pycom08g20070

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0001187
Physical Location & Seq
Reverse (-)
19955198 .. 19957446
2249 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 996 bp
ATGAGCTCCTCCAAATTGTTACTAATTTTCTTTCTACAGCTACTTGTTGGTTTTGCTACCACCTTGGCGATGGTGCAAGGCCAAGGCCACCTTACGCGCGTTGGATTCTATTCGCGTACATGTCCCACGGCAGAGTCTATTGTCAAACAAACAGTTCAAACTCATTTCAACTCCAACCCTTCCGTTGCTCCTGGCTTGTTAAGGATGCATTTCCATGACTGCTTTGTCCAAGGTTGTGATGCTTCTGTCCTTCTTGACGGCCCTAATACTGAGAAAACCGCTGGGCCTAACCTCGGTTTAAGAGGTTGGGAAGTCATTGACGATGCAAAGACCAAGCTCGAAGCTGCATGTCCCGAGGTTGTTTCCTGTGCAGATATTCTCGCTCTTGCTGCCCGTGATTCCGTGGTTCTGACCAAAGGATTCACTTGGAATGTGCCTACTGGAAGAAGAGATGGACGAGTTTCTCTGGCAACCGAGACTACTAATTTGCCTGGCTTTAGAGATTCCATTGATGTACAAAAGGCCAAGTTCCAAGATTTGGGTCTCAACACTCAAGATCTTGTCACGCTAGTTGGCGCACACACCATTGGCACCTCAGCTTGCCAGTTCTTCAGGTACAGACTGTATAACTTCACCACCACCGGAAATGGCGCTGACGAGACAATCAACCCTTTATTCCTTGCCCAACTACGATCAATTTGCCCTGAAAATGGTGACGCGGCCAGGCGTGTTGATTTAGACACGGGCAGCGCAAGTCGATTTGATGCAACTTTCTTCACAAACTTGAAGAATGGTCGTGGGATACTTGAGTCGGATCAGAAGTTGTGGACCGACGCCACCACTAAAAGTTTTGTCCAACGGTTTTTGGGGGTGAGAGGCTTACAAGCATTGAATTTCAACCTCGAGTTCGGAAAGTCGATGGTAAAAATGAGTAACATCGGTGTAAAATCTGCCACAAATGGTGAAATCCGCCACATTTGTTCTGCGGTCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

332

Amino Acids

36.03

Weight (kDa)

8.41

Isoelectric Point (pI)

33.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 48 - 288 5.4e-85 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 224
AccB1I GGYRCC 1 cut(s) 590
AccB7I CCANNNNNTGG 1 cut(s) 538
AccII CGCG 4 cut(s) 97, 99, 115, 719
AciI CCGC 4 cut(s) 279, 719, 970, 986
AclWI GGATC 1 cut(s) 822
AcoI YGGCCR 1 cut(s) 720
AcsI RAATTY 1 cut(s) 892
AcuI CTGAAG 1 cut(s) 595
AcyI GRCGYC 1 cut(s) 834
AfaI GTAC 3 cut(s) 118, 516, 617
AfiI CCNNNNNNNGG 3 cut(s) 293, 538, 710
AflIII ACRYGT 1 cut(s) 119
AgsI TTSAA 5 cut(s) 158, 169, 787, 892, 898
AjnI CCWGG 3 cut(s) 190, 490, 722
AluBI AGCT 5 cut(s) 6, 40, 337, 344, 599
AluI AGCT 5 cut(s) 6, 40, 337, 344, 599
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 3 cut(s) 470, 548, 653
AlwI GGATC 1 cut(s) 822
Ama87I CYCGRG 2 cut(s) 353, 902
AoxI GGCC 6 cut(s) 79, 85, 259, 284, 522, 720
ApeKI GCWGC 3 cut(s) 344, 389, 747
ApoI RAATTY 1 cut(s) 892
