Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003482

Physical Location & Seq

Genomic Coordinates Forward (+)

29470518 .. 29471246

Gene Structure 729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGAACAGGGGAGGCAGGGCAAGCCAGATGGTAGATCTGGTCGACCTCGAGCAGAAGTGGCTCAACGACGTCGTGTCGGATGAGCTCGAATCTCGGGTTCCCGAAATGGTGCATCACATTCTCCTTCCTTCCCGTGAAGAAGTTGTCCACCACGATCACGCTGTCGCCTCGCGCAATCAGACGGTCAACAAGGTGCGACCCGACGAACCCGGCCCCGCCCGTCACGACGATCCGGAGCCCCTTTCGTTTCAGCCCCAGTGGCACCTTCCCGCTAGAACCCCAGCTAGTCAACCCGAATCTTCGTTCGTAGGCCGGCTTGTACTGGGTCGTCCCCGACGAATCGAAGTCGTACCGGACGTAGTTCGAGATCGGTACGTTGCCGGAGGCGTAAGGAGAGCCGGGGGTGGAGGATGGGAGGAGGGTGAACCCTACGGTGGCGATAACAATGCCGACGAGGATGAAAACGAGGCGCTGCTCTCGGAGCAAGTACTGAATCGGGCGGGTCACGGAGGCCCACGGCTTTGGGCGTTTGGGCGAATAGGTGTCCGCCACATGTTGGTCGGCTTCGTGCCCTCGGAAAATCAGCTCCGAACCCATTTGTCGGAACTGTGTCGGAAGAAGCAGAGTGAGTTTAGAGTTTCTGAGTCGGACGAGTTGGAATCGCCGGCAACTCGCTTTGTGGCGGGTTTTCGTGATGCGGTCTCACTCGTGTATGTTCCGGGTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

243

Amino Acids

27.02

Weight (kDa)

5.6

Isoelectric Point (pI)

61.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003482)

