pycom10g26270

Mediator-associated protein 1-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
27638693 .. 27639853
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1161 bp
ATGGCTCCCAAGCGCCCATCTCCGCTGGACGAACCCCCGGCAGCTTCTTCGGCGGAGGATGAGGAAGTCTCGTCGGAAGAAGAAGGGGAAGAGGAGGAATCCGGATCTGGGTCGGATTCCGAACCCGAAGAGCCACTGCCTTCGAAGATCTCGTCTTCCGCACCGGTTTCCGAGAAAAAGCCGCCATCCAAGAAACCGGACTCCTCCGCCGCCAATTCGAAGCCGGAGTCTTCATCCTCTGGTTCCGAGGCCGATTCCGATTCCGATGTGGATAAGGATTTGGTGGTGAAGCCGATTGCCTCGAAGCCAATGGAAGAGACGCCGAAGACAAAGAAGCCCAGATCAAGGCCCGCGGCTACTGCTACGCCGGTGGTGAAATCTGGGTCGAAACGGCCGAGCGAGACCGAGCCCAAGGATTCAAAGCGGCTCAAGAAGAAGGAACCGGACCAGCTCGAGGAGGAAGCGAAGAAGTCCAAGCTGTTCCAGAGGATTTGGAGCGATGAGGATGAGATAATTATCTTGAAAGGCATGGTTGATTACACCACCAAGAAAGGGGCGGACCCGTATTCCGATATGGGTGCCTTCCATGAATTTATCAAGAAATCGCTGAAGGTTGATGTGAACAAAAACCAATTGCAAGATAAGATTCGTCGGCTGAAGAAGAAGTATGCGACCAATGTGAAGAAGAAGAAGTTTAATCCTACTAAAGCTCATGACCAGAAGGTGTTTGACTTGTCCAAGAAGGTATGGGGTAACAGCAGTAGCGGGGAAGGGTCGAGTGGTGTCAGCGGGCTGTCTGAACAGTCAAAGTCTAATGGGAAAGCTAGGAATACCAAGACTCTCGCTTCGATTAGAGCTGATAGTTTGAGCTCACCGGAGCCGCCAAAGGAGGCTGTGAAGGTGGATTTGGGTCTGAACCCGTGCTCTTCGGAAAGTTTGAGTGAGGTGATTGGGTTTGACAAGGGTTTCGGCGAGCTGGGGTTGCCGGAGGGTTTGGTGAAGCAGGGTTTGGAGTTGATTGGAGGGCCCAAGCGAGCTGAGTTGAAGGAGAAATGGAGGAAGCTGCATGTTGCTGAATTGGAGCTTTTTGTGAAGCGGTCCGAGTTAATGAGAGATCGGACGAAGGTGATTCTGGAGGCTTTAAATTCATCCGACCATTAG

Protein Analysis

387

Amino Acids

42.15

Weight (kDa)

8.22

Isoelectric Point (pI)

