Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002158

Physical Location & Seq

Genomic Coordinates Forward (+)

83783310 .. 83784175

Gene Structure 866 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036727

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCTGCCACTCTCCTACGCCTGGCAAGGCTGGCCGCTGCACGCTTGTGTTGGGTGCACCATGGGGGCTACATGTCTGCTCTAGGCTGCTGCCTGGGTGACCAAAGTCCTTCTTTGGGTGTCCAGAAGTCTATGGACTCCGACTCGCCGACTCAGTGGTGGTTCACCGTTCACTCCCTCACCGCATCTCTCTTTTTCCTGCAACCTCTGTTCTATCCGAGATCTCTCTCCGTTCTGGTTCCGATTGCTAATGGCATAGAGCGGATGGAGGTGGTGATCGCCGTCGATGTTCCACACCGAGCCGGAGCTGATGTCACTGTGGCTTCTGTGGAGAAGCAGCTGAGGGTTAAGTCTTGTCATGGGGTTAAGATCATTGCTGATGCTTTGGTTTCAGACTGTGGCCAGAGCTCCTTCGATCTCATTACTCTACCTGTGAGTACTCAATCCCTCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0006081 GO:0006082 GO:0006089 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009438 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019172 GO:0019249 GO:0019752 GO:0030054 GO:0031090 GO:0032787 GO:0042180 GO:0042182 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046185 GO:0046394 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051596 GO:0055044 GO:0061727 GO:0065007 GO:0071704 GO:0071944 GO:0072330 GO:0080134 GO:0080135 GO:0098588 GO:0098805 GO:1900407 GO:1900409 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902882 GO:1902884

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

152

Amino Acids

16.24

Weight (kDa)

6.94

Isoelectric Point (pI)

