Rw4G021840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0002158
Physical Location & Seq
Reverse (-)
46616919 .. 46617266
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G021840.1

Sequence Viewer

Length: 348 bp
ATGGAAGACATGGAGTGCCCTAGATCCACTTTCTCTCTCCTCCTCACCTTCAAACTATGGTCAATTGAAAAGATGCAGAAGACGAAGGTGTCCGAGACGGTAGAGGTGAACGTACTGTGTTGCGCCGACGAGGCGGCCCTGTGCTTTGATGTCCTTAACCTCTTCACTCTCCAAGCGCCTCTACCACCTCCGCACAAAGCTCCAAAACAAACCACCTCCAGTCCCCAAAGACACCTAGACTTTTCCCTCACAGGTATTTCAAGCTCTTTCACTTTTGTAACTTTTGGTTTTTGTGCTTTCATATGCTATTTTGCTTCGTCTTTCTTTGACTTTCTTGATCAATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

13.0

Weight (kDa)

4.94

Isoelectric Point (pI)

58.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 88
AciI CCGC 2 cut(s) 134, 191
AclWI GGATC 1 cut(s) 18
AfaI GTAC 1 cut(s) 114
AgsI TTSAA 3 cut(s) 52, 68, 261
AluBI AGCT 2 cut(s) 200, 264
AluI AGCT 2 cut(s) 200, 264
Alw26I GTCTC 1 cut(s) 89
AlwI GGATC 1 cut(s) 18
AoxI GGCC 1 cut(s) 135
AspLEI GCGC 2 cut(s) 125, 178
AspS9I GGNCC 1 cut(s) 136
AsuHPI GGTGA 2 cut(s) 37, 118
BaeGI GKGCMC 1 cut(s) 20
BbsI GAAGAC 2 cut(s) 12, 86
BclI TGATCA 1 cut(s) 337
BcoDI GTCTC 1 cut(s) 89
BfaI CTAG 2 cut(s) 21, 236
BfoI RGCGCY 1 cut(s) 179
BglI GCCNNNNNGGC 1 cut(s) 131
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 136
BmsI GCATC 1 cut(s) 63
BpiI GAAGAC 2 cut(s) 12, 86
BpmI CTGGAG 1 cut(s) 202
Bse1I ACTGG 1 cut(s) 219
BseNI ACTGG 1 cut(s) 219
BseRI GAGGAG 2 cut(s) 29, 32
BseSI GKGCMC 1 cut(s) 20
BshFI GGCC 1 cut(s) 137
BslFI GGGAC 1 cut(s) 207
BsmAI GTCTC 1 cut(s) 89
BsmBI CGTCTC 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 207
BsnI GGCC 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 20
Bsp143I GATC 2 cut(s) 23, 337
BspACI CCGC 2 cut(s) 134, 191
BspANI GGCC 1 cut(s) 137
BspPI GGATC 1 cut(s) 18
BsrI ACTGG 1 cut(s) 219
BssMI GATC 2 cut(s) 23, 337
Bst4CI ACNGT 2 cut(s) 100, 117
Bst6I CTCTTC 1 cut(s) 167
BstH2I RGCGCY 1 cut(s) 179
BstHHI GCGC 2 cut(s) 125, 178
BstKTI GATC 2 cut(s) 26, 340
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 2 cut(s) 23, 337
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstSLI GKGCMC 1 cut(s) 20
BstV2I GAAGAC 2 cut(s) 12, 86
BstX2I RGATCY 1 cut(s) 23
BstYI RGATCY 1 cut(s) 23
BsuRI GGCC 1 cut(s) 137
CfoI GCGC 2 cut(s) 125, 178
Cfr13I GGNCC 1 cut(s) 136
Csp6I GTAC 1 cut(s) 113
CviAII CATG 1 cut(s) 10
CviJI RGCY 3 cut(s) 137, 200, 264
CviKI_1 RGCY 3 cut(s) 137, 200, 264
CviQI GTAC 1 cut(s) 113
DpnI GATC 2 cut(s) 25, 339
DpnII GATC 2 cut(s) 23, 337
DrdI GACNNNNNNGTC 1 cut(s) 88
DseDI GACNNNNNNGTC 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
Esp3I CGTCTC 1 cut(s) 89
FaeI CATG 1 cut(s) 13
FaiI YATR 5 cut(s) 11, 58, 302, 304, 346
FaqI GGGAC 1 cut(s) 207
FatI CATG 1 cut(s) 9
FauNDI CATATG 1 cut(s) 302
FbaI TGATCA 1 cut(s) 337
Fnu4HI GCNGC 1 cut(s) 135
Fsp4HI GCNGC 1 cut(s) 135
FspBI CTAG 2 cut(s) 21, 236
GlaI GCGC 2 cut(s) 124, 177
GluI GCNGC 1 cut(s) 135
GsuI CTGGAG 1 cut(s) 202
HaeII RGCGCY 1 cut(s) 179
HaeIII GGCC 1 cut(s) 137
HhaI GCGC 2 cut(s) 125, 178
Hin1II CATG 1 cut(s) 13
Hin6I GCGC 2 cut(s) 123, 176
HinP1I GCGC 2 cut(s) 123, 176
HphI GGTGA 2 cut(s) 37, 118
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 1 cut(s) 335
Hpy8I GTNNAC 1 cut(s) 109
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 2 cut(s) 58, 79
HpyCH4III ACNGT 2 cut(s) 100, 117
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpySE526I ACGT 1 cut(s) 111
Hsp92II CATG 1 cut(s) 13
HspAI GCGC 2 cut(s) 123, 176
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 2 cut(s) 23, 337
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 3 cut(s) 152, 232, 237
LweI GCATC 1 cut(s) 63
MaeI CTAG 2 cut(s) 21, 236
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 277
MalI GATC 2 cut(s) 25, 339
MboI GATC 2 cut(s) 23, 337
MboII GAAGA 3 cut(s) 17, 91, 154
MfeI CAATTG 1 cut(s) 63
MflI RGATCY 1 cut(s) 23
MhlI GDGCHC 1 cut(s) 20
MluCI AATT 2 cut(s) 63, 341
MnlI CCTC 9 cut(s) 50, 53, 97, 124, 170, 189, 198, 226, 257
MseI TTAA 1 cut(s) 156
MunI CAATTG 1 cut(s) 63
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeI CATATG 1 cut(s) 302
NdeII GATC 2 cut(s) 23, 337
NlaIII CATG 1 cut(s) 13
PkrI GCNGC 1 cut(s) 136
PspPI GGNCC 1 cut(s) 136
PsuI RGATCY 1 cut(s) 23
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 2 cut(s) 23, 337
Sau96I GGNCC 1 cut(s) 136
SduI GDGCHC 1 cut(s) 20
SfaNI GCATC 1 cut(s) 63
Sse9I AATT 2 cut(s) 63, 341
SsiI CCGC 2 cut(s) 134, 191
SspMI CTAG 2 cut(s) 21, 236
TaaI ACNGT 2 cut(s) 100, 117
TaiI ACGT 1 cut(s) 114
TasI AATT 2 cut(s) 63, 341
TauI GCSGC 1 cut(s) 137
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TspDTI ATGAA 1 cut(s) 289
XspI CTAG 2 cut(s) 21, 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.