Species	Orthologous Gene IDs
malus_domestica	MD11G1310000.v1.1
pyrus_communis	pycom03g22820 pycom11g27090
rosa_chinensis	RchiOBHm_Chr1g0369641 RchiOBHm_Chr2g0152691 RchiOBHm_Chr3g0456121 RchiOBHm_Chr5g0034131 RchiOBHm_Chr7g0201231
rosa_laevigata	RLG00000001246 RLG00000007824 RLG00000008707 RLG00000010725 RLG00000017996 RLG00000023063 RLG00000028796 RLG00000031575 RLG00000032570
rosa_multiflora	Rmu_sc0002058.1_g000010 Rmu_sc0006422.1_g000032 Rmu_sc0016279.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004820 Rroxscaffold_2G00087020 Rroxscaffold_3G00227600
rosa_samantha	Rh1DG047500 Rh2DG294900 Rh3BG159500 Rh3CG159500 Rh3DG160000 Rh4AG026900 Rh5CG266100 Rh5DG574800 Rh6AG290600 Rh6BG483100 Rh6CG226900 Rh7CG200200 Rh7DG194300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	72
AccB1I	GGYRCC	1 cut(s)	261
AccB7I	CCANNNNNTGG	1 cut(s)	556
AccI	GTMKAC	1 cut(s)	42
AccII	CGCG	1 cut(s)	172
AccIII	TCCGGA	1 cut(s)	232
AciI	CCGC	6 cut(s)	216, 270, 500, 547, 683, 698
AclWI	GGATC	1 cut(s)	224
AcyI	GRCGYC	1 cut(s)	69
AfaI	GTAC	4 cut(s)	321, 351, 374, 489
AfiI	CCNNNNNNNGG	3 cut(s)	434, 556, 601
AflIII	ACRYGT	1 cut(s)	552
AhdI	GACNNNNNGTC	1 cut(s)	73
AluBI	AGCT	3 cut(s)	85, 284, 586
AluI	AGCT	3 cut(s)	85, 284, 586
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	706
AlwI	GGATC	1 cut(s)	224
Ama87I	CYCGRG	2 cut(s)	47, 93
Aor13HI	TCCGGA	1 cut(s)	232
AoxI	GGCC	3 cut(s)	211, 310, 511
ApeKI	GCWGC	1 cut(s)	472
AspLEI	GCGC	2 cut(s)	174, 472
AspS9I	GGNCC	2 cut(s)	212, 512
AsuC2I	CCSGG	3 cut(s)	210, 400, 720
AsuHPI	GGTGA	1 cut(s)	434
AvaI	CYCGRG	2 cut(s)	47, 93
BaeGI	GKGCMC	1 cut(s)	573
BanI	GGYRCC	1 cut(s)	261
BanII	GRGCYC	2 cut(s)	87, 240
BauI	CACGAG	1 cut(s)	707
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	459
BccI	CCATC	2 cut(s)	22, 405
BceAI	ACGGC	1 cut(s)	533
BcgI	CGANNNNNNTGC	2 cut(s)	428, 462
BcnI	CCSGG	3 cut(s)	210, 400, 720
BcoDI	GTCTC	1 cut(s)	706
BfaI	CTAG	2 cut(s)	273, 285
BfoI	RGCGCY	1 cut(s)	473
BglI	GCCNNNNNGGC	1 cut(s)	259
BglII	AGATCT	1 cut(s)	34
BisI	GCNGC	1 cut(s)	473
BlsI	GCNGC	1 cut(s)	474
BmcAI	AGTACT	1 cut(s)	489
Bme1390I	CCNGG	3 cut(s)	210, 400, 720
BmeRI	GACNNNNNGTC	1 cut(s)	73
BmeT110I	CYCGRG	2 cut(s)	47, 93
BmgT120I	GGNCC	2 cut(s)	212, 512
BmiI	GGNNCC	4 cut(s)	99, 214, 237, 263
BmrFI	CCNGG	3 cut(s)	210, 400, 720
BmrI	ACTGGG	2 cut(s)	250, 332
BmsI	GCATC	2 cut(s)	121, 685
BmuI	ACTGGG	2 cut(s)	250, 332
BpuMI	CCSGG	3 cut(s)	210, 400, 720