54.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GeBP-like_DBD PF04504 161 - 251 4.9e-35 Glabrous-enhancer-binding protein-like family, DBD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 578
AccII CGCG 1 cut(s) 353
AccIII TCCGGA 1 cut(s) 101
AclWI GGATC 1 cut(s) 112
AcoI YGGCCR 1 cut(s) 392
AcsI RAATTY 2 cut(s) 590, 1144
AcuI CTGAAG 2 cut(s) 629, 677
AcyI GRCGYC 1 cut(s) 320
AfiI CCNNNNNNNGG 4 cut(s) 108, 345, 454, 552
AgeI ACCGGT 1 cut(s) 163
AgsI TTSAA 3 cut(s) 420, 523, 1045
AjuI GAANNNNNNNTTGG 4 cut(s) 890, 922, 992, 1024
Alw21I GWGCWC 2 cut(s) 872, 926
Alw26I GTCTC 3 cut(s) 73, 311, 395
AlwI GGATC 1 cut(s) 112
Ama87I CYCGRG 1 cut(s) 452
Aor13HI TCCGGA 1 cut(s) 101
AoxI GGCC 4 cut(s) 249, 347, 392, 1025
ApaI GGGCCC 1 cut(s) 1029
ApeKI GCWGC 2 cut(s) 41, 1063
ApoI RAATTY 2 cut(s) 590, 1144
ArsI GACNNNNNNTTYG 8 cut(s) 137, 169, 212, 244, 829, 861, 950, 982
AsiGI ACCGGT 1 cut(s) 163
AspLEI GCGC 1 cut(s) 15
AspS9I GGNCC 6 cut(s) 348, 445, 559, 1025, 1026, 1098
AsuC2I CCSGG 1 cut(s) 38
AsuHPI GGTGA 6 cut(s) 298, 385, 864, 958, 1009, 1138
AsuII TTCGAA 2 cut(s) 143, 218
AvaI CYCGRG 1 cut(s) 452
AvaII GGWCC 3 cut(s) 445, 559, 1098
BaeGI GKGCMC 1 cut(s) 1029
BanI GGYRCC 1 cut(s) 578
BanII GRGCYC 3 cut(s) 411, 872, 1029
BbsI GAAGAC 3 cut(s) 147, 222, 332
Bbv12I GWGCWC 2 cut(s) 872, 926
BbvI GCAGC 2 cut(s) 53, 1050
BccI CCATC 2 cut(s) 25, 193
BceAI ACGGC 1 cut(s) 407
BcgI CGANNNNNNTGC 4 cut(s) 30, 64, 560, 594
BcnI CCSGG 1 cut(s) 38
BcoDI GTCTC 3 cut(s) 73, 311, 395
BfaI CTAG 1 cut(s) 825
BfoI RGCGCY 1 cut(s) 16
BglII AGATCT 1 cut(s) 147
BisI GCNGC 7 cut(s) 42, 182, 210, 354, 425, 881, 1064
BlsI GCNGC 7 cut(s) 43, 183, 211, 355, 426, 882, 1065
Bme1390I CCNGG 1 cut(s) 38
Bme18I GGWCC 3 cut(s) 445, 559, 1098
BmeT110I CYCGRG 1 cut(s) 452
BmgT120I GGNCC 6 cut(s) 348, 445, 559, 1025, 1026, 1098
BmiI GGNNCC 7 cut(s) 6, 244, 441, 561, 580, 879, 1027
BmrFI CCNGG 1 cut(s) 38
BpiI GAAGAC 3 cut(s) 147, 222, 332
BplI GAGNNNNNCTC 2 cut(s) 53, 85
BpmI CTGGAG 1 cut(s) 1154
Bpu14I TTCGAA 2 cut(s) 143, 218
BpuEI CTTGAG 1 cut(s) 413
BpuMI CCSGG 1 cut(s) 38
BsaBI GATNNNNATC 1 cut(s) 515
BsaHI GRCGYC 1 cut(s) 320
BsaI GGTCTC 1 cut(s) 395
BsaJI CCNNGG 4 cut(s) 36, 246, 351, 411
BsaWI WCCGGW 5 cut(s) 101, 163, 196, 442, 874
Bsc4I CCNNNNNNNGG 4 cut(s) 108, 345, 454, 552
Bse118I RCCGGY 2 cut(s) 163, 367
Bse8I GATNNNNATC 1 cut(s) 515
BseAI TCCGGA 1 cut(s) 101
BseDI CCNNGG 4 cut(s) 36, 246, 351, 411
BseGI GGATG 5 cut(s) 64, 185, 233, 511, 1148
BseJI GATNNNNATC 1 cut(s) 515
BseLI CCNNNNNNNGG 4 cut(s) 108, 345, 454, 552
BseMII CTCAG 1 cut(s) 1029
BseRI GAGGAG 3 cut(s) 107, 193, 470
