Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8424905.1

Orthogroup ID

OG0001331

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1283

Gene Structure 1282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8424905.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1067 bp

atggacaaattcaacagtgacaaatgcaatacatccattgtcaatttccacagaagctgccccaatcctgattgttcttatgatctctgtgtcacttgttgttgggaactaaggaaaagatgtcatcttggaggcagtgaagcagaatcttctggtcaacagttttgtgaaggagtacacagtaaaggtacagtatcagatggccaggttcctgaaaatgtgaatggaaatatattacagagcgtaccagtaaatgagttcacaaatgatatatcttctgagtttcctagttggaaagcagaggctgatggtaggattccttgtccaccaaaagcactgggaggttgtggtacccagttacttgaactcagacgtatatttgaagcagactgggttgaaaaactaattttcagctcagaggacctcactgttcattatcaaccatcagatgttgatttttctcaaggatgctctgcatgtcattctatcagttctgcatgcaatggtgtaaaagcttccgaagtgaggcatgcagctgatagactgaactgtcatgataacttcctttactgcccggattctgtacatttgggaaacgatgacattgagcattttcaattgcactggaggagaggggaaccagttgtagttagaaatgtacttgaaaaggctactggccttagctgggaaccaatggtaatgtggagggcttttattggggcaaaaaaagtactgaaagaggaggcagcgaaggtcaaagccattgattgccttgattggtgcgaggttgagattaatatttttcagttctttaagggctatatagagggtcgtaaatacactaatgggtggcctgagatgttgaagctgaaggattggcctccatcaaatctctttgaagagtgtttgcctaggcacggtgctgaatttatggccatgctgccctttagtgactatacccatcccaaatcaggtgttctaaatcttgcaacaaggcttcctatttctttgaagccagacttgggtcctaagacatacatcgcttatggtactatggaggagcttgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

JmjC WRC zf-4CXXC_R1

Protein Analysis

356

Amino Acids

39.99

Weight (kDa)

5.42

Isoelectric Point (pI)

