Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011010.1

Orthogroup ID

OG0002158

Physical Location & Seq

Genomic Coordinates Reverse (-)

17964 .. 18191

Gene Structure 228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011010.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

atgaatggcatggagctgatggaggcggcgatcgccgtcgatgttctgcgccgagccagagctgatgtcattgtggcttctatggagaagcagctgagggttgaggcttgtcatggggttgagatcatcgttgatgctttggtttcgcactatggccagagcttcttcgatctcattactctacctgtgagtactcagtccctctatatatgtgtcctgaatggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0006081 GO:0006082 GO:0006089 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009438 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019172 GO:0019249 GO:0019752 GO:0030054 GO:0031090 GO:0032787 GO:0042180 GO:0042182 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046185 GO:0046394 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051596 GO:0055044 GO:0061727 GO:0065007 GO:0071704 GO:0071944 GO:0072330 GO:0080134 GO:0080135 GO:0098588 GO:0098805 GO:1900407 GO:1900409 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902882 GO:1902884

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

75

Amino Acids

8.22

Weight (kDa)

4.82

Isoelectric Point (pI)

46.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002158)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g10710
rosa_chinensis	RchiOBHm_Chr1g0352931 RchiOBHm_Chr1g0379931 RchiOBHm_Chr2g0127521 RchiOBHm_Chr5g0077921 RchiOBHm_Chr6g0254011 RchiOBHm_Chr7g0224991
rosa_laevigata	RLG00000010747 RLG00000036727
rosa_multiflora	Rmu_co8264081.1_g000001 Rmu_co8475729.1_g000001 Rmu_sc0000512.1_g000010 Rmu_sc0002563.1_g000056 Rmu_sc0003651.1_g000010 Rmu_sc0008382.1_g000016 Rmu_sc0011010.1_g000011 Rmu_sc0014844.1_g000012 Rmu_sc0017063.1_g000001 Rmu_sc0019512.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012710 Rroxscaffold_7G00161280
rosa_rugosa	Rorug01G0236000 Rorug02G0221700
rosa_samantha	Rh1BG320400 Rh1CG044300 Rh1CG334400 Rh1DG351000 Rh2AG096900 Rh2AG182700 Rh2BG335100 Rh2CG313300 Rh2CG351300 Rh2DG352700 Rh2DG390400 Rh3BG073400 Rh4CG209000 Rh5AG316800 Rh5AG511900 Rh6BG273400 Rh6BG434200 Rh6DG468100
rosa_wichuraiana	Rw2G026410 Rw4G021840 Rw6G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	26
AcoI	YGGCCR	1 cut(s)	154
AfaI	GTAC	1 cut(s)	193
AluBI	AGCT	4 cut(s)	16, 62, 94, 162
AluI	AGCT	4 cut(s)	16, 62, 94, 162
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	1 cut(s)	91
AsiSI	GCGATCGC	1 cut(s)	33
AspLEI	GCGC	1 cut(s)	51
BalI	TGGCCA	1 cut(s)	156
BbvCI	CCTCAGC	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	1 cut(s)	13
BceAI	ACGGC	1 cut(s)	20
BisI	GCNGC	2 cut(s)	27, 92
BlsI	GCNGC	2 cut(s)	28, 93
BmcAI	AGTACT	1 cut(s)	193
BmsI	GCATC	1 cut(s)	124
Bpu10I	CCTNAGC	1 cut(s)	95
BseMII	CTCAG	2 cut(s)	86, 209
BseXI	GCAGC	1 cut(s)	103
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	1 cut(s)	156
BsiEI	CGRYCG	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	184
BsnI	GGCC	1 cut(s)	156
Bsp143I	GATC	3 cut(s)	30, 123, 169
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	1 cut(s)	156
BspCNI	CTCAG	2 cut(s)	87, 208
BssMI	GATC	3 cut(s)	30, 123, 169
BstDEI	CTNAG	2 cut(s)	95, 195
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	3 cut(s)	33, 126, 172
BstMBI	GATC	3 cut(s)	30, 123, 169
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstV1I	GCAGC	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	156
CfoI	GCGC	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	192
CviAII	CATG	2 cut(s)	10, 113
CviJI	RGCY	8 cut(s)	16, 56, 62, 77, 94, 107, 156, 162
CviKI_1	RGCY	8 cut(s)	16, 56, 62, 77, 94, 107, 156, 162
CviQI	GTAC	1 cut(s)	192
DdeI	CTNAG	2 cut(s)	95, 195
DpnI	GATC	3 cut(s)	32, 125, 171
DpnII	GATC	3 cut(s)	30, 123, 169
EaeI	YGGCCR	1 cut(s)	154
FaeI	CATG	2 cut(s)	13, 116
FaiI	YATR	7 cut(s)	11, 83, 114, 153, 207, 209, 211
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	2 cut(s)	9, 112
Fnu4HI	GCNGC	2 cut(s)	27, 92
Fsp4HI	GCNGC	2 cut(s)	27, 92
GlaI	GCGC	1 cut(s)	50
GluI	GCNGC	2 cut(s)	27, 92
HaeIII	GGCC	1 cut(s)	156
HhaI	GCGC	1 cut(s)	51
Hin1II	CATG	2 cut(s)	13, 116
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
Hpy188III	TCNNGA	1 cut(s)	217
Hpy99I	CGWCG	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	2 cut(s)	95, 195
Hsp92II	CATG	2 cut(s)	13, 116
HspAI	GCGC	1 cut(s)	49
Kzo9I	GATC	3 cut(s)	30, 123, 169
LmnI	GCTCC	1 cut(s)	13
LpnPI	CCDG	3 cut(s)	70, 170, 198
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	1 cut(s)	124
MalI	GATC	3 cut(s)	32, 125, 171
MboI	GATC	3 cut(s)	30, 123, 169
MboII	GAAGA	1 cut(s)	157
MlsI	TGGCCA	1 cut(s)	156
MluNI	TGGCCA	1 cut(s)	156
MnlI	CCTC	4 cut(s)	16, 90, 97, 212
Mox20I	TGGCCA	1 cut(s)	156
MscI	TGGCCA	1 cut(s)	156
Msp20I	TGGCCA	1 cut(s)	156
MspA1I	CMGCKG	1 cut(s)	94
MwoI	GCNNNNNNNGC	1 cut(s)	32
NdeII	GATC	3 cut(s)	30, 123, 169
NlaIII	CATG	2 cut(s)	13, 116
NmeAIII	GCCGAG	1 cut(s)	77
PkrI	GCNGC	2 cut(s)	28, 93
Ple19I	CGATCG	1 cut(s)	33
PvuI	CGATCG	1 cut(s)	33
PvuII	CAGCTG	1 cut(s)	94
RgaI	GCGATCGC	1 cut(s)	33
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
SatI	GCNGC	2 cut(s)	27, 92
Sau3AI	GATC	3 cut(s)	30, 123, 169
ScaI	AGTACT	1 cut(s)	193
SetI	ASST	5 cut(s)	18, 64, 96, 164, 187
SfaAI	GCGATCGC	1 cut(s)	33
SfaNI	GCATC	1 cut(s)	124
SgeI	CNNG	7 cut(s)	22, 65, 69, 120, 125, 169, 197
SgfI	GCGATCGC	1 cut(s)	33
SsiI	CCGC	1 cut(s)	26
TaqI	TCGA	2 cut(s)	39, 168
TatI	WGTACW	1 cut(s)	191
TauI	GCSGC	1 cut(s)	29
TseI	GCWGC	1 cut(s)	91
TspDTI	ATGAA	1 cut(s)	17
ZrmI	AGTACT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.