Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002158

Physical Location & Seq

Genomic Coordinates Forward (+)

4042531 .. 4044921

Gene Structure 2391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00161280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGCATTGCTTGGAGCACCTGAGTTTGGCTGACTGTTCGCAACCAGAGATCACCGATGTTGGAGGTGTCGCAATCTCGGCCATTTTAACCCTAAAAATATTGAGCTTGTGCAGGCTGGGCGAAGTGTCAGACCGCACCATTGTTGCTCTAGCTCAGAATTGCCCCAACTTGGAGATGGTTGATTTAAGTGACTGTGGAATAACTGGAGCTGGTATTCGTGCATTTTCAGGTCACGCTTGCTTACAAACTATTGTATTGCGCTTATGTGAAGTTGGCGTATCTGATTTGGAACACTTGGTGCTTAGCTGCCGGTCATTGAAGTCTATTCTGGTGCACCATAAAACGCTAAAGCAGATATTGCCTCTGATGCGAAAGCGGACTAGAAGATTTGTGAAAAGTGGGTTACTGGAGAATATAGTGGAGGTTTCAGATTTAGCTTGGATTACCGACATTGGAGGTGTGGCGCTCTCGGCTATTTCAACCCTCAAGAACTTGAGCTTGGAAGAGCTGTCCAGAATCTCGGACCGCACCATTGTTGCTCTTGCTAAGAATTGCCCCGACTTGGAGGTCCTCGACTTAACTCGATGTGGAATAACTCCAGCTGGTTTGTGGCGCCCTACCCTCCAGGATACAACAACCGTTAATCCTTGTAAGCGTACACTCGCAAACTTAGATCCTAGAAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

229

Amino Acids

24.85

Weight (kDa)

6.98

Isoelectric Point (pI)