56.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DJ-1_PfpI	PF01965	77 - 144	2.3e-11	DJ-1/PfpI family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002158)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g10710
rosa_chinensis	RchiOBHm_Chr1g0352931 RchiOBHm_Chr1g0379931 RchiOBHm_Chr2g0127521 RchiOBHm_Chr5g0077921 RchiOBHm_Chr6g0254011 RchiOBHm_Chr7g0224991
rosa_laevigata	RLG00000010747 RLG00000036727
rosa_multiflora	Rmu_co8264081.1_g000001 Rmu_co8475729.1_g000001 Rmu_sc0000512.1_g000010 Rmu_sc0002563.1_g000056 Rmu_sc0003651.1_g000010 Rmu_sc0008382.1_g000016 Rmu_sc0011010.1_g000011 Rmu_sc0014844.1_g000012 Rmu_sc0017063.1_g000001 Rmu_sc0019512.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012710 Rroxscaffold_7G00161280
rosa_rugosa	Rorug01G0236000 Rorug02G0221700
rosa_samantha	Rh1BG320400 Rh1CG044300 Rh1CG334400 Rh1DG351000 Rh2AG096900 Rh2AG182700 Rh2BG335100 Rh2CG313300 Rh2CG351300 Rh2DG352700 Rh2DG390400 Rh3BG073400 Rh4CG209000 Rh5AG316800 Rh5AG511900 Rh6BG273400 Rh6BG434200 Rh6DG468100
rosa_wichuraiana	Rw2G026410 Rw4G021840 Rw6G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	262
AciI	CCGC	3 cut(s)	36, 183, 262
AcoI	YGGCCR	2 cut(s)	33, 400
AfaI	GTAC	1 cut(s)	439
AfiI	CCNNNNNNNGG	2 cut(s)	22, 116
AflIII	ACRYGT	1 cut(s)	72
AjnI	CCWGG	2 cut(s)	21, 93
AleI	CACNNNNGTG	1 cut(s)	46
AluBI	AGCT	3 cut(s)	308, 340, 408
AluI	AGCT	3 cut(s)	308, 340, 408
Alw21I	GWGCWC	2 cut(s)	60, 410
Alw44I	GTGCAC	1 cut(s)	56
AoxI	GGCC	2 cut(s)	33, 400
ApaLI	GTGCAC	1 cut(s)	56
ApeKI	GCWGC	5 cut(s)	5, 38, 87, 90, 337
AsuHPI	GGTGA	4 cut(s)	110, 157, 172, 286
BaeGI	GKGCMC	1 cut(s)	60
BalI	TGGCCA	1 cut(s)	402
BanII	GRGCYC	1 cut(s)	410
Bbv12I	GWGCWC	2 cut(s)	60, 410
BbvCI	CCTCAGC	1 cut(s)	341
BbvI	GCAGC	4 cut(s)	25, 74, 77, 349
BccI	CCATC	1 cut(s)	259
BceAI	ACGGC	1 cut(s)	266
BciT130I	CCWGG	2 cut(s)	23, 95
BfaI	CTAG	1 cut(s)	83
BglII	AGATCT	1 cut(s)	221
BisI	GCNGC	6 cut(s)	6, 36, 39, 88, 91, 338
BlsI	GCNGC	6 cut(s)	7, 37, 40, 89, 92, 339
BmcAI	AGTACT	1 cut(s)	439
Bme1390I	CCNGG	2 cut(s)	23, 95
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	2 cut(s)	23, 95
BmsI	GCATC	2 cut(s)	194, 370
BoxI	GACNNNNGTC	1 cut(s)	105
Bpu10I	CCTNAGC	1 cut(s)	341
BsaJI	CCNNGG	2 cut(s)	61, 94
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 116
Bse3DI	GCAATG	1 cut(s)	372
BseBI	CCWGG	2 cut(s)	23, 95
BseDI	CCNNGG	2 cut(s)	61, 94
BseGI	GGATG	1 cut(s)	270
BseLI	CCNNNNNNNGG	2 cut(s)	22, 116
BseMI	GCAATG	1 cut(s)	372
BseMII	CTCAG	2 cut(s)	167, 332
BseSI	GKGCMC	1 cut(s)	60
BseXI	GCAGC	4 cut(s)	25, 74, 77, 349
BsgI	GTGCAG	1 cut(s)	24
BshFI	GGCC	2 cut(s)	35, 402
