Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000512.1

Orthogroup ID

OG0002158

Physical Location & Seq

Genomic Coordinates Reverse (-)

34400 .. 35400

Gene Structure 1001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000512.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atgaaggagatagagtgccctagatccactttctctctcctcctcgccttcaaactagggtcaattgaagagatgcagaagacgaagctgtccgagacagcagaggcgacggcggaggcgaatgcactgtgctttgatgtccttaacctcttcactctcgaccgccgccgccaccacctccgcacaaagctccaaaacaaaccacctccagtccccaaagtcaccctagacttccccttcacagtattagaattccttcactctctctctctcccctccaccgccatagcttctgcttctcccaccaagaaggttctggttccgattgcgaatggcatggagctgatggaggcggcgatcgccgtcgatgttctgcgccgagccggagctgatgtcaatgtggcttctgtggagaagcagctgagggttaaggcttgtcatggggttgagatgattgctgatgctttggtttcgcactatggccagagcttcttcgatctcattactctacatgtgagtactcagtccctctatatatgtgtcctgaatcgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0006081 GO:0006082 GO:0006089 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009438 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019172 GO:0019249 GO:0019752 GO:0030054 GO:0031090 GO:0032787 GO:0042180 GO:0042182 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046185 GO:0046394 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051596 GO:0055044 GO:0061727 GO:0065007 GO:0071704 GO:0071944 GO:0072330 GO:0080134 GO:0080135 GO:0098588 GO:0098805 GO:1900407 GO:1900409 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902882 GO:1902884

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

184

Amino Acids

20.32

Weight (kDa)

7.73

Isoelectric Point (pI)

