GCGATG 1 cut(s) 164
BtsCI GGATG 1 cut(s) 226
BtsIMutI CAGTG 2 cut(s) 121, 166
Csp6I GTAC 1 cut(s) 178
CviJI RGCY 3 cut(s) 29, 45, 196
CviKI_1 RGCY 3 cut(s) 29, 45, 196
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 1 cut(s) 39
DpnI GATC 2 cut(s) 77, 107
DpnII GATC 2 cut(s) 75, 105
Eco31I GGTCTC 1 cut(s) 218
EcoNI CCTNNNNNAGG 1 cut(s) 70
FaiI YATR 4 cut(s) 11, 22, 32, 48
FspBI CTAG 1 cut(s) 72
HphI GGTGA 1 cut(s) 134
Hpy188I TCNGA 1 cut(s) 42
Hpy188III TCNNGA 1 cut(s) 103
HpyAV CCTTC 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 1 cut(s) 202
HpyF3I CTNAG 1 cut(s) 39
Kzo9I GATC 2 cut(s) 75, 105
LpnPI CCDG 4 cut(s) 37, 172, 195, 206
MaeI CTAG 1 cut(s) 72
MalI GATC 2 cut(s) 77, 107
MboI GATC 2 cut(s) 75, 105
MflI RGATCY 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 1 cut(s) 97
MnlI CCTC 2 cut(s) 112, 168
MwoI GCNNNNNNNGC 1 cut(s) 202
NdeII GATC 2 cut(s) 75, 105
PflMI CCANNNNNTGG 1 cut(s) 199
Ple19I CGATCG 1 cut(s) 108
PsuI RGATCY 1 cut(s) 75
PvuI CGATCG 1 cut(s) 108
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
Sau3AI GATC 2 cut(s) 75, 105
SduI GDGCHC 1 cut(s) 207
SetI ASST 4 cut(s) 56, 179, 198, 214
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 1 cut(s) 97
SspMI CTAG 1 cut(s) 72
TasI AATT 1 cut(s) 97
TscAI CASTG 2 cut(s) 121, 166
TspRI CASTG 2 cut(s) 121, 166
Van91I CCANNNNNTGG 1 cut(s) 199
XagI CCTNNNNNAGG 1 cut(s) 70
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XspI CTAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.