BsaHI	GRCGYC	1 cut(s)	69
BsaI	GGTCTC	1 cut(s)	706
BsaJI	CCNNGG	3 cut(s)	399, 515, 573
BsaWI	WCCGGW	2 cut(s)	232, 352
Bsc4I	CCNNNNNNNGG	3 cut(s)	434, 556, 601
Bse118I	RCCGGY	2 cut(s)	312, 664
Bse1I	ACTGG	2 cut(s)	256, 327
BseAI	TCCGGA	1 cut(s)	232
BseDI	CCNNGG	3 cut(s)	399, 515, 573
BseGI	GGATG	3 cut(s)	85, 416, 463
BseLI	CCNNNNNNNGG	3 cut(s)	434, 556, 601
BseMII	CTCAG	1 cut(s)	633
BseNI	ACTGG	2 cut(s)	256, 327
BseRI	GAGGAG	1 cut(s)	431
BseSI	GKGCMC	1 cut(s)	573
BseXI	GCAGC	1 cut(s)	459
BseYI	CCCAGC	1 cut(s)	280
Bsh1236I	CGCG	1 cut(s)	172
BshFI	GGCC	3 cut(s)	213, 312, 513
BshNI	GGYRCC	1 cut(s)	261
BsiHKAI	GWGCWC	1 cut(s)	87
BsiHKCI	CYCGRG	2 cut(s)	47, 93
BsiSI	CCGG	8 cut(s)	210, 233, 313, 353, 381, 399, 665, 719
BslFI	GGGAC	1 cut(s)	315
BslI	CCNNNNNNNGG	3 cut(s)	434, 556, 601
BsmAI	GTCTC	1 cut(s)	706
BsmFI	GGGAC	1 cut(s)	315
BsnI	GGCC	3 cut(s)	213, 312, 513
Bso31I	GGTCTC	1 cut(s)	706
BsoBI	CYCGRG	2 cut(s)	47, 93
Bsp1286I	GDGCHC	3 cut(s)	87, 240, 573
Bsp13I	TCCGGA	1 cut(s)	232
Bsp143I	GATC	4 cut(s)	34, 154, 229, 367
BspACI	CCGC	6 cut(s)	216, 270, 500, 547, 683, 698
BspANI	GGCC	3 cut(s)	213, 312, 513
BspCNI	CTCAG	1 cut(s)	634
BspEI	TCCGGA	1 cut(s)	232
BspFNI	CGCG	1 cut(s)	172
BspLI	GGNNCC	4 cut(s)	99, 214, 237, 263
BspPI	GGATC	1 cut(s)	224
BspT107I	GGYRCC	1 cut(s)	261
BspTNI	GGTCTC	1 cut(s)	706
BsrFI	RCCGGY	2 cut(s)	312, 664
BsrI	ACTGG	2 cut(s)	256, 327
BssAI	RCCGGY	2 cut(s)	312, 664
BssECI	CCNNGG	3 cut(s)	399, 515, 573
BssMI	GATC	4 cut(s)	34, 154, 229, 367
BssNI	GRCGYC	1 cut(s)	69
BssSI	CACGAG	1 cut(s)	707
Bst2BI	CACGAG	1 cut(s)	707
Bst4CI	ACNGT	3 cut(s)	184, 434, 609
BstACI	GRCGYC	1 cut(s)	69
BstC8I	GCNNGC	3 cut(s)	22, 314, 666
BstDEI	CTNAG	1 cut(s)	642
BstDSI	CCRYGG	1 cut(s)	515
BstF5I	GGATG	3 cut(s)	85, 416, 463
BstFNI	CGCG	1 cut(s)	172
BstH2I	RGCGCY	1 cut(s)	473
BstHHI	GCGC	2 cut(s)	174, 472
BstKTI	GATC	4 cut(s)	37, 157, 232, 370
BstMAI	GTCTC	1 cut(s)	706
BstMBI	GATC	4 cut(s)	34, 154, 229, 367
BstMWI	GCNNNNNNNGC	4 cut(s)	21, 58, 259, 481
BstNSI	RCATGY	1 cut(s)	556
BstSCI	CCNGG	3 cut(s)	208, 398, 718
BstSLI	GKGCMC	1 cut(s)	573
BstUI	CGCG	1 cut(s)	172
BstV1I	GCAGC	1 cut(s)	459
BstX2I	RGATCY	1 cut(s)	34
BstXI	CCANNNNNNTGG	1 cut(s)	522
BstYI	RGATCY	1 cut(s)	34
BsuRI	GGCC	3 cut(s)	213, 312, 513
BtgI	CCRYGG	1 cut(s)	515
BtsCI	GGATG	3 cut(s)	85, 416, 463
BtsIMutI	CAGTG	1 cut(s)	263
Cac8I	GCNNGC	3 cut(s)	22, 314, 666
CfoI	GCGC	2 cut(s)	174, 472