44.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00990 AT4G00990
fragaria_vesca	FvH4_7g31570 FvH4_7g31570 FvH4_7g31570 FvH4_7g31570 FvH4_7g31570 FvH4_7g31570
malus_domestica	MD01G1218500.v1.1
prunus_persica	Prupe.2G309900_v2.0.a1 Prupe.2G309900_v2.0.a1 Prupe.4G196700_v2.0.a1
pyrus_communis	pycom01g22840
rosa_chinensis	RchiOBHm_Chr1g0380571 RchiOBHm_Chr2g0102041
rosa_laevigata	RLG00000001517 RLG00000003267 RLG00000004936 RLG00000008941 RLG00000021775 RLG00000023713 RLG00000026284 RLG00000035166
rosa_multiflora	Rmu_co8145792.1_g000001 Rmu_co8424905.1_g000001 Rmu_co8458399.1_g000001 Rmu_sc0002486.1_g000005 Rmu_sc0003730.1_g000009 Rmu_sc0011739.1_g000001 Rmu_ssc0000015.1_g000010
rosa_roxburghii	Rroxscaffold_2G00097880 Rroxscaffold_4G00279180 Rroxscaffold_4G00279190 Rroxscaffold_6G00388540
rosa_rugosa	Rorug01G0422600
rosa_samantha	Rh1AG447100 Rh1BG202200 Rh1BG402400 Rh1CG416600 Rh1CG416700 Rh1CG416800 Rh1CG416900 Rh1DG432600 Rh2CG116900 Rh2CG157700 Rh2CG157800 Rh2CG241900 Rh4BG088800 Rh4BG088900 Rh5BG519200 Rh5CG542800 Rh5DG400800
rosa_wichuraiana	Rw1G038890 Rw5G046210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	549
Acc65I	GGTACC	1 cut(s)	350
AccB1I	GGYRCC	1 cut(s)	350
AcoI	YGGCCR	2 cut(s)	202, 933
AcsI	RAATTY	2 cut(s)	8, 926
AcuI	CTGAAG	1 cut(s)	890
AfaI	GTAC	8 cut(s)	177, 190, 246, 352, 585, 660, 732, 1051
AfiI	CCNNNNNNNGG	5 cut(s)	525, 685, 917, 971, 1022
AgsI	TTSAA	9 cut(s)	13, 365, 383, 398, 617, 665, 865, 899, 1012
AjnI	CCWGG	1 cut(s)	204
AjuI	GAANNNNNNNTTGG	2 cut(s)	1004, 1036
AluBI	AGCT	7 cut(s)	57, 414, 515, 536, 684, 868, 1063
AluI	AGCT	7 cut(s)	57, 414, 515, 536, 684, 868, 1063
AlwNI	CAGNNNCTG	2 cut(s)	57, 305
AoxI	GGCC	5 cut(s)	202, 676, 851, 878, 933
ApeKI	GCWGC	4 cut(s)	57, 533, 746, 940
ApoI	RAATTY	2 cut(s)	8, 926
AseI	ATTAAT	1 cut(s)	795
Asp718I	GGTACC	1 cut(s)	350
AspA2I	CCTAGG	1 cut(s)	911
AspS9I	GGNCC	2 cut(s)	421, 1025
AsuC2I	CCSGG	1 cut(s)	575
AvaII	GGWCC	2 cut(s)	421, 1025
AvrII	CCTAGG	1 cut(s)	911
BalI	TGGCCA	2 cut(s)	204, 935
BanI	GGYRCC	1 cut(s)	350
BbvI	GCAGC	4 cut(s)	44, 545, 758, 927
BccI	CCATC	5 cut(s)	194, 302, 451, 892, 969
BciT130I	CCWGG	1 cut(s)	206
BcnI	CCSGG	1 cut(s)	575
BfaI	CTAG	2 cut(s)	288, 912
BisI	GCNGC	4 cut(s)	58, 534, 747, 941
BlnI	CCTAGG	1 cut(s)	911
BlsI	GCNGC	4 cut(s)	59, 535, 748, 942