ArsI GACNNNNNNTTYG 2 cut(s) 469, 501
AspLEI GCGC 4 cut(s) 99, 578, 653, 752
AspS9I GGNCC 3 cut(s) 260, 284, 828
AsuHPI GGTGA 4 cut(s) 625, 725, 883, 974
AvaI CYCGRG 2 cut(s) 353, 902
AvaII GGWCC 1 cut(s) 828
BaeI ACNNNNGTAYC 2 cut(s) 794, 827
BanI GGYRCC 1 cut(s) 590
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 8
BbvCI CCTCAGC 1 cut(s) 595
BbvI GCAGC 3 cut(s) 331, 376, 759
BccI CCATC 3 cut(s) 64, 446, 913
BceAI ACGGC 2 cut(s) 144, 274
BcgI CGANNNNNNTGC 2 cut(s) 681, 715
BciT130I CCWGG 3 cut(s) 192, 492, 724
BciVI GTATCC 1 cut(s) 795
BcoDI GTCTC 3 cut(s) 470, 548, 653
BfaI CTAG 1 cut(s) 569
BfmI CTRYAG 1 cut(s) 35
BfoI RGCGCY 1 cut(s) 654
BfuI GTATCC 1 cut(s) 795
BglII AGATCT 1 cut(s) 556
BisI GCNGC 4 cut(s) 345, 390, 720, 748
BlsI GCNGC 4 cut(s) 346, 391, 721, 749
Bme1390I CCNGG 3 cut(s) 192, 492, 724
Bme18I GGWCC 1 cut(s) 828
BmeT110I CYCGRG 2 cut(s) 353, 902
BmgT120I GGNCC 3 cut(s) 260, 284, 828
BmiI GGNNCC 1 cut(s) 592
BmrFI CCNGG 3 cut(s) 192, 492, 724
BmsI GCATC 4 cut(s) 195, 229, 313, 754
Bpu10I CCTNAGC 1 cut(s) 595
BpuEI CTTGAG 2 cut(s) 537, 827
BsaHI GRCGYC 1 cut(s) 834
BsaI GGTCTC 1 cut(s) 548
BsaJI CCNNGG 7 cut(s) 63, 82, 126, 229, 292, 354, 402
BsaWI WCCGGW 1 cut(s) 641
Bsc4I CCNNNNNNNGG 3 cut(s) 293, 538, 710
Bse1I ACTGG 2 cut(s) 445, 604
BseBI CCWGG 3 cut(s) 192, 492, 724
BseDI CCNNGG 7 cut(s) 63, 82, 126, 229, 292, 354, 402
BseGI GGATG 1 cut(s) 210
BseLI CCNNNNNNNGG 3 cut(s) 293, 538, 710
BseMII CTCAG 2 cut(s) 261, 609
BseNI ACTGG 2 cut(s) 445, 604
BseXI GCAGC 3 cut(s) 331, 376, 759
BseYI CCCAGC 1 cut(s) 281
BsgI GTGCAG 1 cut(s) 390
Bsh1236I CGCG 4 cut(s) 97, 99, 115, 719
BshFI GGCC 6 cut(s) 81, 87, 261, 286, 524, 722
BshNI GGYRCC 1 cut(s) 590
BsiHKAI GWGCWC 1 cut(s) 8
BsiHKCI CYCGRG 2 cut(s) 353, 902
BsiSI CCGG 1 cut(s) 642
BslFI GGGAC 2 cut(s) 108, 336
BslI CCNNNNNNNGG 3 cut(s) 293, 538, 710
BsmAI GTCTC 3 cut(s) 470, 548, 653
BsmFI GGGAC 2 cut(s) 108, 336
BsnI GGCC 6 cut(s) 81, 87, 261, 286, 524, 722
Bso31I GGTCTC 1 cut(s) 548
BsoBI CYCGRG 2 cut(s) 353, 902
Bsp1286I GDGCHC 1 cut(s) 8
Bsp1407I TGTACA 1 cut(s) 514
Bsp143I GATC 3 cut(s) 556, 692, 814
BspACI CCGC 4 cut(s) 279, 719, 970, 986
BspANI GGCC 6 cut(s) 81, 87, 261, 286, 524, 722
