Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014844.1

Orthogroup ID

OG0002158

Physical Location & Seq

Genomic Coordinates Reverse (-)

35037 .. 40950

Gene Structure 5914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014844.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

atgcagaagacgaagctgtcaaagacagcagaggcgacggcggaggcaaacgcactgtgctttgatgtccttaacctcttcactctcgaccgccgccaccacctccgcacaaagctccaaaacaaaccacctccagtccccaaagtcaccctagacttccccttcacattattagaattccttcactctctctctctcccctccaccgccatagcttctgcttctcccaccaagaaggttctggttccgattgcgaatggcatggagctgatggaggcggcgatcgccgtcgatgttctgcgccgagccagagctgatgtcactatgacttctgtggagaagcagctgagggttgaggcttgtcatggggttgagatcatcgctgatgctttggtttcgcactatggccagagcttcttcgatctcattactttaccttatgaacctcgtgagaggccaaatgccaagtctcttgtgactgccactacgtcaataatggcatcagacgacagttttggactgtcgtctgatgaggttgggcgctatatgcatgagaagatagccgttagcgcggtgaggaggagcgatggggaggtgagcctagggtgggagttcgagatcggaaatttggacaagatcggagtgcgtcgaggcctggtccctgggatttcagttatgtatcaaggggagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0006081 GO:0006082 GO:0006089 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009438 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019172 GO:0019249 GO:0019752 GO:0030054 GO:0031090 GO:0032787 GO:0042180 GO:0042182 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046185 GO:0046394 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051596 GO:0055044 GO:0061727 GO:0065007 GO:0071704 GO:0071944 GO:0072330 GO:0080134 GO:0080135 GO:0098588 GO:0098805 GO:1900407 GO:1900409 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902882 GO:1902884

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

230

Amino Acids

25.27

Weight (kDa)

