Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002158

Physical Location & Seq

Genomic Coordinates Forward (+)

7376638 .. 7378645

Gene Structure 2008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g10710.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGAAGCAATTGAAAGGAAGTTTTGACTGCTGCTGCGCTCCCTCAACGCTCATTTTTTACACATCGCAACTTCGATCCGATCCCCGCTCCAATCCGCCAAACAGGCGTTCAGTGTACTTTTGTGTGAAAGAATCAAAGATGTTGGGAATTTTAAGGCAAAAAGTGGGAGCTGGAAGCCCGTCAGCTATGATTTTGGGGCAGAGGATCTGCCCTGCCACGTCGGCAATGAGGGGTTTCGCATCTTCGGCGAAAGAGATGACAGTGAGGGATGCTCTAAACTCTGCGCTCGATGAGGAAATGTCCGCGGACCCAAAAGTGTTTTTGATGGGTGAAGAGGTTGGGGAATATCAAGGTGCTTACAAGATAACCAAAGGACTTCTGGACAAGTATGGCCCTGACAGGGTTCGTGATACCCCAATCACCGAGGCTGGGTTTACAGGGATTGGAGTTGGTGCTGCTTACTATGGTTTGAGACCTGTTATAGAGTTTATGACCTTTAACTTCTCAATGCAGGCAATTGACCACATCATCAATTCTGCTGCAAAATCAAATTATATGTCTGCTGGCCAAATAAATGTGCCCATTGTTTTCAGAGGACCAAACGGTGCTGCTGCTGGTGTTGGTGCCCAGCATTCTCAAGTATTTGTTATGCAGCATGGTATGCAACCTGCCCTGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko04066 ko04922 ko05230 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200 map04066 map04922 map05230

Pfam Domains

Protein Families

Transket_pyr Transketolase_C

Protein Analysis

227

Amino Acids

24.35

Weight (kDa)