BspCNI CTCAG 2 cut(s) 262, 608
BspFNI CGCG 4 cut(s) 97, 99, 115, 719
BspLI GGNNCC 1 cut(s) 592
BspPI GGATC 1 cut(s) 822
BspT107I GGYRCC 1 cut(s) 590
BspTNI GGTCTC 1 cut(s) 548
BsrGI TGTACA 1 cut(s) 514
BsrI ACTGG 2 cut(s) 445, 604
BssECI CCNNGG 7 cut(s) 63, 82, 126, 229, 292, 354, 402
BssMI GATC 3 cut(s) 556, 692, 814
BssNI GRCGYC 1 cut(s) 834
BssT1I CCWWGG 3 cut(s) 63, 82, 229
Bst2UI CCWGG 3 cut(s) 192, 492, 724
Bst4CI ACNGT 3 cut(s) 154, 624, 861
Bst6I CTCTTC 1 cut(s) 442
BstACI GRCGYC 1 cut(s) 834
BstAUI TGTACA 1 cut(s) 514
BstC8I GCNNGC 1 cut(s) 601
BstDEI CTNAG 2 cut(s) 270, 595
BstDSI CCRYGG 2 cut(s) 126, 402
BstF5I GGATG 1 cut(s) 210
BstFNI CGCG 4 cut(s) 97, 99, 115, 719
BstH2I RGCGCY 1 cut(s) 654
BstHHI GCGC 4 cut(s) 99, 578, 653, 752
BstKTI GATC 3 cut(s) 559, 695, 817
BstMAI GTCTC 3 cut(s) 470, 548, 653
BstMBI GATC 3 cut(s) 556, 692, 814
BstMWI GCNNNNNNNGC 1 cut(s) 389
BstNI CCWGG 3 cut(s) 192, 492, 724
BstNSI RCATGY 2 cut(s) 123, 351
BstSCI CCNGG 3 cut(s) 190, 490, 722
BstSFI CTRYAG 1 cut(s) 35
BstUI CGCG 4 cut(s) 97, 99, 115, 719
BstV1I GCAGC 3 cut(s) 331, 376, 759
BstX2I RGATCY 1 cut(s) 556
BstYI RGATCY 1 cut(s) 556
BsuI GTATCC 1 cut(s) 795
BsuRI GGCC 6 cut(s) 81, 87, 261, 286, 524, 722
BtgI CCRYGG 2 cut(s) 126, 402
BtgZI GCGATG 1 cut(s) 83
BtsCI GGATG 1 cut(s) 210
Cac8I GCNNGC 1 cut(s) 601
CfoI GCGC 4 cut(s) 99, 578, 653, 752
Cfr13I GGNCC 3 cut(s) 260, 284, 828
CseI GACGC 2 cut(s) 725, 842
Csp6I GTAC 3 cut(s) 117, 515, 616
CviAII CATG 3 cut(s) 120, 215, 348
CviQI GTAC 3 cut(s) 117, 515, 616
DdeI CTNAG 2 cut(s) 270, 595
DpnI GATC 3 cut(s) 558, 694, 816
DpnII GATC 3 cut(s) 556, 692, 814
DrdI GACNNNNNNGTC 1 cut(s) 224
DseDI GACNNNNNNGTC 1 cut(s) 224
EaeI YGGCCR 1 cut(s) 720
Eam1104I CTCTTC 1 cut(s) 442
EarI CTCTTC 1 cut(s) 442
EciI GGCGGA 1 cut(s) 959
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 3 cut(s) 63, 82, 229
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 548
Eco47I GGWCC 1 cut(s) 828
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 595
Eco88I CYCGRG 2 cut(s) 353, 902
EcoICRI GAGCTC 1 cut(s) 6
EcoRII CCWGG 3 cut(s) 190, 490, 722
EcoT14I CCWWGG 3 cut(s) 63, 82, 229
EcoT22I ATGCAT 1 cut(s) 210