37.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002158)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g10710
rosa_chinensis	RchiOBHm_Chr1g0352931 RchiOBHm_Chr1g0379931 RchiOBHm_Chr2g0127521 RchiOBHm_Chr5g0077921 RchiOBHm_Chr6g0254011 RchiOBHm_Chr7g0224991
rosa_laevigata	RLG00000010747 RLG00000036727
rosa_multiflora	Rmu_co8264081.1_g000001 Rmu_co8475729.1_g000001 Rmu_sc0000512.1_g000010 Rmu_sc0002563.1_g000056 Rmu_sc0003651.1_g000010 Rmu_sc0008382.1_g000016 Rmu_sc0011010.1_g000011 Rmu_sc0014844.1_g000012 Rmu_sc0017063.1_g000001 Rmu_sc0019512.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012710 Rroxscaffold_7G00161280
rosa_rugosa	Rorug01G0236000 Rorug02G0221700
rosa_samantha	Rh1BG320400 Rh1CG044300 Rh1CG334400 Rh1DG351000 Rh2AG096900 Rh2AG182700 Rh2BG335100 Rh2CG313300 Rh2CG351300 Rh2DG352700 Rh2DG390400 Rh3BG073400 Rh4CG209000 Rh5AG316800 Rh5AG511900 Rh6BG273400 Rh6BG434200 Rh6DG468100
rosa_wichuraiana	Rw2G026410 Rw4G021840 Rw6G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	566
AccB1I	GGYRCC	1 cut(s)	612
AciI	CCGC	3 cut(s)	133, 376, 526
AclWI	GGATC	1 cut(s)	668
AcoI	YGGCCR	1 cut(s)	78
AcyI	GRCGYC	1 cut(s)	613
AdeI	CACNNNGTG	1 cut(s)	298
AfaI	GTAC	1 cut(s)	658
AfiI	CCNNNNNNNGG	3 cut(s)	25, 169, 562
AgsI	TTSAA	2 cut(s)	319, 480
AjnI	CCWGG	1 cut(s)	624
AjuI	GAANNNNNNNTTGG	2 cut(s)	482, 514
AluBI	AGCT	8 cut(s)	105, 152, 209, 306, 437, 498, 508, 602
AluI	AGCT	8 cut(s)	105, 152, 209, 306, 437, 498, 508, 602
Alw21I	GWGCWC	2 cut(s)	18, 336
Alw44I	GTGCAC	1 cut(s)	332
AlwI	GGATC	1 cut(s)	668
AoxI	GGCC	1 cut(s)	78
ApaLI	GTGCAC	1 cut(s)	332
ApeKI	GCWGC	1 cut(s)	306
AspLEI	GCGC	3 cut(s)	261, 466, 615
AspS9I	GGNCC	2 cut(s)	523, 568
AsuHPI	GGTGA	1 cut(s)	43
AvaII	GGWCC	2 cut(s)	523, 568
BaeGI	GKGCMC	1 cut(s)	336
BanI	GGYRCC	1 cut(s)	612
Bbv12I	GWGCWC	2 cut(s)	18, 336
BbvI	GCAGC	1 cut(s)	293
BccI	CCATC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	626
BciVI	GTATCC	1 cut(s)	622
BfaI	CTAG	3 cut(s)	149, 381, 678
BfoI	RGCGCY	2 cut(s)	467, 616
BfuI	GTATCC	1 cut(s)	622
BisI	GCNGC	1 cut(s)	307
BlpI	GCTNAGC	1 cut(s)	302
BlsI	GCNGC	1 cut(s)	308
Bme1390I	CCNGG	1 cut(s)	626
Bme18I	GGWCC	2 cut(s)	523, 568
BmgT120I	GGNCC	2 cut(s)	523, 568
BmiI	GGNNCC	1 cut(s)	614
BmrFI	CCNGG	1 cut(s)	626
BmsI	GCATC	1 cut(s)	357
BpmI	CTGGAG	4 cut(s)	225, 428, 582, 608
Bpu1102I	GCTNAGC	1 cut(s)	302
BpuEI	CTTGAG	2 cut(s)	470, 514
BsaHI	GRCGYC	1 cut(s)	613
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 169, 562
Bse118I	RCCGGY	1 cut(s)	309
Bse1I	ACTGG	2 cut(s)	208, 411
Bse3DI	GCAATG	1 cut(s)	4
BseBI	CCWGG	1 cut(s)	626
BseLI	CCNNNNNNNGG	3 cut(s)	25, 169, 562
BseMI	GCAATG	1 cut(s)	4
BseMII	CTCAG	2 cut(s)	11, 167
BseNI	ACTGG	2 cut(s)	208, 411