BsiHKAI	GWGCWC	2 cut(s)	60, 410
BsiSI	CCGG	1 cut(s)	303
BslI	CCNNNNNNNGG	2 cut(s)	22, 116
BsnI	GGCC	2 cut(s)	35, 402
Bsp1286I	GDGCHC	2 cut(s)	60, 410
Bsp143I	GATC	4 cut(s)	221, 276, 369, 415
Bsp19I	CCATGG	1 cut(s)	61
BspACI	CCGC	3 cut(s)	36, 183, 262
BspANI	GGCC	2 cut(s)	35, 402
BspCNI	CTCAG	2 cut(s)	166, 333
BspLI	GGNNCC	1 cut(s)	240
BsrBI	CCGCTC	1 cut(s)	262
BsrDI	GCAATG	1 cut(s)	372
BssECI	CCNNGG	2 cut(s)	61, 94
BssMI	GATC	4 cut(s)	221, 276, 369, 415
BssT1I	CCWWGG	1 cut(s)	61
Bst2UI	CCWGG	2 cut(s)	23, 95
Bst4CI	ACNGT	3 cut(s)	169, 319, 398
BstC8I	GCNNGC	2 cut(s)	33, 43
BstDEI	CTNAG	2 cut(s)	153, 341
BstDSI	CCRYGG	1 cut(s)	61
BstEII	GGTNACC	1 cut(s)	98
BstF5I	GGATG	1 cut(s)	270
BstKTI	GATC	4 cut(s)	224, 279, 372, 418
BstMBI	GATC	4 cut(s)	221, 276, 369, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNI	CCWGG	2 cut(s)	23, 95
BstNSI	RCATGY	1 cut(s)	76
BstPAI	GACNNNNGTC	1 cut(s)	105
BstPI	GGTNACC	1 cut(s)	98
BstSCI	CCNGG	2 cut(s)	21, 93
BstSLI	GKGCMC	1 cut(s)	60
BstV1I	GCAGC	4 cut(s)	25, 74, 77, 349
BstX2I	RGATCY	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	221
BsuRI	GGCC	2 cut(s)	35, 402
BtgI	CCRYGG	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	270
BtsIMutI	CAGTG	2 cut(s)	161, 315
Cac8I	GCNNGC	2 cut(s)	33, 43
Csp6I	GTAC	1 cut(s)	438
CviAII	CATG	3 cut(s)	62, 73, 359
CviQI	GTAC	1 cut(s)	438
DdeI	CTNAG	2 cut(s)	153, 341
DpnI	GATC	4 cut(s)	223, 278, 371, 417
DpnII	GATC	4 cut(s)	221, 276, 369, 415
EaeI	YGGCCR	2 cut(s)	33, 400
Ecl136II	GAGCTC	1 cut(s)	408
Eco130I	CCWWGG	1 cut(s)	61
Eco24I	GRGCYC	1 cut(s)	410
Eco53kI	GAGCTC	1 cut(s)	408
Eco91I	GGTNACC	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	408
EcoO65I	GGTNACC	1 cut(s)	98
EcoRII	CCWGG	2 cut(s)	21, 93
EcoT14I	CCWWGG	1 cut(s)	61
EcoT38I	GRGCYC	1 cut(s)	410
ErhI	CCWWGG	1 cut(s)	61
FaeI	CATG	3 cut(s)	65, 76, 362
FaiI	YATR	5 cut(s)	63, 74, 134, 257, 360
FalI	AAGNNNNNCTT	2 cut(s)	97, 129
FatI	CATG	3 cut(s)	61, 72, 358
Fnu4HI	GCNGC	6 cut(s)	6, 36, 39, 88, 91, 338
FokI	GGATG	1 cut(s)	277
FriOI	GRGCYC	1 cut(s)	410
Fsp4HI	GCNGC	6 cut(s)	6, 36, 39, 88, 91, 338
FspBI	CTAG	1 cut(s)	83
GluI	GCNGC	6 cut(s)	6, 36, 39, 88, 91, 338
HaeIII	GGCC	2 cut(s)	35, 402
HapII	CCGG	1 cut(s)	303
Hin1II	CATG	3 cut(s)	65, 76, 362
HinfI	GANTC	3 cut(s)	137, 143, 151
HpaII	CCGG	1 cut(s)	303
HphI	GGTGA	4 cut(s)	110, 157, 172, 286
Hpy166II	GTNNAC	3 cut(s)	58, 165, 172
Hpy188I	TCNGA	4 cut(s)	142, 219, 243, 394
Hpy188III	TCNNGA	2 cut(s)	124, 453
Hpy8I	GTNNAC	3 cut(s)	58, 165, 172
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	2 cut(s)	120, 421
HpyCH4III	ACNGT	3 cut(s)	169, 319, 398