BmcAI	AGTACT	1 cut(s)	732
Bme1390I	CCNGG	2 cut(s)	206, 575
Bme18I	GGWCC	2 cut(s)	421, 1025
BmgT120I	GGNCC	2 cut(s)	421, 1025
BmiI	GGNNCC	5 cut(s)	210, 352, 639, 690, 1026
BmrFI	CCNGG	2 cut(s)	206, 575
BmrI	ACTGGG	3 cut(s)	347, 349, 400
BmsI	GCATC	1 cut(s)	458
BmuI	ACTGGG	3 cut(s)	347, 349, 400
BoxI	GACNNNNGTC	1 cut(s)	1023
BpmI	CTGGAG	1 cut(s)	646
Bpu10I	CCTNAGC	1 cut(s)	680
BpuEI	CTTGAG	1 cut(s)	447
BpuMI	CCSGG	1 cut(s)	575
BsaJI	CCNNGG	1 cut(s)	911
Bsc4I	CCNNNNNNNGG	5 cut(s)	525, 685, 917, 971, 1022
Bse1I	ACTGG	7 cut(s)	248, 342, 355, 395, 629, 641, 679
Bse3DI	GCAATG	1 cut(s)	508
BseBI	CCWGG	1 cut(s)	206
BseDI	CCNNGG	1 cut(s)	911
BseGI	GGATG	3 cut(s)	32, 473, 961
BseLI	CCNNNNNNNGG	5 cut(s)	525, 685, 917, 971, 1022
BseMI	GCAATG	1 cut(s)	508
BseMII	CTCAG	4 cut(s)	270, 382, 429, 846
BseNI	ACTGG	7 cut(s)	248, 342, 355, 395, 629, 641, 679
BseRI	GAGGAG	2 cut(s)	643, 755
BseXI	GCAGC	4 cut(s)	44, 545, 758, 927
BseYI	CCCAGC	1 cut(s)	684
BshFI	GGCC	5 cut(s)	204, 678, 853, 880, 935
BshNI	GGYRCC	1 cut(s)	350
BsiSI	CCGG	1 cut(s)	575
BslI	CCNNNNNNNGG	5 cut(s)	525, 685, 917, 971, 1022
BsnI	GGCC	5 cut(s)	204, 678, 853, 880, 935
Bsp1407I	TGTACA	1 cut(s)	583
Bsp143I	GATC	1 cut(s)	82
BspANI	GGCC	5 cut(s)	204, 678, 853, 880, 935
BspCNI	CTCAG	4 cut(s)	271, 381, 428, 847
BspHI	TCATGA	1 cut(s)	553
BspLI	GGNNCC	5 cut(s)	210, 352, 639, 690, 1026
BspT107I	GGYRCC	1 cut(s)	350
BsrDI	GCAATG	1 cut(s)	508
BsrGI	TGTACA	1 cut(s)	583
BsrI	ACTGG	7 cut(s)	248, 342, 355, 395, 629, 641, 679
BssECI	CCNNGG	1 cut(s)	911
BssMI	GATC	1 cut(s)	82
BssT1I	CCWWGG	1 cut(s)	911
Bst2UI	CCWGG	1 cut(s)	206
Bst4CI	ACNGT	7 cut(s)	17, 162, 182, 193, 430, 551, 920
Bst6I	CTCTTC	1 cut(s)	894
BstAUI	TGTACA	1 cut(s)	583
BstC8I	GCNNGC	2 cut(s)	499, 531
BstDEI	CTNAG	7 cut(s)	110, 279, 368, 415, 680, 855, 1029
BstF5I	GGATG	3 cut(s)	32, 473, 961
BstKTI	GATC	1 cut(s)	85
BstMBI	GATC	1 cut(s)	82
BstNI	CCWGG	1 cut(s)	206
BstNSI	RCATGY	3 cut(s)	480, 501, 533
BstPAI	GACNNNNGTC	1 cut(s)	1023
BstSCI	CCNGG	2 cut(s)	204, 573
BstV1I	GCAGC	4 cut(s)	44, 545, 758, 927
BsuRI	GGCC	5 cut(s)	204, 678, 853, 880, 935
BtgZI	GCGATG	1 cut(s)	1024
BtsCI	GGATG	3 cut(s)	32, 473, 961
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	5 cut(s)	22, 142, 335, 426, 622
Cac8I	GCNNGC	2 cut(s)	499, 531