56.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002158)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g10710
rosa_chinensis	RchiOBHm_Chr1g0352931 RchiOBHm_Chr1g0379931 RchiOBHm_Chr2g0127521 RchiOBHm_Chr5g0077921 RchiOBHm_Chr6g0254011 RchiOBHm_Chr7g0224991
rosa_laevigata	RLG00000010747 RLG00000036727
rosa_multiflora	Rmu_co8264081.1_g000001 Rmu_co8475729.1_g000001 Rmu_sc0000512.1_g000010 Rmu_sc0002563.1_g000056 Rmu_sc0003651.1_g000010 Rmu_sc0008382.1_g000016 Rmu_sc0011010.1_g000011 Rmu_sc0014844.1_g000012 Rmu_sc0017063.1_g000001 Rmu_sc0019512.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012710 Rroxscaffold_7G00161280
rosa_rugosa	Rorug01G0236000 Rorug02G0221700
rosa_samantha	Rh1BG320400 Rh1CG044300 Rh1CG334400 Rh1DG351000 Rh2AG096900 Rh2AG182700 Rh2BG335100 Rh2CG313300 Rh2CG351300 Rh2DG352700 Rh2DG390400 Rh3BG073400 Rh4CG209000 Rh5AG316800 Rh5AG511900 Rh6BG273400 Rh6BG434200 Rh6DG468100
rosa_wichuraiana	Rw2G026410 Rw4G021840 Rw6G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	88
AciI	CCGC	7 cut(s)	113, 163, 166, 169, 181, 282, 353
AclWI	GGATC	1 cut(s)	18
AcoI	YGGCCR	1 cut(s)	481
AcsI	RAATTY	1 cut(s)	251
AfaI	GTAC	1 cut(s)	520
AflIII	ACRYGT	1 cut(s)	511
AgsI	TTSAA	2 cut(s)	52, 68
AluBI	AGCT	7 cut(s)	88, 190, 290, 343, 389, 421, 489
AluI	AGCT	7 cut(s)	88, 190, 290, 343, 389, 421, 489
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	1 cut(s)	18
AoxI	GGCC	1 cut(s)	481
ApeKI	GCWGC	1 cut(s)	418
ApoI	RAATTY	1 cut(s)	251
AsiSI	GCGATCGC	1 cut(s)	360
Asp700I	GAANNNNTTC	1 cut(s)	255
AspLEI	GCGC	1 cut(s)	378
AsuHPI	GGTGA	1 cut(s)	214
BaeGI	GKGCMC	1 cut(s)	20
BalI	TGGCCA	1 cut(s)	483
BbsI	GAAGAC	1 cut(s)	86
BbvCI	CCTCAGC	1 cut(s)	422
BbvI	GCAGC	1 cut(s)	430
BccI	CCATC	1 cut(s)	340
BceAI	ACGGC	2 cut(s)	126, 347
BcoDI	GTCTC	1 cut(s)	89
BfaI	CTAG	3 cut(s)	21, 56, 227
BisI	GCNGC	4 cut(s)	166, 169, 354, 419
BlsI	GCNGC	4 cut(s)	167, 170, 355, 420
BmcAI	AGTACT	1 cut(s)	520
BmiI	GGNNCC	1 cut(s)	321
BmsI	GCATC	2 cut(s)	63, 451
BpiI	GAAGAC	1 cut(s)	86
BpmI	CTGGAG	1 cut(s)	192
Bpu10I	CCTNAGC	1 cut(s)	422
Bsa29I	ATCGAT	1 cut(s)	550
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 378, 408
Bse1I	ACTGG	1 cut(s)	209
BseCI	ATCGAT	1 cut(s)	550
BseMII	CTCAG	2 cut(s)	413, 536
BseNI	ACTGG	1 cut(s)	209
BseRI	GAGGAG	2 cut(s)	29, 32
BseSI	GKGCMC	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	430
Bsh1285I	CGRYCG	2 cut(s)	163, 360
BshFI	GGCC	1 cut(s)	483
BshVI	ATCGAT	1 cut(s)	550
BsiEI	CGRYCG	2 cut(s)	163, 360
BsiSI	CCGG	1 cut(s)	384
BslFI	GGGAC	2 cut(s)	197, 511
BsmAI	GTCTC	1 cut(s)	89
BsmFI	GGGAC	2 cut(s)	197, 511
BsmI	GAATGC	1 cut(s)	127
BsnI	GGCC	1 cut(s)	483
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	3 cut(s)	23, 357, 496
BspACI	CCGC	7 cut(s)	113, 163, 166, 169, 181, 282, 353
BspANI	GGCC	1 cut(s)	483
BspCNI	CTCAG	2 cut(s)	414, 535
BspDI	ATCGAT	1 cut(s)	550
BspLI	GGNNCC	1 cut(s)	321
BspPI	GGATC	1 cut(s)	18
BsrI	ACTGG	1 cut(s)	209
BssMI	GATC	3 cut(s)	23, 357, 496
Bst4CI	ACNGT	2 cut(s)	129, 244
Bst6I	CTCTTC	2 cut(s)	63, 155
BstDEI	CTNAG	2 cut(s)	422, 522
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	3 cut(s)	26, 360, 499
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	3 cut(s)	23, 357, 496
BstMCI	CGRYCG	2 cut(s)	163, 360
BstMWI	GCNNNNNNNGC	1 cut(s)	359
BstNSI	RCATGY	1 cut(s)	515
BstSLI	GKGCMC	1 cut(s)	20
BstV1I	GCAGC	1 cut(s)	430
BstV2I	GAAGAC	1 cut(s)	86
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
Bsu15I	ATCGAT	1 cut(s)	550
BsuRI	GGCC	1 cut(s)	483
BsuTUI	ATCGAT	1 cut(s)	550
BtsIMutI	CAGTG	1 cut(s)	125
CfoI	GCGC	1 cut(s)	378
ClaI	ATCGAT	1 cut(s)	550
Csp6I	GTAC	1 cut(s)	519