6.32

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002158)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g10710
rosa_chinensis	RchiOBHm_Chr1g0352931 RchiOBHm_Chr1g0379931 RchiOBHm_Chr2g0127521 RchiOBHm_Chr5g0077921 RchiOBHm_Chr6g0254011 RchiOBHm_Chr7g0224991
rosa_laevigata	RLG00000010747 RLG00000036727
rosa_multiflora	Rmu_co8264081.1_g000001 Rmu_co8475729.1_g000001 Rmu_sc0000512.1_g000010 Rmu_sc0002563.1_g000056 Rmu_sc0003651.1_g000010 Rmu_sc0008382.1_g000016 Rmu_sc0011010.1_g000011 Rmu_sc0014844.1_g000012 Rmu_sc0017063.1_g000001 Rmu_sc0019512.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012710 Rroxscaffold_7G00161280
rosa_rugosa	Rorug01G0236000 Rorug02G0221700
rosa_samantha	Rh1BG320400 Rh1CG044300 Rh1CG334400 Rh1DG351000 Rh2AG096900 Rh2AG182700 Rh2BG335100 Rh2CG313300 Rh2CG351300 Rh2DG352700 Rh2DG390400 Rh3BG073400 Rh4CG209000 Rh5AG316800 Rh5AG511900 Rh6BG273400 Rh6BG434200 Rh6DG468100
rosa_wichuraiana	Rw2G026410 Rw4G021840 Rw6G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	16
AccII	CGCG	1 cut(s)	572
AciI	CCGC	7 cut(s)	41, 91, 94, 106, 207, 278, 572
AcoI	YGGCCR	1 cut(s)	406
AcsI	RAATTY	2 cut(s)	176, 625
AfiI	CCNNNNNNNGG	1 cut(s)	607
AjnI	CCWGG	2 cut(s)	654, 661
AluBI	AGCT	7 cut(s)	16, 115, 215, 268, 314, 346, 414
AluI	AGCT	7 cut(s)	16, 115, 215, 268, 314, 346, 414
Alw26I	GTCTC	1 cut(s)	474
AoxI	GGCC	3 cut(s)	406, 455, 652
ApeKI	GCWGC	1 cut(s)	343
ApoI	RAATTY	2 cut(s)	176, 625
ArsI	GACNNNNNNTTYG	4 cut(s)	452, 484, 497, 529
AsiSI	GCGATCGC	1 cut(s)	285
Asp700I	GAANNNNTTC	1 cut(s)	180
AspA2I	CCTAGG	1 cut(s)	601
AspLEI	GCGC	3 cut(s)	303, 543, 572
AspS9I	GGNCC	1 cut(s)	658
AsuHPI	GGTGA	3 cut(s)	139, 586, 607
AvaII	GGWCC	1 cut(s)	658
AvrII	CCTAGG	1 cut(s)	601
BalI	TGGCCA	1 cut(s)	408
BauI	CACGAG	1 cut(s)	447
BbsI	GAAGAC	1 cut(s)	14
BbvCI	CCTCAGC	1 cut(s)	347
BbvI	GCAGC	1 cut(s)	355
BccI	CCATC	2 cut(s)	265, 581
BceAI	ACGGC	3 cut(s)	54, 272, 548
BciT130I	CCWGG	2 cut(s)	656, 663
BcoDI	GTCTC	1 cut(s)	474
BfaI	CTAG	2 cut(s)	152, 602
BfoI	RGCGCY	1 cut(s)	544
BisI	GCNGC	3 cut(s)	94, 279, 344
BlnI	CCTAGG	1 cut(s)	601
BlsI	GCNGC	3 cut(s)	95, 280, 345
Bme1390I	CCNGG	2 cut(s)	656, 663
Bme18I	GGWCC	1 cut(s)	658
BmgT120I	GGNCC	1 cut(s)	658
BmiI	GGNNCC	2 cut(s)	246, 660
BmrFI	CCNGG	2 cut(s)	656, 663
BmsI	GCATC	2 cut(s)	376, 509
BoxI	GACNNNNGTC	1 cut(s)	523
BpiI	GAAGAC	1 cut(s)	14
BpmI	CTGGAG	1 cut(s)	117
Bpu10I	CCTNAGC	1 cut(s)	347
BsaJI	CCNNGG	3 cut(s)	601, 661, 662
Bsc4I	CCNNNNNNNGG	1 cut(s)	607
Bse1I	ACTGG	1 cut(s)	134
BseBI	CCWGG	2 cut(s)	656, 663
BseDI	CCNNGG	3 cut(s)	601, 661, 662
BseLI	CCNNNNNNNGG	1 cut(s)	607
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	1 cut(s)	134
BseRI	GAGGAG	2 cut(s)	592, 595
BseXI	GCAGC	1 cut(s)	355
Bsh1236I	CGCG	1 cut(s)	572