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 3 cut(s) 63, 82, 229
FaeI CATG 3 cut(s) 123, 218, 351
FaiI YATR 4 cut(s) 121, 216, 349, 627
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FaqI GGGAC 2 cut(s) 108, 336
FatI CATG 3 cut(s) 119, 214, 347
Fnu4HI GCNGC 4 cut(s) 345, 390, 720, 748
FokI GGATG 1 cut(s) 217
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 4 cut(s) 345, 390, 720, 748
FspBI CTAG 1 cut(s) 569
GlaI GCGC 4 cut(s) 98, 577, 652, 751
GluI GCNGC 4 cut(s) 345, 390, 720, 748
GsaI CCCAGC 1 cut(s) 285
HaeII RGCGCY 1 cut(s) 654
HaeIII GGCC 6 cut(s) 81, 87, 261, 286, 524, 722
HapII CCGG 1 cut(s) 642
HgaI GACGC 2 cut(s) 725, 842
HhaI GCGC 4 cut(s) 99, 578, 653, 752
Hin1I GRCGYC 1 cut(s) 834
Hin1II CATG 3 cut(s) 123, 218, 351
Hin6I GCGC 4 cut(s) 97, 576, 651, 750
HinP1I GCGC 4 cut(s) 97, 576, 651, 750
HincII GTYRAC 1 cut(s) 991
HindII GTYRAC 1 cut(s) 991
HinfI GANTC 6 cut(s) 105, 134, 398, 420, 503, 809
HpaII CCGG 1 cut(s) 642
HphI GGTGA 4 cut(s) 625, 725, 883, 974
Hpy166II GTNNAC 2 cut(s) 828, 991
Hpy188I TCNGA 4 cut(s) 411, 814, 819, 911
Hpy188III TCNNGA 3 cut(s) 254, 353, 554
Hpy8I GTNNAC 2 cut(s) 828, 991
Hpy99I CGWCG 1 cut(s) 836
HpyAV CCTTC 2 cut(s) 189, 260
HpyCH4III ACNGT 3 cut(s) 154, 624, 861
HpyCH4V TGCA 6 cut(s) 76, 208, 326, 347, 371, 767
HpyF10VI GCNNNNNNNGC 1 cut(s) 389
HpyF3I CTNAG 2 cut(s) 270, 595
Hsp92I GRCGYC 1 cut(s) 834
Hsp92II CATG 3 cut(s) 123, 218, 351
HspAI GCGC 4 cut(s) 97, 576, 651, 750
Kzo9I GATC 3 cut(s) 556, 692, 814
LmnI GCTCC 2 cut(s) 11, 193
Lsp1109I GCAGC 3 cut(s) 331, 376, 759
LweI GCATC 4 cut(s) 195, 229, 313, 754
MaeI CTAG 1 cut(s) 569
MaeIII GTNAC 4 cut(s) 18, 562, 713, 932
MalI GATC 3 cut(s) 558, 694, 816
MboI GATC 3 cut(s) 556, 692, 814
MboII GAAGA 5 cut(s) 456, 459, 601, 766, 799
MflI RGATCY 1 cut(s) 556
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 5 cut(s) 14, 24, 484, 696, 892
MlyI GAGTC 2 cut(s) 143, 818
MmeI TCCRAC 4 cut(s) 82, 198, 792, 880
MnlI CCTC 7 cut(s) 19, 296, 302, 349, 604, 869, 911
Mph1103I ATGCAT 1 cut(s) 210
MseI TTAA 2 cut(s) 200, 299
MslI CAYNNNNRTG 1 cut(s) 213
MspA1I CMGCKG 1 cut(s) 281
MspI CCGG 1 cut(s) 642
MspR9I CCNGG 3 cut(s) 192, 492, 724
MvaI CCWGG 3 cut(s) 192, 492, 724
MvnI CGCG 4 cut(s) 97, 99, 115, 719