CviAII	CATG	3 cut(s)	337, 440, 512
CviQI	GTAC	1 cut(s)	519
DdeI	CTNAG	2 cut(s)	422, 522
DpnI	GATC	3 cut(s)	25, 359, 498
DpnII	GATC	3 cut(s)	23, 357, 496
DrdI	GACNNNNNNGTC	1 cut(s)	88
DseDI	GACNNNNNNGTC	1 cut(s)	88
EaeI	YGGCCR	1 cut(s)	481
Eam1104I	CTCTTC	2 cut(s)	63, 155
EarI	CTCTTC	2 cut(s)	63, 155
EciI	GGCGGA	1 cut(s)	128
EcoRI	GAATTC	1 cut(s)	251
FaeI	CATG	3 cut(s)	340, 443, 515
FaiI	YATR	8 cut(s)	287, 338, 441, 480, 513, 534, 536, 538
FaqI	GGGAC	2 cut(s)	197, 511
FatI	CATG	3 cut(s)	336, 439, 511
Fnu4HI	GCNGC	4 cut(s)	166, 169, 354, 419
Fsp4HI	GCNGC	4 cut(s)	166, 169, 354, 419
FspBI	CTAG	3 cut(s)	21, 56, 227
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	4 cut(s)	166, 169, 354, 419
GsuI	CTGGAG	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	483
HapII	CCGG	1 cut(s)	384
HhaI	GCGC	1 cut(s)	378
Hin1II	CATG	3 cut(s)	340, 443, 515
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HinfI	GANTC	1 cut(s)	547
HpaII	CCGG	1 cut(s)	384
HphI	GGTGA	1 cut(s)	214
Hpy188I	TCNGA	2 cut(s)	94, 324
Hpy188III	TCNNGA	2 cut(s)	158, 544
Hpy99I	CGWCG	2 cut(s)	112, 368
HpyAV	CCTTC	4 cut(s)	58, 247, 266, 304
HpyCH4III	ACNGT	2 cut(s)	129, 244
HpyCH4V	TGCA	2 cut(s)	76, 125
HpyF10VI	GCNNNNNNNGC	1 cut(s)	359
HpyF3I	CTNAG	2 cut(s)	422, 522
Hsp92II	CATG	3 cut(s)	340, 443, 515
HspAI	GCGC	1 cut(s)	376
Kzo9I	GATC	3 cut(s)	23, 357, 496
LmnI	GCTCC	3 cut(s)	195, 340, 386
LpnPI	CCDG	4 cut(s)	222, 302, 397, 497
Lsp1109I	GCAGC	1 cut(s)	430
LweI	GCATC	2 cut(s)	63, 451
MaeI	CTAG	3 cut(s)	21, 56, 227
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	3 cut(s)	25, 359, 498
MboI	GATC	3 cut(s)	23, 357, 496
MboII	GAAGA	4 cut(s)	80, 91, 142, 484
MfeI	CAATTG	1 cut(s)	63
MflI	RGATCY	1 cut(s)	23
MhlI	GDGCHC	1 cut(s)	20
MlsI	TGGCCA	1 cut(s)	483
MluCI	AATT	2 cut(s)	63, 251
MluNI	TGGCCA	1 cut(s)	483
Mox20I	TGGCCA	1 cut(s)	483
MroXI	GAANNNNTTC	1 cut(s)	255
MscI	TGGCCA	1 cut(s)	483
MseI	TTAA	2 cut(s)	144, 429
Msp20I	TGGCCA	1 cut(s)	483
MspA1I	CMGCKG	1 cut(s)	421
MspI	CCGG	1 cut(s)	384
MunI	CAATTG	1 cut(s)	63
Mva1269I	GAATGC	1 cut(s)	127
MwoI	GCNNNNNNNGC	1 cut(s)	359
NdeII	GATC	3 cut(s)	23, 357, 496
NlaIII	CATG	3 cut(s)	340, 443, 515
NlaIV	GGNNCC	1 cut(s)	321
NmeAIII	GCCGAG	1 cut(s)	404
NmuCI	GTSAC	1 cut(s)	220
NspI	RCATGY	1 cut(s)	515
PciI	ACATGT	1 cut(s)	511
PcsI	WCGNNNNNNNCGW	1 cut(s)	116
PctI	GAATGC	1 cut(s)	127
PdmI	GAANNNNTTC	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	547
PkrI	GCNGC	4 cut(s)	167, 170, 355, 420
Ple19I	CGATCG	1 cut(s)	360
PscI	ACATGT	1 cut(s)	511
PspN4I	GGNNCC	1 cut(s)	321
PsuI	RGATCY	1 cut(s)	23
PvuI	CGATCG	1 cut(s)	360
PvuII	CAGCTG	1 cut(s)	421
RgaI	GCGATCGC	1 cut(s)	360
RsaI	GTAC	1 cut(s)	520
RsaNI	GTAC	1 cut(s)	519
SaqAI	TTAA	2 cut(s)	144, 429
SatI	GCNGC	4 cut(s)	166, 169, 354, 419
Sau3AI	GATC	3 cut(s)	23, 357, 496
ScaI	AGTACT	1 cut(s)	520
SduI	GDGCHC	1 cut(s)	20
SfaAI	GCGATCGC	1 cut(s)	360
SfaNI	GCATC	2 cut(s)	63, 451
SgfI	GCGATCGC	1 cut(s)	360
Sse9I	AATT	2 cut(s)	63, 251
SsiI	CCGC	7 cut(s)	113, 163, 166, 169, 181, 282, 353
SspMI	CTAG	3 cut(s)	21, 56, 227
TaaI	ACNGT	2 cut(s)	129, 244
TaqI	TCGA	4 cut(s)	159, 366, 495, 550
TasI	AATT	2 cut(s)	63, 251
TatI	WGTACW	1 cut(s)	518
TauI	GCSGC	3 cut(s)	168, 171, 356
TfiI	GAWTC	1 cut(s)	547
Tru1I	TTAA	2 cut(s)	144, 429
Tru9I	TTAA	2 cut(s)	144, 429
TscAI	CASTG	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	1 cut(s)	418
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	132
XapI	RAATTY	1 cut(s)	251
XceI	RCATGY	1 cut(s)	515
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
XmnI	GAANNNNTTC	1 cut(s)	255
XspI	CTAG	3 cut(s)	21, 56, 227
ZrmI	AGTACT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.