CaiI	CAGNNNCTG	2 cut(s)	57, 305
CciI	TCATGA	1 cut(s)	553
Cfr13I	GGNCC	2 cut(s)	421, 1025
Csp6I	GTAC	8 cut(s)	176, 189, 245, 351, 584, 659, 731, 1050
CviAII	CATG	5 cut(s)	477, 498, 530, 554, 937
CviQI	GTAC	8 cut(s)	176, 189, 245, 351, 584, 659, 731, 1050
DdeI	CTNAG	7 cut(s)	110, 279, 368, 415, 680, 855, 1029
DpnI	GATC	1 cut(s)	84
DpnII	GATC	1 cut(s)	82
DrdI	GACNNNNNNGTC	1 cut(s)	549
DseDI	GACNNNNNNGTC	1 cut(s)	549
EaeI	YGGCCR	2 cut(s)	202, 933
Eam1104I	CTCTTC	1 cut(s)	894
EarI	CTCTTC	1 cut(s)	894
Eco130I	CCWWGG	1 cut(s)	911
Eco47I	GGWCC	2 cut(s)	421, 1025
Eco57I	CTGAAG	1 cut(s)	890
EcoO109I	RGGNCCY	2 cut(s)	421, 1025
EcoRII	CCWGG	1 cut(s)	204
EcoT14I	CCWWGG	1 cut(s)	911
ErhI	CCWWGG	1 cut(s)	911
FaeI	CATG	5 cut(s)	480, 501, 533, 557, 940
FalI	AAGNNNNNCTT	2 cut(s)	1004, 1036
FatI	CATG	5 cut(s)	476, 497, 529, 553, 936
Fnu4HI	GCNGC	4 cut(s)	58, 534, 747, 941
FokI	GGATG	3 cut(s)	19, 480, 948
Fsp4HI	GCNGC	4 cut(s)	58, 534, 747, 941
FspBI	CTAG	2 cut(s)	288, 912
GluI	GCNGC	4 cut(s)	58, 534, 747, 941
GsaI	CCCAGC	1 cut(s)	688
GsuI	CTGGAG	1 cut(s)	646
HaeIII	GGCC	5 cut(s)	204, 678, 853, 880, 935
HapII	CCGG	1 cut(s)	575
Hin1II	CATG	5 cut(s)	480, 501, 533, 557, 940
HincII	GTYRAC	1 cut(s)	158
HindII	GTYRAC	1 cut(s)	158
HindIII	AAGCTT	1 cut(s)	513
HinfI	GANTC	3 cut(s)	146, 316, 578
HpaII	CCGG	1 cut(s)	575
Hpy166II	GTNNAC	4 cut(s)	158, 178, 261, 326
Hpy188I	TCNGA	6 cut(s)	199, 280, 371, 418, 448, 520
Hpy188III	TCNNGA	3 cut(s)	68, 212, 554
Hpy8I	GTNNAC	4 cut(s)	158, 178, 261, 326
HpyAV	CCTTC	3 cut(s)	164, 745, 865
HpyCH4III	ACNGT	7 cut(s)	17, 162, 182, 193, 430, 551, 920
HpyCH4IV	ACGT	1 cut(s)	373
HpyCH4V	TGCA	7 cut(s)	27, 476, 497, 501, 533, 622, 989
HpyF3I	CTNAG	7 cut(s)	110, 279, 368, 415, 680, 855, 1029
HpySE526I	ACGT	1 cut(s)	373
Hsp92II	CATG	5 cut(s)	480, 501, 533, 557, 940
KpnI	GGTACC	1 cut(s)	354
Kzo9I	GATC	1 cut(s)	82
LmnI	GCTCC	1 cut(s)	1060
Lsp1109I	GCAGC	4 cut(s)	44, 545, 758, 927
LweI	GCATC	1 cut(s)	458
MaeI	CTAG	2 cut(s)	288, 912
MaeII	ACGT	1 cut(s)	373
MaeIII	GTNAC	4 cut(s)	17, 91, 357, 950
MalI	GATC	1 cut(s)	84
MboI	GATC	1 cut(s)	82
MboII	GAAGA	3 cut(s)	141, 267, 911
MfeI	CAATTG	1 cut(s)	617
MlsI	TGGCCA	2 cut(s)	204, 935
MluCI	AATT	5 cut(s)	8, 43, 405, 617, 926
MluNI	TGGCCA	2 cut(s)	204, 935
MmeI	TCCRAC	1 cut(s)	272
Mox20I	TGGCCA	2 cut(s)	204, 935