8.96

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002158)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g10710
rosa_chinensis	RchiOBHm_Chr1g0352931 RchiOBHm_Chr1g0379931 RchiOBHm_Chr2g0127521 RchiOBHm_Chr5g0077921 RchiOBHm_Chr6g0254011 RchiOBHm_Chr7g0224991
rosa_laevigata	RLG00000010747 RLG00000036727
rosa_multiflora	Rmu_co8264081.1_g000001 Rmu_co8475729.1_g000001 Rmu_sc0000512.1_g000010 Rmu_sc0002563.1_g000056 Rmu_sc0003651.1_g000010 Rmu_sc0008382.1_g000016 Rmu_sc0011010.1_g000011 Rmu_sc0014844.1_g000012 Rmu_sc0017063.1_g000001 Rmu_sc0019512.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012710 Rroxscaffold_7G00161280
rosa_rugosa	Rorug01G0236000 Rorug02G0221700
rosa_samantha	Rh1BG320400 Rh1CG044300 Rh1CG334400 Rh1DG351000 Rh2AG096900 Rh2AG182700 Rh2BG335100 Rh2CG313300 Rh2CG351300 Rh2DG352700 Rh2DG390400 Rh3BG073400 Rh4CG209000 Rh5AG316800 Rh5AG511900 Rh6BG273400 Rh6BG434200 Rh6DG468100
rosa_wichuraiana	Rw2G026410 Rw4G021840 Rw6G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	676
AccB1I	GGYRCC	1 cut(s)	623
AccBSI	CCGCTC	1 cut(s)	87
AccII	CGCG	1 cut(s)	305
AciI	CCGC	4 cut(s)	85, 95, 303, 305
AclWI	GGATC	3 cut(s)	69, 74, 212
AcoI	YGGCCR	1 cut(s)	565
AcsI	RAATTY	1 cut(s)	147
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	3 cut(s)	400, 429, 674
AgsI	TTSAA	1 cut(s)	13
AjiI	CACGTC	1 cut(s)	219
AjnI	CCWGG	1 cut(s)	672
AjuI	GAANNNNNNNTTGG	2 cut(s)	91, 123
AluBI	AGCT	2 cut(s)	170, 185
AluI	AGCT	2 cut(s)	170, 185
Alw26I	GTCTC	1 cut(s)	466
AlwI	GGATC	3 cut(s)	69, 74, 212
AoxI	GGCC	2 cut(s)	391, 565
ApeKI	GCWGC	7 cut(s)	30, 33, 455, 539, 608, 611, 652
ApoI	RAATTY	1 cut(s)	147
ArsI	GACNNNNNNTTYG	2 cut(s)	542, 574
AspLEI	GCGC	2 cut(s)	38, 286
AspS9I	GGNCC	3 cut(s)	307, 392, 596
AsuHPI	GGTGA	2 cut(s)	341, 412
AvaII	GGWCC	2 cut(s)	307, 596
BaeGI	GKGCMC	2 cut(s)	582, 628
BalI	TGGCCA	1 cut(s)	567
BanI	GGYRCC	1 cut(s)	623
BbvI	GCAGC	7 cut(s)	17, 20, 442, 526, 595, 598, 664
BccI	CCATC	1 cut(s)	319
BciT130I	CCWGG	1 cut(s)	674
BcoDI	GTCTC	1 cut(s)	466
BfuAI	ACCTGC	1 cut(s)	676
BglI	GCCNNNNNGGC	2 cut(s)	103, 221
BisI	GCNGC	7 cut(s)	31, 34, 456, 540, 609, 612, 653
BlsI	GCNGC	7 cut(s)	32, 35, 457, 541, 610, 613, 654
Bme1390I	CCNGG	1 cut(s)	674
Bme18I	GGWCC	2 cut(s)	307, 596
BmgBI	CACGTC	1 cut(s)	219
BmgT120I	GGNCC	3 cut(s)	307, 392, 596
BmiI	GGNNCC	2 cut(s)	309, 625
BmrFI	CCNGG	1 cut(s)	674
BmsI	GCATC	2 cut(s)	248, 259
BplI	GAGNNNNNCTC	2 cut(s)	256, 288
BpuEI	CTTGAG	1 cut(s)	621
BsaI	GGTCTC	1 cut(s)	466
BsaJI	CCNNGG	4 cut(s)	303, 423, 672, 673
Bsc4I	CCNNNNNNNGG	3 cut(s)	400, 429, 674
Bse3DI	GCAATG	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	674
BseDI	CCNNGG	4 cut(s)	303, 423, 672, 673
BseGI	GGATG	1 cut(s)	274
BseLI	CCNNNNNNNGG	3 cut(s)	400, 429, 674