BseSI	GKGCMC	1 cut(s)	336
BseXI	GCAGC	1 cut(s)	293
BseYI	CCCAGC	1 cut(s)	115
BsgI	GTGCAG	1 cut(s)	130
BshFI	GGCC	1 cut(s)	80
BshNI	GGYRCC	1 cut(s)	612
BsiHKAI	GWGCWC	2 cut(s)	18, 336
BsiSI	CCGG	1 cut(s)	310
BslI	CCNNNNNNNGG	3 cut(s)	25, 169, 562
BsnI	GGCC	1 cut(s)	80
Bsp1286I	GDGCHC	2 cut(s)	18, 336
Bsp143I	GATC	2 cut(s)	48, 673
Bsp1720I	GCTNAGC	1 cut(s)	302
BspACI	CCGC	3 cut(s)	133, 376, 526
BspANI	GGCC	1 cut(s)	80
BspCNI	CTCAG	2 cut(s)	12, 166
BspLI	GGNNCC	1 cut(s)	614
BspPI	GGATC	1 cut(s)	668
BspQI	GCTCTTC	1 cut(s)	498
BspT107I	GGYRCC	1 cut(s)	612
BsrDI	GCAATG	1 cut(s)	4
BsrFI	RCCGGY	1 cut(s)	309
BsrI	ACTGG	2 cut(s)	208, 411
BssAI	RCCGGY	1 cut(s)	309
BssMI	GATC	2 cut(s)	48, 673
BssNI	GRCGYC	1 cut(s)	613
Bst2UI	CCWGG	1 cut(s)	626
Bst4CI	ACNGT	3 cut(s)	35, 194, 640
Bst6I	CTCTTC	1 cut(s)	498
BstACI	GRCGYC	1 cut(s)	613
BstAPI	GCANNNNNTGC	1 cut(s)	358
BstC8I	GCNNGC	2 cut(s)	113, 238
BstDEI	CTNAG	5 cut(s)	20, 153, 302, 546, 670
BstH2I	RGCGCY	2 cut(s)	467, 616
BstHHI	GCGC	3 cut(s)	261, 466, 615
BstKTI	GATC	2 cut(s)	51, 676
BstMBI	GATC	2 cut(s)	48, 673
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 117, 358, 367, 470
BstNI	CCWGG	1 cut(s)	626
BstSCI	CCNGG	1 cut(s)	624
BstSLI	GKGCMC	1 cut(s)	336
BstV1I	GCAGC	1 cut(s)	293
BstX2I	RGATCY	1 cut(s)	673
BstYI	RGATCY	1 cut(s)	673
BsuI	GTATCC	1 cut(s)	622
BsuRI	GGCC	1 cut(s)	80
Cac8I	GCNNGC	2 cut(s)	113, 238
CfoI	GCGC	3 cut(s)	261, 466, 615
Cfr10I	RCCGGY	1 cut(s)	309
Cfr13I	GGNCC	2 cut(s)	523, 568
CpoI	CGGWCCG	1 cut(s)	523
Csp6I	GTAC	1 cut(s)	657
CspI	CGGWCCG	1 cut(s)	523
CviQI	GTAC	1 cut(s)	657
DdeI	CTNAG	5 cut(s)	20, 153, 302, 546, 670
DinI	GGCGCC	1 cut(s)	614
DpnI	GATC	2 cut(s)	50, 675
DpnII	GATC	2 cut(s)	48, 673
DraIII	CACNNNGTG	1 cut(s)	298
DrdI	GACNNNNNNGTC	1 cut(s)	566
DseDI	GACNNNNNNGTC	1 cut(s)	566
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
Eco47I	GGWCC	2 cut(s)	523, 568
EcoO109I	RGGNCCY	1 cut(s)	568
EcoRII	CCWGG	1 cut(s)	624
EcoT22I	ATGCAT	1 cut(s)	6
EgeI	GGCGCC	1 cut(s)	614
EheI	GGCGCC	1 cut(s)	614
FaiI	YATR	3 cut(s)	265, 339, 416
Fnu4HI	GCNGC	1 cut(s)	307
Fsp4HI	GCNGC	1 cut(s)	307
FspBI	CTAG	3 cut(s)	149, 381, 678
GlaI	GCGC	3 cut(s)	260, 465, 614
GluI	GCNGC	1 cut(s)	307
GsaI	CCCAGC	1 cut(s)	119
GsuI	CTGGAG	4 cut(s)	225, 428, 582, 608
HaeII	RGCGCY	2 cut(s)	467, 616
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	1 cut(s)	310
HhaI	GCGC	3 cut(s)	261, 466, 615
Hin1I	GRCGYC	1 cut(s)	613
Hin6I	GCGC	3 cut(s)	259, 464, 613
HinP1I	GCGC	3 cut(s)	259, 464, 613
HinfI	GANTC	1 cut(s)	516
HpaII	CCGG	1 cut(s)	310
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	2 cut(s)	334, 659
Hpy188I	TCNGA	6 cut(s)	130, 156, 283, 366, 430, 523
Hpy188III	TCNNGA	2 cut(s)	487, 513