BseSI GKGCMC 1 cut(s) 1029
BseX3I CGGCCG 1 cut(s) 392
BseXI GCAGC 2 cut(s) 53, 1050
BseYI CCCAGC 1 cut(s) 976
Bsh1236I CGCG 1 cut(s) 353
Bsh1285I CGRYCG 1 cut(s) 395
BshFI GGCC 4 cut(s) 251, 349, 394, 1027
BshNI GGYRCC 1 cut(s) 578
BshTI ACCGGT 1 cut(s) 163
BsiEI CGRYCG 1 cut(s) 395
BsiHKAI GWGCWC 2 cut(s) 872, 926
BsiHKCI CYCGRG 1 cut(s) 452
BsiSI CCGG 9 cut(s) 38, 102, 164, 197, 224, 368, 443, 875, 986
BslI CCNNNNNNNGG 4 cut(s) 108, 345, 454, 552
BsmAI GTCTC 3 cut(s) 73, 311, 395
BsmBI CGTCTC 1 cut(s) 311
BsnI GGCC 4 cut(s) 251, 349, 394, 1027
Bso31I GGTCTC 1 cut(s) 395
BsoBI CYCGRG 1 cut(s) 452
Bsp119I TTCGAA 2 cut(s) 143, 218
Bsp120I GGGCCC 1 cut(s) 1025
Bsp1286I GDGCHC 4 cut(s) 411, 872, 926, 1029
Bsp13I TCCGGA 1 cut(s) 101
Bsp143I GATC 4 cut(s) 104, 147, 341, 1114
BspANI GGCC 4 cut(s) 251, 349, 394, 1027
BspCNI CTCAG 1 cut(s) 1030
BspEI TCCGGA 1 cut(s) 101
BspFNI CGCG 1 cut(s) 353
BspHI TCATGA 1 cut(s) 712
BspLI GGNNCC 7 cut(s) 6, 244, 441, 561, 580, 879, 1027
BspPI GGATC 1 cut(s) 112
BspQI GCTCTTC 2 cut(s) 123, 931
BspT104I TTCGAA 2 cut(s) 143, 218
BspT107I GGYRCC 1 cut(s) 578
BspTNI GGTCTC 1 cut(s) 395
BsrFI RCCGGY 2 cut(s) 163, 367
BssAI RCCGGY 2 cut(s) 163, 367
BssECI CCNNGG 4 cut(s) 36, 246, 351, 411
BssMI GATC 4 cut(s) 104, 147, 341, 1114
BssNI GRCGYC 1 cut(s) 320
BssT1I CCWWGG 1 cut(s) 411
Bst4CI ACNGT 1 cut(s) 804
Bst6I CTCTTC 4 cut(s) 84, 123, 309, 931
BstACI GRCGYC 1 cut(s) 320
BstBI TTCGAA 2 cut(s) 143, 218
BstC8I GCNNGC 4 cut(s) 351, 791, 974, 1035
BstDEI CTNAG 1 cut(s) 1038
BstDSI CCRYGG 1 cut(s) 351
BstF5I GGATG 5 cut(s) 64, 185, 233, 511, 1148
BstFNI CGCG 1 cut(s) 353
BstH2I RGCGCY 1 cut(s) 16
BstHHI GCGC 1 cut(s) 15
BstKTI GATC 4 cut(s) 107, 150, 344, 1117
BstMAI GTCTC 3 cut(s) 73, 311, 395
BstMBI GATC 4 cut(s) 104, 147, 341, 1114
BstMCI CGRYCG 1 cut(s) 395
BstMWI GCNNNNNNNGC 3 cut(s) 50, 359, 982
BstNSI RCATGY 1 cut(s) 1070
BstSCI CCNGG 1 cut(s) 36
BstSLI GKGCMC 1 cut(s) 1029
BstUI CGCG 1 cut(s) 353
BstV1I GCAGC 2 cut(s) 53, 1050
BstV2I GAAGAC 3 cut(s) 147, 222, 332
BstX2I RGATCY 2 cut(s) 104, 147
BstYI RGATCY 2 cut(s) 104, 147
BstZI CGGCCG 1 cut(s) 392
BsuRI GGCC 4 cut(s) 251, 349, 394, 1027
BtgI CCRYGG 1 cut(s) 351
BtgZI GCGATG 1 cut(s) 513
BtsCI GGATG 5 cut(s) 64, 185, 233, 511, 1148
BtsI GCAGTG 1 cut(s) 134
BtsIMutI CAGTG 1 cut(s) 134
Cac8I GCNNGC 4 cut(s) 351, 791, 974, 1035
CciI TCATGA 1 cut(s) 712
CfoI GCGC 1 cut(s) 15
Cfr10I RCCGGY 2 cut(s) 163, 367
Cfr13I GGNCC 6 cut(s) 348, 445, 559, 1025, 1026, 1098
Cfr42I CCGCGG 1 cut(s) 354
CpoI CGGWCCG 1 cut(s) 1098
CseI GACGC 1 cut(s) 328
CspAI ACCGGT 1 cut(s) 163
CspI CGGWCCG 1 cut(s) 1098