BseMI	GCAATG	1 cut(s)	231
BseSI	GKGCMC	2 cut(s)	582, 628
BseXI	GCAGC	7 cut(s)	17, 20, 442, 526, 595, 598, 664
BseYI	CCCAGC	2 cut(s)	428, 627
Bsh1236I	CGCG	1 cut(s)	305
BshFI	GGCC	2 cut(s)	393, 567
BshNI	GGYRCC	1 cut(s)	623
BslI	CCNNNNNNNGG	3 cut(s)	400, 429, 674
BsmAI	GTCTC	1 cut(s)	466
BsmI	GAATGC	1 cut(s)	631
BsnI	GGCC	2 cut(s)	393, 567
Bso31I	GGTCTC	1 cut(s)	466
Bsp1286I	GDGCHC	2 cut(s)	582, 628
Bsp143I	GATC	3 cut(s)	74, 79, 204
BspACI	CCGC	4 cut(s)	85, 95, 303, 305
BspANI	GGCC	2 cut(s)	393, 567
BspFNI	CGCG	1 cut(s)	305
BspLI	GGNNCC	2 cut(s)	309, 625
BspMI	ACCTGC	1 cut(s)	676
BspPI	GGATC	3 cut(s)	69, 74, 212
BspT107I	GGYRCC	1 cut(s)	623
BspTNI	GGTCTC	1 cut(s)	466
BsrBI	CCGCTC	1 cut(s)	87
BsrDI	GCAATG	1 cut(s)	231
BssECI	CCNNGG	4 cut(s)	303, 423, 672, 673
BssMI	GATC	3 cut(s)	74, 79, 204
Bst2UI	CCWGG	1 cut(s)	674
Bst4CI	ACNGT	2 cut(s)	262, 605
Bst6I	CTCTTC	1 cut(s)	327
BstAPI	GCANNNNNTGC	1 cut(s)	661
BstC8I	GCNNGC	2 cut(s)	513, 565
BstDSI	CCRYGG	1 cut(s)	303
BstF5I	GGATG	1 cut(s)	274
BstFNI	CGCG	1 cut(s)	305
BstHHI	GCGC	2 cut(s)	38, 286
BstKTI	GATC	3 cut(s)	77, 82, 207
BstMAI	GTCTC	1 cut(s)	466
BstMBI	GATC	3 cut(s)	74, 79, 204
BstMWI	GCNNNNNNNGC	4 cut(s)	103, 221, 245, 661
BstNI	CCWGG	1 cut(s)	674
BstSCI	CCNGG	1 cut(s)	672
BstSLI	GKGCMC	2 cut(s)	582, 628
BstUI	CGCG	1 cut(s)	305
BstV1I	GCAGC	7 cut(s)	17, 20, 442, 526, 595, 598, 664
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
BsuRI	GGCC	2 cut(s)	393, 567
BtgI	CCRYGG	1 cut(s)	303
BtgZI	GCGATG	1 cut(s)	48
BtrI	CACGTC	1 cut(s)	219
BtsCI	GGATG	1 cut(s)	274
BtsIMutI	CAGTG	2 cut(s)	117, 267
BveI	ACCTGC	1 cut(s)	676
Cac8I	GCNNGC	2 cut(s)	513, 565
CfoI	GCGC	2 cut(s)	38, 286
Cfr13I	GGNCC	3 cut(s)	307, 392, 596
Cfr42I	CCGCGG	1 cut(s)	306
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	1 cut(s)	656
CviJI	RGCY	6 cut(s)	170, 177, 185, 393, 428, 567
CviKI_1	RGCY	6 cut(s)	170, 177, 185, 393, 428, 567
CviQI	GTAC	1 cut(s)	115
DpnI	GATC	3 cut(s)	76, 81, 206
DpnII	GATC	3 cut(s)	74, 79, 204
EaeI	YGGCCR	1 cut(s)	565
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
EciI	GGCGGA	1 cut(s)	84
Eco31I	GGTCTC	1 cut(s)	466
Eco47I	GGWCC	2 cut(s)	307, 596
EcoRII	CCWGG	1 cut(s)	672
FaeI	CATG	1 cut(s)	659
FatI	CATG	1 cut(s)	655
FauI	CCCGC	1 cut(s)	92
Fnu4HI	GCNGC	7 cut(s)	31, 34, 456, 540, 609, 612, 653
FokI	GGATG	1 cut(s)	281
Fsp4HI	GCNGC	7 cut(s)	31, 34, 456, 540, 609, 612, 653
GlaI	GCGC	2 cut(s)	37, 285
GluI	GCNGC	7 cut(s)	31, 34, 456, 540, 609, 612, 653
GsaI	CCCAGC	2 cut(s)	432, 631
HaeIII	GGCC	2 cut(s)	393, 567
HhaI	GCGC	2 cut(s)	38, 286
Hin1II	CATG	1 cut(s)	659
Hin6I	GCGC	2 cut(s)	36, 284
HinP1I	GCGC	2 cut(s)	36, 284
HinfI	GANTC	1 cut(s)	131
HphI	GGTGA	2 cut(s)	341, 412
Hpy166II	GTNNAC	2 cut(s)	115, 435
Hpy188I	TCNGA	2 cut(s)	79, 593