Cfr10I	RCCGGY	2 cut(s)	312, 664
Cfr13I	GGNCC	2 cut(s)	212, 512
Csp6I	GTAC	4 cut(s)	320, 350, 373, 488
CviAII	CATG	1 cut(s)	553
CviQI	GTAC	4 cut(s)	320, 350, 373, 488
DdeI	CTNAG	1 cut(s)	642
DpnI	GATC	4 cut(s)	36, 156, 231, 369
DpnII	GATC	4 cut(s)	34, 154, 229, 367
DriI	GACNNNNNGTC	1 cut(s)	73
Eam1105I	GACNNNNNGTC	1 cut(s)	73
EciI	GGCGGA	1 cut(s)	536
Ecl136II	GAGCTC	1 cut(s)	85
Eco24I	GRGCYC	2 cut(s)	87, 240
Eco31I	GGTCTC	1 cut(s)	706
Eco53kI	GAGCTC	1 cut(s)	85
Eco88I	CYCGRG	2 cut(s)	47, 93
EcoICRI	GAGCTC	1 cut(s)	85
EcoT38I	GRGCYC	2 cut(s)	87, 240
FaeI	CATG	1 cut(s)	556
FaiI	YATR	2 cut(s)	554, 714
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	1 cut(s)	552
FauI	CCCGC	4 cut(s)	223, 277, 493, 676
FblI	GTMKAC	1 cut(s)	42
Fnu4HI	GCNGC	1 cut(s)	473
FokI	GGATG	3 cut(s)	92, 423, 470
FriOI	GRGCYC	2 cut(s)	87, 240
Fsp4HI	GCNGC	1 cut(s)	473
FspBI	CTAG	2 cut(s)	273, 285
GlaI	GCGC	2 cut(s)	173, 471
GluI	GCNGC	1 cut(s)	473
GsaI	CCCAGC	1 cut(s)	284
HaeII	RGCGCY	1 cut(s)	473
HaeIII	GGCC	3 cut(s)	213, 312, 513
HapII	CCGG	8 cut(s)	210, 233, 313, 353, 381, 399, 665, 719
HhaI	GCGC	2 cut(s)	174, 472
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	1 cut(s)	556
Hin6I	GCGC	2 cut(s)	172, 470
HinP1I	GCGC	2 cut(s)	172, 470
HincII	GTYRAC	3 cut(s)	43, 187, 290
HindII	GTYRAC	3 cut(s)	43, 187, 290
HinfI	GANTC	6 cut(s)	89, 296, 339, 493, 644, 659
HpaII	CCGG	8 cut(s)	210, 233, 313, 353, 381, 399, 665, 719
HphI	GGTGA	1 cut(s)	434
Hpy166II	GTNNAC	5 cut(s)	43, 148, 187, 290, 425
Hpy188I	TCNGA	9 cut(s)	79, 180, 481, 577, 590, 604, 615, 643, 649
Hpy188III	TCNNGA	5 cut(s)	101, 224, 233, 365, 692
Hpy8I	GTNNAC	5 cut(s)	43, 148, 187, 290, 425
Hpy99I	CGWCG	6 cut(s)	71, 74, 206, 230, 339, 455
HpyAV	CCTTC	3 cut(s)	134, 138, 275
HpyCH4III	ACNGT	3 cut(s)	184, 434, 609
HpyCH4IV	ACGT	3 cut(s)	69, 357, 375
HpyCH4V	TGCA	1 cut(s)	112
HpyF10VI	GCNNNNNNNGC	4 cut(s)	21, 58, 259, 481
HpyF3I	CTNAG	1 cut(s)	642
HpySE526I	ACGT	3 cut(s)	69, 357, 375
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	1 cut(s)	556
HspAI	GCGC	2 cut(s)	172, 470
Kpn2I	TCCGGA	1 cut(s)	232
KroI	GCCGGC	2 cut(s)	312, 664
KroNI	GCCGGC	2 cut(s)	314, 666
Kzo9I	GATC	4 cut(s)	34, 154, 229, 367
LmnI	GCTCC	3 cut(s)	235, 481, 591
Lsp1109I	GCAGC	1 cut(s)	459
LweI	GCATC	2 cut(s)	121, 685
MaeI	CTAG	2 cut(s)	273, 285
MaeII	ACGT	3 cut(s)	69, 357, 375
MaeIII	GTNAC	2 cut(s)	221, 503
MalI	GATC	4 cut(s)	36, 156, 231, 369
MboI	GATC	4 cut(s)	34, 154, 229, 367