Bsh1285I	CGRYCG	2 cut(s)	91, 285
BshFI	GGCC	3 cut(s)	408, 457, 654
BsiEI	CGRYCG	2 cut(s)	91, 285
BslFI	GGGAC	2 cut(s)	122, 644
BslI	CCNNNNNNNGG	1 cut(s)	607
BsmAI	GTCTC	1 cut(s)	474
BsmFI	GGGAC	2 cut(s)	122, 644
BsnI	GGCC	3 cut(s)	408, 457, 654
Bsp143I	GATC	5 cut(s)	282, 375, 421, 618, 636
BspACI	CCGC	7 cut(s)	41, 91, 94, 106, 207, 278, 572
BspANI	GGCC	3 cut(s)	408, 457, 654
BspCNI	CTCAG	1 cut(s)	339
BspFNI	CGCG	1 cut(s)	572
BspLI	GGNNCC	2 cut(s)	246, 660
BsrI	ACTGG	1 cut(s)	134
BssECI	CCNNGG	3 cut(s)	601, 661, 662
BssMI	GATC	5 cut(s)	282, 375, 421, 618, 636
BssSI	CACGAG	1 cut(s)	447
BssT1I	CCWWGG	1 cut(s)	601
Bst2BI	CACGAG	1 cut(s)	447
Bst2UI	CCWGG	2 cut(s)	656, 663
Bst4CI	ACNGT	3 cut(s)	57, 512, 522
Bst6I	CTCTTC	1 cut(s)	83
BstDEI	CTNAG	1 cut(s)	347
BstFNI	CGCG	1 cut(s)	572
BstH2I	RGCGCY	1 cut(s)	544
BstHHI	GCGC	3 cut(s)	303, 543, 572
BstKTI	GATC	5 cut(s)	285, 378, 424, 621, 639
BstMAI	GTCTC	1 cut(s)	474
BstMBI	GATC	5 cut(s)	282, 375, 421, 618, 636
BstMCI	CGRYCG	2 cut(s)	91, 285
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 547, 569
BstNI	CCWGG	2 cut(s)	656, 663
BstPAI	GACNNNNGTC	1 cut(s)	523
BstSCI	CCNGG	2 cut(s)	654, 661
BstUI	CGCG	1 cut(s)	572
BstV1I	GCAGC	1 cut(s)	355
BstV2I	GAAGAC	1 cut(s)	14
BsuRI	GGCC	3 cut(s)	408, 457, 654
BtgZI	GCGATG	2 cut(s)	364, 600
BtsIMutI	CAGTG	1 cut(s)	53
CfoI	GCGC	3 cut(s)	303, 543, 572
Cfr13I	GGNCC	1 cut(s)	658
CseI	GACGC	1 cut(s)	635
CviAII	CATG	3 cut(s)	262, 365, 551
DdeI	CTNAG	1 cut(s)	347
DpnI	GATC	5 cut(s)	284, 377, 423, 620, 638
DpnII	GATC	5 cut(s)	282, 375, 421, 618, 636
DrdI	GACNNNNNNGTC	1 cut(s)	16
DseDI	GACNNNNNNGTC	1 cut(s)	16
EaeI	YGGCCR	1 cut(s)	406
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
EciI	GGCGGA	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	601
Eco147I	AGGCCT	1 cut(s)	654
Eco47I	GGWCC	1 cut(s)	658
EcoRI	GAATTC	1 cut(s)	176
EcoRII	CCWGG	2 cut(s)	654, 661
EcoT14I	CCWWGG	1 cut(s)	601
EcoT22I	ATGCAT	1 cut(s)	552
ErhI	CCWWGG	1 cut(s)	601
FaeI	CATG	3 cut(s)	265, 368, 554
FaqI	GGGAC	2 cut(s)	122, 644
FatI	CATG	3 cut(s)	261, 364, 550
Fnu4HI	GCNGC	3 cut(s)	94, 279, 344
Fsp4HI	GCNGC	3 cut(s)	94, 279, 344
FspBI	CTAG	2 cut(s)	152, 602
GlaI	GCGC	3 cut(s)	302, 542, 571
GluI	GCNGC	3 cut(s)	94, 279, 344
GsuI	CTGGAG	1 cut(s)	117
HaeII	RGCGCY	1 cut(s)	544
HaeIII	GGCC	3 cut(s)	408, 457, 654
HgaI	GACGC	1 cut(s)	635
HhaI	GCGC	3 cut(s)	303, 543, 572
Hin1II	CATG	3 cut(s)	265, 368, 554
Hin6I	GCGC	3 cut(s)	301, 541, 570
HinP1I	GCGC	3 cut(s)	301, 541, 570
HphI	GGTGA	3 cut(s)	139, 586, 607
Hpy188I	TCNGA	5 cut(s)	249, 505, 529, 623, 641
Hpy188III	TCNNGA	3 cut(s)	86, 449, 616
Hpy99I	CGWCG	3 cut(s)	40, 293, 651
HpyAV	CCTTC	3 cut(s)	172, 191, 229
HpyCH4III	ACNGT	3 cut(s)	57, 512, 522