MwoI GCNNNNNNNGC 1 cut(s) 389
NdeII GATC 3 cut(s) 556, 692, 814
NlaIII CATG 3 cut(s) 123, 218, 351
NlaIV GGNNCC 1 cut(s) 592
NmuCI GTSAC 2 cut(s) 562, 713
NsiI ATGCAT 1 cut(s) 210
NspI RCATGY 2 cut(s) 123, 351
PaeR7I CTCGAG 1 cut(s) 902
PciI ACATGT 1 cut(s) 119
PfeI GAWTC 4 cut(s) 105, 398, 420, 503
PflMI CCANNNNNTGG 1 cut(s) 538
PkrI GCNGC 4 cut(s) 346, 391, 721, 749
PleI GAGTC 2 cut(s) 142, 817
PpsI GAGTC 2 cut(s) 142, 817
PscI ACATGT 1 cut(s) 119
Psp124BI GAGCTC 1 cut(s) 8
Psp6I CCWGG 3 cut(s) 190, 490, 722
PspFI CCCAGC 1 cut(s) 281
PspGI CCWGG 3 cut(s) 190, 490, 722
PspN4I GGNNCC 1 cut(s) 592
PspPI GGNCC 3 cut(s) 260, 284, 828
PspXI VCTCGAGB 1 cut(s) 902
PsuI RGATCY 1 cut(s) 556
RsaI GTAC 3 cut(s) 118, 516, 617
RsaNI GTAC 3 cut(s) 117, 515, 616
RseI CAYNNNNRTG 1 cut(s) 213
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 2 cut(s) 200, 299
SatI GCNGC 4 cut(s) 345, 390, 720, 748
Sau3AI GATC 3 cut(s) 556, 692, 814
Sau96I GGNCC 3 cut(s) 260, 284, 828
SchI GAGTC 2 cut(s) 143, 818
ScrFI CCNGG 3 cut(s) 192, 492, 724
SduI GDGCHC 1 cut(s) 8
SfaNI GCATC 4 cut(s) 195, 229, 313, 754
SfcI CTRYAG 1 cut(s) 35
Sfr274I CTCGAG 1 cut(s) 902
SinI GGWCC 1 cut(s) 828
SlaI CTCGAG 1 cut(s) 902
SmiMI CAYNNNNRTG 1 cut(s) 213
SmlI CTYRAG 3 cut(s) 552, 806, 902
SmoI CTYRAG 3 cut(s) 552, 806, 902
Sse9I AATT 5 cut(s) 14, 24, 484, 696, 892
SsiI CCGC 4 cut(s) 279, 719, 970, 986
SspMI CTAG 1 cut(s) 569
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 3 cut(s) 190, 490, 722
StyI CCWWGG 3 cut(s) 63, 82, 229
TaaI ACNGT 3 cut(s) 154, 624, 861
TaqI TCGA 4 cut(s) 339, 757, 903, 917
TaqII GACCGA 1 cut(s) 845
TasI AATT 5 cut(s) 14, 24, 484, 696, 892
TatI WGTACW 1 cut(s) 514
TauI GCSGC 1 cut(s) 722
TfiI GAWTC 4 cut(s) 105, 398, 420, 503
Tru1I TTAA 2 cut(s) 200, 299
Tru9I TTAA 2 cut(s) 200, 299
TseFI GTSAC 2 cut(s) 562, 713
TseI GCWGC 3 cut(s) 344, 389, 747
Tsp45I GTSAC 2 cut(s) 562, 713
TspGWI ACGGA 2 cut(s) 172, 391
Van91I CCANNNNNTGG 1 cut(s) 538
VpaK11BI GGWCC 1 cut(s) 828
XapI RAATTY 1 cut(s) 892
XceI RCATGY 2 cut(s) 123, 351
XcmI CCANNNNNNNNNTGG 1 cut(s) 67
XhoI CTCGAG 1 cut(s) 902
XspI CTAG 1 cut(s) 569
Zsp2I ATGCAT 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.