MscI	TGGCCA	2 cut(s)	204, 935
MseI	TTAA	2 cut(s)	795, 813
Msp20I	TGGCCA	2 cut(s)	204, 935
MspA1I	CMGCKG	1 cut(s)	536
MspI	CCGG	1 cut(s)	575
MspR9I	CCNGG	2 cut(s)	206, 575
MunI	CAATTG	1 cut(s)	617
MvaI	CCWGG	1 cut(s)	206
NciI	CCSGG	1 cut(s)	575
NdeII	GATC	1 cut(s)	82
NlaIII	CATG	5 cut(s)	480, 501, 533, 557, 940
NlaIV	GGNNCC	5 cut(s)	210, 352, 639, 690, 1026
NmuCI	GTSAC	3 cut(s)	17, 91, 950
NspI	RCATGY	3 cut(s)	480, 501, 533
PaeI	GCATGC	2 cut(s)	501, 533
PagI	TCATGA	1 cut(s)	553
PfeI	GAWTC	3 cut(s)	146, 316, 578
PkrI	GCNGC	4 cut(s)	59, 535, 748, 942
PpuMI	RGGWCCY	2 cut(s)	421, 1025
PshAI	GACNNNNGTC	1 cut(s)	1023
PshBI	ATTAAT	1 cut(s)	795
Psp5II	RGGWCCY	2 cut(s)	421, 1025
Psp6I	CCWGG	1 cut(s)	204
PspFI	CCCAGC	1 cut(s)	684
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	5 cut(s)	210, 352, 639, 690, 1026
PspPI	GGNCC	2 cut(s)	421, 1025
PspPPI	RGGWCCY	2 cut(s)	421, 1025
PstNI	CAGNNNCTG	2 cut(s)	57, 305
PvuII	CAGCTG	1 cut(s)	536
RsaI	GTAC	8 cut(s)	177, 190, 246, 352, 585, 660, 732, 1051
RsaNI	GTAC	8 cut(s)	176, 189, 245, 351, 584, 659, 731, 1050
SaqAI	TTAA	2 cut(s)	795, 813
SatI	GCNGC	4 cut(s)	58, 534, 747, 941
Sau3AI	GATC	1 cut(s)	82
Sau96I	GGNCC	2 cut(s)	421, 1025
ScaI	AGTACT	1 cut(s)	732
ScrFI	CCNGG	2 cut(s)	206, 575
SfaNI	GCATC	1 cut(s)	458
SinI	GGWCC	2 cut(s)	421, 1025
SmlI	CTYRAG	1 cut(s)	462
SmoI	CTYRAG	1 cut(s)	462
SphI	GCATGC	2 cut(s)	501, 533
Sse9I	AATT	5 cut(s)	8, 43, 405, 617, 926
SspI	AATATT	1 cut(s)	799
SspMI	CTAG	2 cut(s)	288, 912
StyD4I	CCNGG	2 cut(s)	204, 573
StyI	CCWWGG	1 cut(s)	911
TaaI	ACNGT	7 cut(s)	17, 162, 182, 193, 430, 551, 920
TaiI	ACGT	1 cut(s)	376
TasI	AATT	5 cut(s)	8, 43, 405, 617, 926
TatI	WGTACW	4 cut(s)	175, 583, 658, 730
TfiI	GAWTC	3 cut(s)	146, 316, 578
Tru1I	TTAA	2 cut(s)	795, 813
Tru9I	TTAA	2 cut(s)	795, 813
TscAI	CASTG	5 cut(s)	22, 142, 342, 433, 629
TseFI	GTSAC	3 cut(s)	17, 91, 950
TseI	GCWGC	4 cut(s)	57, 533, 746, 940
Tsp45I	GTSAC	3 cut(s)	17, 91, 950
TspDTI	ATGAA	1 cut(s)	422
TspRI	CASTG	5 cut(s)	22, 142, 342, 433, 629
VpaK11BI	GGWCC	2 cut(s)	421, 1025
VspI	ATTAAT	1 cut(s)	795
XapI	RAATTY	2 cut(s)	8, 926
XceI	RCATGY	3 cut(s)	480, 501, 533
XcmI	CCANNNNNNNNNTGG	1 cut(s)	699
XmaJI	CCTAGG	1 cut(s)	911
XspI	CTAG	2 cut(s)	288, 912
ZrmI	AGTACT	1 cut(s)	732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.