Hpy188III	TCNNGA	2 cut(s)	380, 407
Hpy8I	GTNNAC	2 cut(s)	115, 435
Hpy99I	CGWCG	1 cut(s)	223
HpyCH4III	ACNGT	2 cut(s)	262, 605
HpyCH4IV	ACGT	1 cut(s)	218
HpyCH4V	TGCA	4 cut(s)	511, 542, 652, 664
HpyF10VI	GCNNNNNNNGC	4 cut(s)	103, 221, 245, 661
HpySE526I	ACGT	1 cut(s)	218
Hsp92II	CATG	1 cut(s)	659
HspAI	GCGC	2 cut(s)	36, 284
KspI	CCGCGG	1 cut(s)	306
Kzo9I	GATC	3 cut(s)	74, 79, 204
LmnI	GCTCC	3 cut(s)	43, 92, 167
Lsp1109I	GCAGC	7 cut(s)	17, 20, 442, 526, 595, 598, 664
LweI	GCATC	2 cut(s)	248, 259
MaeII	ACGT	1 cut(s)	218
MalI	GATC	3 cut(s)	76, 81, 206
MbiI	CCGCTC	1 cut(s)	87
MboI	GATC	3 cut(s)	74, 79, 204
MboII	GAAGA	2 cut(s)	234, 344
MfeI	CAATTG	2 cut(s)	8, 516
MflI	RGATCY	1 cut(s)	204
MhlI	GDGCHC	2 cut(s)	582, 628
MlsI	TGGCCA	1 cut(s)	567
MluCI	AATT	5 cut(s)	8, 147, 516, 532, 550
MluNI	TGGCCA	1 cut(s)	567
MnlI	CCTC	8 cut(s)	52, 195, 222, 258, 286, 328, 418, 587
Mox20I	TGGCCA	1 cut(s)	567
MscI	TGGCCA	1 cut(s)	567
MseI	TTAA	2 cut(s)	152, 498
Msp20I	TGGCCA	1 cut(s)	567
MspA1I	CMGCKG	1 cut(s)	305
MspR9I	CCNGG	1 cut(s)	674
MunI	CAATTG	2 cut(s)	8, 516
Mva1269I	GAATGC	1 cut(s)	631
MvaI	CCWGG	1 cut(s)	674
MvnI	CGCG	1 cut(s)	305
MwoI	GCNNNNNNNGC	4 cut(s)	103, 221, 245, 661
NdeII	GATC	3 cut(s)	74, 79, 204
NlaIII	CATG	1 cut(s)	659
NlaIV	GGNNCC	2 cut(s)	309, 625
PasI	CCCWGGG	1 cut(s)	673
PctI	GAATGC	1 cut(s)	631
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	7 cut(s)	32, 35, 457, 541, 610, 613, 654
Psp6I	CCWGG	1 cut(s)	672
PspFI	CCCAGC	2 cut(s)	428, 627
PspGI	CCWGG	1 cut(s)	672
PspN4I	GGNNCC	2 cut(s)	309, 625
PspPI	GGNCC	3 cut(s)	307, 392, 596
PsuI	RGATCY	1 cut(s)	204
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SacII	CCGCGG	1 cut(s)	306
SaqAI	TTAA	2 cut(s)	152, 498
SatI	GCNGC	7 cut(s)	31, 34, 456, 540, 609, 612, 653
Sau3AI	GATC	3 cut(s)	74, 79, 204
Sau96I	GGNCC	3 cut(s)	307, 392, 596
ScrFI	CCNGG	1 cut(s)	674
SduI	GDGCHC	2 cut(s)	582, 628
SetI	ASST	8 cut(s)	172, 187, 221, 339, 355, 478, 497, 670
SfaNI	GCATC	2 cut(s)	248, 259
Sfr303I	CCGCGG	1 cut(s)	306
SgrBI	CCGCGG	1 cut(s)	306
SinI	GGWCC	2 cut(s)	307, 596
SmlI	CTYRAG	1 cut(s)	636
SmoI	CTYRAG	1 cut(s)	636
Sse9I	AATT	5 cut(s)	8, 147, 516, 532, 550
SsiI	CCGC	4 cut(s)	85, 95, 303, 305
StyD4I	CCNGG	1 cut(s)	672
TaaI	ACNGT	2 cut(s)	262, 605
TaiI	ACGT	1 cut(s)	221
TaqI	TCGA	2 cut(s)	73, 288
TasI	AATT	5 cut(s)	8, 147, 516, 532, 550
TatI	WGTACW	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	2 cut(s)	152, 498
Tru9I	TTAA	2 cut(s)	152, 498
TscAI	CASTG	2 cut(s)	117, 267
TseI	GCWGC	7 cut(s)	30, 33, 455, 539, 608, 611, 652
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	117, 267
VpaK11BI	GGWCC	2 cut(s)	307, 596
XapI	RAATTY	1 cut(s)	147
XcmI	CCANNNNNNNNNTGG	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.