The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom16g10710 |
| rosa_chinensis | RchiOBHm_Chr1g0352931 RchiOBHm_Chr1g0379931 RchiOBHm_Chr2g0127521 RchiOBHm_Chr5g0077921 RchiOBHm_Chr6g0254011 RchiOBHm_Chr7g0224991 |
| rosa_laevigata | RLG00000010747 RLG00000036727 |
| rosa_multiflora | Rmu_co8264081.1_g000001 Rmu_co8475729.1_g000001 Rmu_sc0000512.1_g000010 Rmu_sc0002563.1_g000056 Rmu_sc0003651.1_g000010 Rmu_sc0008382.1_g000016 Rmu_sc0011010.1_g000011 Rmu_sc0014844.1_g000012 Rmu_sc0017063.1_g000001 Rmu_sc0019512.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00012710 Rroxscaffold_7G00161280 |
| rosa_rugosa | Rorug01G0236000 Rorug02G0221700 |
| rosa_samantha | Rh1BG320400 Rh1CG044300 Rh1CG334400 Rh1DG351000 Rh2AG096900 Rh2AG182700 Rh2BG335100 Rh2CG313300 Rh2CG351300 Rh2DG352700 Rh2DG390400 Rh3BG073400 Rh4CG209000 Rh5AG316800 Rh5AG511900 Rh6BG273400 Rh6BG434200 Rh6DG468100 |
| rosa_wichuraiana | Rw2G026410 Rw4G021840 Rw6G023490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 15 |
| AfeI | AGCGCT | 1 cut(s) | 63 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 26, 58 |
| Alw26I | GTCTC | 1 cut(s) | 175 |
| Aor51HI | AGCGCT | 1 cut(s) | 63 |
| AoxI | GGCC | 1 cut(s) | 30 |
| ApeKI | GCWGC | 1 cut(s) | 59 |
| AspLEI | GCGC | 1 cut(s) | 64 |
| AsuHPI | GGTGA | 2 cut(s) | 112, 179 |
| BbsI | GAAGAC | 1 cut(s) | 13 |
| BbvI | GCAGC | 1 cut(s) | 71 |
| BccI | CCATC | 1 cut(s) | 157 |
| BcoDI | GTCTC | 1 cut(s) | 175 |
| BfoI | RGCGCY | 1 cut(s) | 65 |
| BisI | GCNGC | 1 cut(s) | 60 |
| BlsI | GCNGC | 1 cut(s) | 61 |
| BmsI | GCATC | 1 cut(s) | 97 |
| BpiI | GAAGAC | 1 cut(s) | 13 |
| BseGI | GGATG | 1 cut(s) | 112 |
| BseXI | GCAGC | 1 cut(s) | 71 |
| BshFI | GGCC | 1 cut(s) | 32 |
| BsmAI | GTCTC | 1 cut(s) | 175 |
| BsnI | GGCC | 1 cut(s) | 32 |
| Bsp143I | GATC | 1 cut(s) | 145 |
| BspANI | GGCC | 1 cut(s) | 32 |
| BspHI | TCATGA | 1 cut(s) | 90 |
| BssMI | GATC | 1 cut(s) | 145 |
| Bst4CI | ACNGT | 1 cut(s) | 100 |
| Bst6I | CTCTTC | 2 cut(s) | 92, 165 |
| BstF5I | GGATG | 1 cut(s) | 112 |
| BstH2I | RGCGCY | 1 cut(s) | 65 |
| BstHHI | GCGC | 1 cut(s) | 64 |
| BstKTI | GATC | 1 cut(s) | 148 |
| BstMAI | GTCTC | 1 cut(s) | 175 |
| BstMBI | GATC | 1 cut(s) | 145 |
| BstV1I | GCAGC | 1 cut(s) | 71 |
| BstV2I | GAAGAC | 1 cut(s) | 13 |
| BsuRI | GGCC | 1 cut(s) | 32 |
| BtsCI | GGATG | 1 cut(s) | 112 |
| CciI | TCATGA | 1 cut(s) | 90 |