MboII	GAAGA	3 cut(s)	149, 291, 628
MflI	RGATCY	1 cut(s)	34
MhlI	GDGCHC	3 cut(s)	87, 240, 573
MlyI	GAGTC	1 cut(s)	653
MmeI	TCCRAC	5 cut(s)	57, 582, 593, 627, 636
MroI	TCCGGA	1 cut(s)	232
MroNI	GCCGGC	2 cut(s)	312, 664
MseI	TTAA	1 cut(s)	727
MspI	CCGG	8 cut(s)	210, 233, 313, 353, 381, 399, 665, 719
MspR9I	CCNGG	3 cut(s)	210, 400, 720
MvnI	CGCG	1 cut(s)	172
MwoI	GCNNNNNNNGC	4 cut(s)	21, 58, 259, 481
NaeI	GCCGGC	2 cut(s)	314, 666
NciI	CCSGG	3 cut(s)	210, 400, 720
NdeII	GATC	4 cut(s)	34, 154, 229, 367
NgoMIV	GCCGGC	2 cut(s)	312, 664
NlaIII	CATG	1 cut(s)	556
NlaIV	GGNNCC	4 cut(s)	99, 214, 237, 263
NmuCI	GTSAC	2 cut(s)	221, 503
NspI	RCATGY	1 cut(s)	556
PaeR7I	CTCGAG	1 cut(s)	47
PciI	ACATGT	1 cut(s)	552
PcsI	WCGNNNNNNNCGW	2 cut(s)	334, 354
PdiI	GCCGGC	2 cut(s)	314, 666
PfeI	GAWTC	5 cut(s)	89, 296, 339, 493, 659
PflMI	CCANNNNNTGG	1 cut(s)	556
PkrI	GCNGC	1 cut(s)	474
PleI	GAGTC	1 cut(s)	652
PpsI	GAGTC	1 cut(s)	652
PscI	ACATGT	1 cut(s)	552
Psp124BI	GAGCTC	1 cut(s)	87
PspFI	CCCAGC	1 cut(s)	280
PspN4I	GGNNCC	4 cut(s)	99, 214, 237, 263
PspPI	GGNCC	2 cut(s)	212, 512
PspXI	VCTCGAGB	1 cut(s)	47
PsuI	RGATCY	1 cut(s)	34
RsaI	GTAC	4 cut(s)	321, 351, 374, 489
RsaNI	GTAC	4 cut(s)	320, 350, 373, 488
SacI	GAGCTC	1 cut(s)	87
SalI	GTCGAC	1 cut(s)	41
SaqAI	TTAA	1 cut(s)	727
SatI	GCNGC	1 cut(s)	473
Sau3AI	GATC	4 cut(s)	34, 154, 229, 367
Sau96I	GGNCC	2 cut(s)	212, 512
ScaI	AGTACT	1 cut(s)	489
SchI	GAGTC	1 cut(s)	653
ScrFI	CCNGG	3 cut(s)	210, 400, 720
SduI	GDGCHC	3 cut(s)	87, 240, 573
SfaNI	GCATC	2 cut(s)	121, 685
Sfr274I	CTCGAG	1 cut(s)	47
SlaI	CTCGAG	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
SsiI	CCGC	6 cut(s)	216, 270, 500, 547, 683, 698
SspMI	CTAG	2 cut(s)	273, 285
SstI	GAGCTC	1 cut(s)	87
StyD4I	CCNGG	3 cut(s)	208, 398, 718
TaaI	ACNGT	3 cut(s)	184, 434, 609
TaiI	ACGT	3 cut(s)	72, 360, 378
TaqI	TCGA	5 cut(s)	42, 48, 87, 342, 364
TatI	WGTACW	2 cut(s)	319, 487
TfiI	GAWTC	5 cut(s)	89, 296, 339, 493, 659
Tru1I	TTAA	1 cut(s)	727
Tru9I	TTAA	1 cut(s)	727
TscAI	CASTG	1 cut(s)	263
TseFI	GTSAC	2 cut(s)	221, 503
TseI	GCWGC	1 cut(s)	472
Tsp45I	GTSAC	2 cut(s)	221, 503
TspDTI	ATGAA	2 cut(s)	17, 474
TspGWI	ACGGA	1 cut(s)	522
TspRI	CASTG	1 cut(s)	263
Van91I	CCANNNNNTGG	1 cut(s)	556
XceI	RCATGY	1 cut(s)	556
XhoI	CTCGAG	1 cut(s)	47
XmiI	GTMKAC	1 cut(s)	42
XspI	CTAG	2 cut(s)	273, 285
ZraI	GACGTC	1 cut(s)	70
ZrmI	AGTACT	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.