Hpy8I	GTNNAC	2 cut(s)	334, 659
HpyCH4III	ACNGT	3 cut(s)	35, 194, 640
HpyCH4V	TGCA	4 cut(s)	4, 111, 221, 334
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 117, 358, 367, 470
HpyF3I	CTNAG	5 cut(s)	20, 153, 302, 546, 670
Hsp92I	GRCGYC	1 cut(s)	613
HspAI	GCGC	3 cut(s)	259, 464, 613
KasI	GGCGCC	1 cut(s)	612
Kzo9I	GATC	2 cut(s)	48, 673
LguI	GCTCTTC	1 cut(s)	498
LmnI	GCTCC	2 cut(s)	13, 206
Lsp1109I	GCAGC	1 cut(s)	293
LweI	GCATC	1 cut(s)	357
MaeI	CTAG	3 cut(s)	149, 381, 678
MaeIII	GTNAC	3 cut(s)	188, 230, 402
MalI	GATC	2 cut(s)	50, 675
MboI	GATC	2 cut(s)	48, 673
MboII	GAAGA	2 cut(s)	396, 515
MflI	RGATCY	1 cut(s)	673
MhlI	GDGCHC	2 cut(s)	18, 336
MluCI	AATT	2 cut(s)	157, 550
Mly113I	GGCGCC	1 cut(s)	613
MmeI	TCCRAC	1 cut(s)	40
MnlI	CCTC	8 cut(s)	56, 372, 415, 449, 494, 559, 581, 632
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	4 cut(s)	86, 185, 578, 642
MspA1I	CMGCKG	1 cut(s)	602
MspI	CCGG	1 cut(s)	310
MspR9I	CCNGG	1 cut(s)	626
MvaI	CCWGG	1 cut(s)	626
MwoI	GCNNNNNNNGC	5 cut(s)	77, 117, 358, 367, 470
NarI	GGCGCC	1 cut(s)	613
NdeII	GATC	2 cut(s)	48, 673
NlaIV	GGNNCC	1 cut(s)	614
NmeAIII	GCCGAG	2 cut(s)	56, 449
NmuCI	GTSAC	2 cut(s)	188, 230
NsiI	ATGCAT	1 cut(s)	6
PciSI	GCTCTTC	1 cut(s)	498
PfeI	GAWTC	1 cut(s)	516
PfoI	TCCNGGA	1 cut(s)	624
PkrI	GCNGC	1 cut(s)	308
PluTI	GGCGCC	1 cut(s)	616
PpuMI	RGGWCCY	1 cut(s)	568
Psp5II	RGGWCCY	1 cut(s)	568
Psp6I	CCWGG	1 cut(s)	624
PspFI	CCCAGC	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	624
PspN4I	GGNNCC	1 cut(s)	614
PspPI	GGNCC	2 cut(s)	523, 568
PspPPI	RGGWCCY	1 cut(s)	568
PsuI	RGATCY	1 cut(s)	673
PvuII	CAGCTG	1 cut(s)	602
RsaI	GTAC	1 cut(s)	658
RsaNI	GTAC	1 cut(s)	657
Rsr2I	CGGWCCG	1 cut(s)	523
RsrII	CGGWCCG	1 cut(s)	523
SapI	GCTCTTC	1 cut(s)	498
SaqAI	TTAA	4 cut(s)	86, 185, 578, 642
SatI	GCNGC	1 cut(s)	307
Sau3AI	GATC	2 cut(s)	48, 673
Sau96I	GGNCC	2 cut(s)	523, 568
ScrFI	CCNGG	1 cut(s)	626
SduI	GDGCHC	2 cut(s)	18, 336
SfaNI	GCATC	1 cut(s)	357
SfoI	GGCGCC	1 cut(s)	614
SinI	GGWCC	2 cut(s)	523, 568
SmlI	CTYRAG	2 cut(s)	485, 493
SmoI	CTYRAG	2 cut(s)	485, 493
Sse9I	AATT	2 cut(s)	157, 550
SsiI	CCGC	3 cut(s)	133, 376, 526
SspDI	GGCGCC	1 cut(s)	612
SspI	AATATT	1 cut(s)	99
SspMI	CTAG	3 cut(s)	149, 381, 678
StyD4I	CCNGG	1 cut(s)	624
TaaI	ACNGT	3 cut(s)	35, 194, 640
TaqI	TCGA	2 cut(s)	573, 583
TasI	AATT	2 cut(s)	157, 550
TfiI	GAWTC	1 cut(s)	516
Tru1I	TTAA	4 cut(s)	86, 185, 578, 642
Tru9I	TTAA	4 cut(s)	86, 185, 578, 642
TseFI	GTSAC	2 cut(s)	188, 230
TseI	GCWGC	1 cut(s)	306
Tsp45I	GTSAC	2 cut(s)	188, 230
VneI	GTGCAC	1 cut(s)	332
VpaK11BI	GGWCC	2 cut(s)	523, 568
XcmI	CCANNNNNNNNNTGG	2 cut(s)	172, 606
XspI	CTAG	3 cut(s)	149, 381, 678
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.