CviAII CATG 4 cut(s) 529, 587, 713, 1067
DdeI CTNAG 1 cut(s) 1038
DpnI GATC 4 cut(s) 106, 149, 343, 1116
DpnII GATC 4 cut(s) 104, 147, 341, 1114
DraI TTTAAA 1 cut(s) 1143
EaeI YGGCCR 1 cut(s) 392
EagI CGGCCG 1 cut(s) 392
Eam1104I CTCTTC 4 cut(s) 84, 123, 309, 931
EarI CTCTTC 4 cut(s) 84, 123, 309, 931
EciI GGCGGA 3 cut(s) 68, 196, 572
Ecl136II GAGCTC 1 cut(s) 870
EclXI CGGCCG 1 cut(s) 392
Eco130I CCWWGG 1 cut(s) 411
Eco24I GRGCYC 3 cut(s) 411, 872, 1029
Eco31I GGTCTC 1 cut(s) 395
Eco47I GGWCC 3 cut(s) 445, 559, 1098
Eco52I CGGCCG 1 cut(s) 392
Eco53kI GAGCTC 1 cut(s) 870
Eco57I CTGAAG 2 cut(s) 629, 677
Eco88I CYCGRG 1 cut(s) 452
EcoICRI GAGCTC 1 cut(s) 870
EcoO109I RGGNCCY 1 cut(s) 1025
EcoT14I CCWWGG 1 cut(s) 411
EcoT38I GRGCYC 3 cut(s) 411, 872, 1029
ErhI CCWWGG 1 cut(s) 411
Esp3I CGTCTC 1 cut(s) 311
FaeI CATG 4 cut(s) 532, 590, 716, 1070
FaiI YATR 7 cut(s) 530, 575, 588, 669, 714, 748, 1068
FatI CATG 4 cut(s) 528, 586, 712, 1066
FauI CCCGC 3 cut(s) 358, 758, 782
Fnu4HI GCNGC 7 cut(s) 42, 182, 210, 354, 425, 881, 1064
FokI GGATG 5 cut(s) 71, 172, 220, 518, 1135
FriOI GRGCYC 3 cut(s) 411, 872, 1029
Fsp4HI GCNGC 7 cut(s) 42, 182, 210, 354, 425, 881, 1064
FspBI CTAG 1 cut(s) 825
GlaI GCGC 1 cut(s) 14
GluI GCNGC 7 cut(s) 42, 182, 210, 354, 425, 881, 1064
GsaI CCCAGC 1 cut(s) 980
GsuI CTGGAG 1 cut(s) 1154
HaeII RGCGCY 1 cut(s) 16
HaeIII GGCC 4 cut(s) 251, 349, 394, 1027
HapII CCGG 9 cut(s) 38, 102, 164, 197, 224, 368, 443, 875, 986
HgaI GACGC 1 cut(s) 328
HhaI GCGC 1 cut(s) 15
Hin1I GRCGYC 1 cut(s) 320
Hin1II CATG 4 cut(s) 532, 590, 716, 1070
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HpaII CCGG 9 cut(s) 38, 102, 164, 197, 224, 368, 443, 875, 986
HphI GGTGA 6 cut(s) 298, 385, 864, 958, 1009, 1138
Hpy166II GTNNAC 1 cut(s) 622
Hpy188III TCNNGA 7 cut(s) 102, 430, 484, 520, 598, 713, 1133
Hpy8I GTNNAC 1 cut(s) 622
Hpy99I CGWCG 2 cut(s) 76, 654
HpyCH4III ACNGT 1 cut(s) 804
HpyCH4V TGCA 2 cut(s) 637, 1066
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 359, 982
HpyF3I CTNAG 1 cut(s) 1038
Hsp92I GRCGYC 1 cut(s) 320
Hsp92II CATG 4 cut(s) 532, 590, 716, 1070
HspAI GCGC 1 cut(s) 13
Kpn2I TCCGGA 1 cut(s) 101
KspI CCGCGG 1 cut(s) 354
Kzo9I GATC 4 cut(s) 104, 147, 341, 1114
LguI GCTCTTC 2 cut(s) 123, 931
LmnI GCTCC 4 cut(s) 10, 495, 877, 1081
Lsp1109I GCAGC 2 cut(s) 53, 1050
MaeI CTAG 1 cut(s) 825
MaeIII GTNAC 1 cut(s) 752
MalI GATC 4 cut(s) 106, 149, 343, 1116
MboI GATC 4 cut(s) 104, 147, 341, 1114
MfeI CAATTG 1 cut(s) 632
MflI RGATCY 2 cut(s) 104, 147
MhlI GDGCHC 4 cut(s) 411, 872, 926, 1029
MluCI AATT 6 cut(s) 214, 513, 590, 632, 1076, 1144
MlyI GAGTC 3 cut(s) 194, 236, 832