HpyCH4V	TGCA	3 cut(s)	41, 58, 202
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	2 cut(s)	153, 341
Hsp92II	CATG	3 cut(s)	65, 76, 362
Kzo9I	GATC	4 cut(s)	221, 276, 369, 415
LmnI	GCTCC	2 cut(s)	305, 413
Lsp1109I	GCAGC	4 cut(s)	25, 74, 77, 349
LweI	GCATC	2 cut(s)	194, 370
MaeI	CTAG	1 cut(s)	83
MaeIII	GTNAC	2 cut(s)	98, 313
MalI	GATC	4 cut(s)	223, 278, 371, 417
MbiI	CCGCTC	1 cut(s)	262
MboI	GATC	4 cut(s)	221, 276, 369, 415
MflI	RGATCY	1 cut(s)	221
MhlI	GDGCHC	2 cut(s)	60, 410
MlsI	TGGCCA	1 cut(s)	402
MluNI	TGGCCA	1 cut(s)	402
MlyI	GAGTC	3 cut(s)	131, 137, 145
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	4 cut(s)	188, 216, 262, 336
Mox20I	TGGCCA	1 cut(s)	402
MscI	TGGCCA	1 cut(s)	402
MseI	TTAA	2 cut(s)	348, 366
MslI	CAYNNNNRTG	1 cut(s)	46
Msp20I	TGGCCA	1 cut(s)	402
MspA1I	CMGCKG	2 cut(s)	38, 340
MspI	CCGG	1 cut(s)	303
MspR9I	CCNGG	2 cut(s)	23, 95
MvaI	CCWGG	2 cut(s)	23, 95
MwoI	GCNNNNNNNGC	1 cut(s)	32
NcoI	CCATGG	1 cut(s)	61
NdeII	GATC	4 cut(s)	221, 276, 369, 415
NlaIII	CATG	3 cut(s)	65, 76, 362
NlaIV	GGNNCC	1 cut(s)	240
NmuCI	GTSAC	2 cut(s)	98, 313
NspI	RCATGY	1 cut(s)	76
OliI	CACNNNNGTG	1 cut(s)	46
PciI	ACATGT	1 cut(s)	72
PkrI	GCNGC	6 cut(s)	7, 37, 40, 89, 92, 339
PleI	GAGTC	3 cut(s)	131, 137, 145
PpsI	GAGTC	3 cut(s)	131, 137, 145
PscI	ACATGT	1 cut(s)	72
PshAI	GACNNNNGTC	1 cut(s)	105
Psp124BI	GAGCTC	1 cut(s)	410
Psp6I	CCWGG	2 cut(s)	21, 93
PspEI	GGTNACC	1 cut(s)	98
PspGI	CCWGG	2 cut(s)	21, 93
PspN4I	GGNNCC	1 cut(s)	240
PsuI	RGATCY	1 cut(s)	221
PvuII	CAGCTG	1 cut(s)	340
RsaI	GTAC	1 cut(s)	439
RsaNI	GTAC	1 cut(s)	438
RseI	CAYNNNNRTG	1 cut(s)	46
SacI	GAGCTC	1 cut(s)	410
SaqAI	TTAA	2 cut(s)	348, 366
SatI	GCNGC	6 cut(s)	6, 36, 39, 88, 91, 338
Sau3AI	GATC	4 cut(s)	221, 276, 369, 415
ScaI	AGTACT	1 cut(s)	439
SchI	GAGTC	3 cut(s)	131, 137, 145
ScrFI	CCNGG	2 cut(s)	23, 95
SduI	GDGCHC	2 cut(s)	60, 410
SetI	ASST	6 cut(s)	208, 273, 310, 342, 410, 433
SfaNI	GCATC	2 cut(s)	194, 370
SmiMI	CAYNNNNRTG	1 cut(s)	46
SsiI	CCGC	3 cut(s)	36, 183, 262
SspMI	CTAG	1 cut(s)	83
SstI	GAGCTC	1 cut(s)	410
StyD4I	CCNGG	2 cut(s)	21, 93
StyI	CCWWGG	1 cut(s)	61
TaaI	ACNGT	3 cut(s)	169, 319, 398
TaqI	TCGA	2 cut(s)	285, 414
TatI	WGTACW	1 cut(s)	437
TauI	GCSGC	1 cut(s)	38
Tru1I	TTAA	2 cut(s)	348, 366
Tru9I	TTAA	2 cut(s)	348, 366
TscAI	CASTG	2 cut(s)	161, 322
TseFI	GTSAC	2 cut(s)	98, 313
TseI	GCWGC	5 cut(s)	5, 38, 87, 90, 337
Tsp45I	GTSAC	2 cut(s)	98, 313
TspGWI	ACGGA	1 cut(s)	220
TspRI	CASTG	2 cut(s)	161, 322
VneI	GTGCAC	1 cut(s)	56
XceI	RCATGY	1 cut(s)	76
XspI	CTAG	1 cut(s)	83
ZrmI	AGTACT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.