| CfoI | GCGC | 1 cut(s) | 64 |
| CviAII | CATG | 2 cut(s) | 91, 185 |
| CviJI | RGCY | 1 cut(s) | 32 |
| CviKI_1 | RGCY | 1 cut(s) | 32 |
| DpnI | GATC | 1 cut(s) | 147 |
| DpnII | GATC | 1 cut(s) | 145 |
| DraI | TTTAAA | 1 cut(s) | 114 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 15 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 15 |
| Eam1104I | CTCTTC | 2 cut(s) | 92, 165 |
| EarI | CTCTTC | 2 cut(s) | 92, 165 |
| Eco47III | AGCGCT | 1 cut(s) | 63 |
| FaeI | CATG | 2 cut(s) | 94, 188 |
| FaiI | YATR | 3 cut(s) | 92, 141, 186 |
| FatI | CATG | 2 cut(s) | 90, 184 |
| Fnu4HI | GCNGC | 1 cut(s) | 60 |
| FokI | GGATG | 1 cut(s) | 119 |
| Fsp4HI | GCNGC | 1 cut(s) | 60 |
| GlaI | GCGC | 1 cut(s) | 63 |
| GluI | GCNGC | 1 cut(s) | 60 |
| HaeII | RGCGCY | 1 cut(s) | 65 |
| HaeIII | GGCC | 1 cut(s) | 32 |
| HhaI | GCGC | 1 cut(s) | 64 |
| Hin1II | CATG | 2 cut(s) | 94, 188 |
| Hin6I | GCGC | 1 cut(s) | 62 |
| HinP1I | GCGC | 1 cut(s) | 62 |
| HincII | GTYRAC | 1 cut(s) | 52 |
| HindII | GTYRAC | 1 cut(s) | 52 |
| HphI | GGTGA | 2 cut(s) | 112, 179 |
| Hpy166II | GTNNAC | 1 cut(s) | 52 |
| Hpy188I | TCNGA | 2 cut(s) | 21, 150 |
| Hpy188III | TCNNGA | 1 cut(s) | 91 |
| Hpy8I | GTNNAC | 1 cut(s) | 52 |
| HpyAV | CCTTC | 1 cut(s) | 6 |
| HpyCH4III | ACNGT | 1 cut(s) | 100 |
| HpyCH4IV | ACGT | 1 cut(s) | 48 |
| HpySE526I | ACGT | 1 cut(s) | 48 |
| Hsp92II | CATG | 2 cut(s) | 94, 188 |
| HspAI | GCGC | 1 cut(s) | 62 |
| Kzo9I | GATC | 1 cut(s) | 145 |
| Lsp1109I | GCAGC | 1 cut(s) | 71 |
| LweI | GCATC | 1 cut(s) | 97 |
| MaeII | ACGT | 1 cut(s) | 48 |
| MalI | GATC | 1 cut(s) | 147 |
| MboI | GATC | 1 cut(s) | 145 |
| MboII | GAAGA | 3 cut(s) | 18, 79, 182 |
| MnlI | CCTC | 5 cut(s) | 22, 95, 96, 124, 166 |
| MseI | TTAA | 2 cut(s) | 81, 113 |
| NdeII | GATC | 1 cut(s) | 145 |
| NlaIII | CATG | 2 cut(s) | 94, 188 |
| PagI | TCATGA | 1 cut(s) | 90 |
| PkrI | GCNGC | 1 cut(s) | 61 |
| SaqAI | TTAA | 2 cut(s) | 81, 113 |
| SatI | GCNGC | 1 cut(s) | 60 |
| Sau3AI | GATC | 1 cut(s) | 145 |
| SetI | ASST | 4 cut(s) | 17, 51, 87, 177 |
| SfaNI | GCATC | 1 cut(s) | 97 |
| SgeI | CNNG | 5 cut(s) | 33, 52, 67, 103, 130 |
| TaaI | ACNGT | 1 cut(s) | 100 |
| TaiI | ACGT | 1 cut(s) | 51 |
| TaqI | TCGA | 2 cut(s) | 72, 126 |
| Tru1I | TTAA | 2 cut(s) | 81, 113 |
| Tru9I | TTAA | 2 cut(s) | 81, 113 |
| TseI | GCWGC | 1 cut(s) | 59 |
| TspDTI | ATGAA | 1 cut(s) | 79 |