MmeI TCCRAC 2 cut(s) 54, 93
MroI TCCGGA 1 cut(s) 101
MseI TTAA 3 cut(s) 696, 1106, 1142
MspA1I CMGCKG 3 cut(s) 25, 353, 789
MspI CCGG 9 cut(s) 38, 102, 164, 197, 224, 368, 443, 875, 986
MspR9I CCNGG 1 cut(s) 38
MunI CAATTG 1 cut(s) 632
MvnI CGCG 1 cut(s) 353
MwoI GCNNNNNNNGC 3 cut(s) 50, 359, 982
NciI CCSGG 1 cut(s) 38
NdeII GATC 4 cut(s) 104, 147, 341, 1114
NlaIII CATG 4 cut(s) 532, 590, 716, 1070
NlaIV GGNNCC 7 cut(s) 6, 244, 441, 561, 580, 879, 1027
NmeAIII GCCGAG 1 cut(s) 420
NspI RCATGY 1 cut(s) 1070
NspV TTCGAA 2 cut(s) 143, 218
PaeR7I CTCGAG 1 cut(s) 452
PagI TCATGA 1 cut(s) 712
PciSI GCTCTTC 2 cut(s) 123, 931
PcsI WCGNNNNNNNCGW 2 cut(s) 149, 392
PfeI GAWTC 7 cut(s) 98, 116, 254, 260, 416, 646, 1129
PinAI ACCGGT 1 cut(s) 163
PkrI GCNGC 7 cut(s) 43, 183, 211, 355, 426, 882, 1065
PleI GAGTC 3 cut(s) 194, 235, 832
PpsI GAGTC 3 cut(s) 194, 235, 832
Psp124BI GAGCTC 1 cut(s) 872
PspFI CCCAGC 1 cut(s) 976
PspN4I GGNNCC 7 cut(s) 6, 244, 441, 561, 580, 879, 1027
PspOMI GGGCCC 1 cut(s) 1025
PspPI GGNCC 6 cut(s) 348, 445, 559, 1025, 1026, 1098
PspXI VCTCGAGB 1 cut(s) 452
PsuI RGATCY 2 cut(s) 104, 147
Rsr2I CGGWCCG 1 cut(s) 1098
RsrII CGGWCCG 1 cut(s) 1098
SacI GAGCTC 1 cut(s) 872
SacII CCGCGG 1 cut(s) 354
SapI GCTCTTC 2 cut(s) 123, 931
SaqAI TTAA 3 cut(s) 696, 1106, 1142
SatI GCNGC 7 cut(s) 42, 182, 210, 354, 425, 881, 1064
Sau3AI GATC 4 cut(s) 104, 147, 341, 1114
Sau96I GGNCC 6 cut(s) 348, 445, 559, 1025, 1026, 1098
SchI GAGTC 3 cut(s) 194, 236, 832
ScrFI CCNGG 1 cut(s) 38
SduI GDGCHC 4 cut(s) 411, 872, 926, 1029
Sfr274I CTCGAG 1 cut(s) 452
Sfr303I CCGCGG 1 cut(s) 354
SfuI TTCGAA 2 cut(s) 143, 218
SgrAI CRCCGGYG 1 cut(s) 367
SgrBI CCGCGG 1 cut(s) 354
SinI GGWCC 3 cut(s) 445, 559, 1098
SlaI CTCGAG 1 cut(s) 452
SmlI CTYRAG 2 cut(s) 428, 452
SmoI CTYRAG 2 cut(s) 428, 452
Sse9I AATT 6 cut(s) 214, 513, 590, 632, 1076, 1144
SspMI CTAG 1 cut(s) 825
SstI GAGCTC 1 cut(s) 872
StyD4I CCNGG 1 cut(s) 36
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 1 cut(s) 804
TaqI TCGA 7 cut(s) 143, 218, 302, 386, 453, 776, 848
TaqII GACCGA 1 cut(s) 419
TasI AATT 6 cut(s) 214, 513, 590, 632, 1076, 1144
TauI GCSGC 5 cut(s) 184, 212, 356, 427, 883
TfiI GAWTC 7 cut(s) 98, 116, 254, 260, 416, 646, 1129
Tru1I TTAA 3 cut(s) 696, 1106, 1142
Tru9I TTAA 3 cut(s) 696, 1106, 1142
TscAI CASTG 1 cut(s) 141
TseI GCWGC 2 cut(s) 41, 1063
TspDTI ATGAA 3 cut(s) 222, 603, 1137
TspRI CASTG 1 cut(s) 141
VpaK11BI GGWCC 3 cut(s) 445, 559, 1098
XapI RAATTY 2 cut(s) 590, 1144
XceI RCATGY 1 cut(s) 1070
XhoI CTCGAG 1 cut(s) 452
XspI CTAG 1 cut(s) 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.