HpyCH4IV	ACGT	1 cut(s)	488
HpyCH4V	TGCA	2 cut(s)	4, 550
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 547, 569
HpyF3I	CTNAG	1 cut(s)	347
HpySE526I	ACGT	1 cut(s)	488
Hsp92II	CATG	3 cut(s)	265, 368, 554
HspAI	GCGC	3 cut(s)	301, 541, 570
Kzo9I	GATC	5 cut(s)	282, 375, 421, 618, 636
LmnI	GCTCC	3 cut(s)	120, 265, 582
LpnPI	CCDG	8 cut(s)	147, 227, 322, 422, 641, 648, 668, 675
Lsp1109I	GCAGC	1 cut(s)	355
LweI	GCATC	2 cut(s)	376, 509
MaeI	CTAG	2 cut(s)	152, 602
MaeII	ACGT	1 cut(s)	488
MaeIII	GTNAC	3 cut(s)	145, 319, 475
MalI	GATC	5 cut(s)	284, 377, 423, 620, 638
MboI	GATC	5 cut(s)	282, 375, 421, 618, 636
MboII	GAAGA	4 cut(s)	19, 70, 409, 568
MlsI	TGGCCA	1 cut(s)	408
MluCI	AATT	2 cut(s)	176, 625
MluNI	TGGCCA	1 cut(s)	408
Mox20I	TGGCCA	1 cut(s)	408
Mph1103I	ATGCAT	1 cut(s)	552
MroXI	GAANNNNTTC	1 cut(s)	180
MscI	TGGCCA	1 cut(s)	408
MseI	TTAA	1 cut(s)	72
Msp20I	TGGCCA	1 cut(s)	408
MspA1I	CMGCKG	1 cut(s)	346
MspR9I	CCNGG	2 cut(s)	656, 663
MvaI	CCWGG	2 cut(s)	656, 663
MvnI	CGCG	1 cut(s)	572
MwoI	GCNNNNNNNGC	3 cut(s)	284, 547, 569
NdeII	GATC	5 cut(s)	282, 375, 421, 618, 636
NlaIII	CATG	3 cut(s)	265, 368, 554
NlaIV	GGNNCC	2 cut(s)	246, 660
NmeAIII	GCCGAG	1 cut(s)	329
NmuCI	GTSAC	3 cut(s)	145, 319, 475
NsiI	ATGCAT	1 cut(s)	552
PasI	CCCWGGG	1 cut(s)	662
PceI	AGGCCT	1 cut(s)	654
PdmI	GAANNNNTTC	1 cut(s)	180
PkrI	GCNGC	3 cut(s)	95, 280, 345
Ple19I	CGATCG	1 cut(s)	285
PshAI	GACNNNNGTC	1 cut(s)	523
Psp6I	CCWGG	2 cut(s)	654, 661
PspGI	CCWGG	2 cut(s)	654, 661
PspN4I	GGNNCC	2 cut(s)	246, 660
PspPI	GGNCC	1 cut(s)	658
PvuI	CGATCG	1 cut(s)	285
PvuII	CAGCTG	1 cut(s)	346
RgaI	GCGATCGC	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	3 cut(s)	94, 279, 344
Sau3AI	GATC	5 cut(s)	282, 375, 421, 618, 636
Sau96I	GGNCC	1 cut(s)	658
ScrFI	CCNGG	2 cut(s)	656, 663
SfaAI	GCGATCGC	1 cut(s)	285
SfaNI	GCATC	2 cut(s)	376, 509
SgfI	GCGATCGC	1 cut(s)	285
SinI	GGWCC	1 cut(s)	658
Sse9I	AATT	2 cut(s)	176, 625
SseBI	AGGCCT	1 cut(s)	654
SsiI	CCGC	7 cut(s)	41, 91, 94, 106, 207, 278, 572
SspMI	CTAG	2 cut(s)	152, 602
StuI	AGGCCT	1 cut(s)	654
StyD4I	CCNGG	2 cut(s)	654, 661
StyI	CCWWGG	1 cut(s)	601
TaaI	ACNGT	3 cut(s)	57, 512, 522
TaiI	ACGT	1 cut(s)	491
TaqI	TCGA	5 cut(s)	87, 291, 420, 615, 649
TasI	AATT	2 cut(s)	176, 625
TauI	GCSGC	2 cut(s)	96, 281
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	1 cut(s)	60
TseFI	GTSAC	3 cut(s)	145, 319, 475
TseI	GCWGC	1 cut(s)	343
Tsp45I	GTSAC	3 cut(s)	145, 319, 475
TspDTI	ATGAA	1 cut(s)	456
TspRI	CASTG	1 cut(s)	60
VpaK11BI	GGWCC	1 cut(s)	658
XapI	RAATTY	2 cut(s)	176, 625
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238
XmaJI	CCTAGG	1 cut(s)	601
XmnI	GAANNNNTTC	1 cut(s)	180
XspI	CTAG	2 cut(s)	152, 602
Zsp2I	ATGCAT	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.