Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002158

Physical Location & Seq

Genomic Coordinates Reverse (-)

56564606 .. 56569461

Gene Structure 4856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG390400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAGACTTCCGTTCGCGTTTCCATCATCTTATGACTCGAGATGTCCTTATACTAATCTTATTTGTTTTGTTTTCCAATATGATCTGCCACCTATTTTTTATTTTATTTTTAGTAAACACCTGACAGTGACAATGAGGGATGCTCTAAACTCTTCCTTCGATGAGGAAATGTATGTCGATCTGAAAGTGTTTTTGATGGGTCAAGAGATGCCAGAAATGGATGTATTTGAGGCAACAAGGGAGATAAGGAAAGTGGAGAAAACTCACCATGTCCGCATTCCGATCATTGCATTAACAGCTCATACACCAGGCGAGGAAACAAGAAGGATGTTGGAGGCCGGCATGCATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

117

Amino Acids

13.74

Weight (kDa)

5.68

Isoelectric Point (pI)

50.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002158)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g10710
rosa_chinensis	RchiOBHm_Chr1g0352931 RchiOBHm_Chr1g0379931 RchiOBHm_Chr2g0127521 RchiOBHm_Chr5g0077921 RchiOBHm_Chr6g0254011 RchiOBHm_Chr7g0224991
rosa_laevigata	RLG00000010747 RLG00000036727
rosa_multiflora	Rmu_co8264081.1_g000001 Rmu_co8475729.1_g000001 Rmu_sc0000512.1_g000010 Rmu_sc0002563.1_g000056 Rmu_sc0003651.1_g000010 Rmu_sc0008382.1_g000016 Rmu_sc0011010.1_g000011 Rmu_sc0014844.1_g000012 Rmu_sc0017063.1_g000001 Rmu_sc0019512.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012710 Rroxscaffold_7G00161280
rosa_rugosa	Rorug01G0236000 Rorug02G0221700
rosa_samantha	Rh1BG320400 Rh1CG044300 Rh1CG334400 Rh1DG351000 Rh2AG096900 Rh2AG182700 Rh2BG335100 Rh2CG313300 Rh2CG351300 Rh2DG352700 Rh2DG390400 Rh3BG073400 Rh4CG209000 Rh5AG316800 Rh5AG511900 Rh6BG273400 Rh6BG434200 Rh6DG468100
rosa_wichuraiana	Rw2G026410 Rw4G021840 Rw6G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	17
AciI	CCGC	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	307
AluBI	AGCT	1 cut(s)	299
AluI	AGCT	1 cut(s)	299
Ama87I	CYCGRG	1 cut(s)	37
AoxI	GGCC	1 cut(s)	336
AsuHPI	GGTGA	1 cut(s)	257
AvaI	CYCGRG	1 cut(s)	37
BccI	CCATC	2 cut(s)	31, 190
BciT130I	CCWGG	1 cut(s)	309
Bme1390I	CCNGG	1 cut(s)	309
BmeT110I	CYCGRG	1 cut(s)	37
BmrFI	CCNGG	1 cut(s)	309
BmsI	GCATC	2 cut(s)	130, 198
BplI	GAGNNNNNCTC	2 cut(s)	127, 159
Bse118I	RCCGGY	1 cut(s)	338
Bse3DI	GCAATG	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	309
BseGI	GGATG	3 cut(s)	145, 226, 333
BseMI	GCAATG	1 cut(s)	285
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	1 cut(s)	338
BsiHKCI	CYCGRG	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	339
BsmI	GAATGC	1 cut(s)	276
BsnI	GGCC	1 cut(s)	338
BsoBI	CYCGRG	1 cut(s)	37
Bsp143I	GATC	3 cut(s)	82, 178, 282
BspACI	CCGC	1 cut(s)	274
BspANI	GGCC	1 cut(s)	338
BspFNI	CGCG	1 cut(s)	17
BsrDI	GCAATG	1 cut(s)	285
BsrFI	RCCGGY	1 cut(s)	338
BssAI	RCCGGY	1 cut(s)	338
BssMI	GATC	3 cut(s)	82, 178, 282
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	1 cut(s)	157
BstC8I	GCNNGC	2 cut(s)	340, 344
BstF5I	GGATG	3 cut(s)	145, 226, 333
BstFNI	CGCG	1 cut(s)	17
BstKTI	GATC	3 cut(s)	85, 181, 285
BstMBI	GATC	3 cut(s)	82, 178, 282
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstNI	CCWGG	1 cut(s)	309
BstNSI	RCATGY	1 cut(s)	346
BstSCI	CCNGG	1 cut(s)	307
BstUI	CGCG	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	338
BtsCI	GGATG	3 cut(s)	145, 226, 333
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	2 cut(s)	340, 344
Cfr10I	RCCGGY	1 cut(s)	338
CviAII	CATG	3 cut(s)	269, 343, 347
CviJI	RGCY	2 cut(s)	299, 338
CviKI_1	RGCY	2 cut(s)	299, 338
DpnI	GATC	3 cut(s)	84, 180, 284
DpnII	GATC	3 cut(s)	82, 178, 282
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
Eco88I	CYCGRG	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	307
EcoT22I	ATGCAT	1 cut(s)	348
FaeI	CATG	3 cut(s)	272, 346, 350
FaiI	YATR	8 cut(s)	33, 51, 81, 174, 270, 303, 344, 348
FatI	CATG	3 cut(s)	268, 342, 346
FokI	GGATG	3 cut(s)	152, 233, 340
HaeIII	GGCC	1 cut(s)	338
HapII	CCGG	1 cut(s)	339
Hin1II	CATG	3 cut(s)	272, 346, 350
HinfI	GANTC	1 cut(s)	35
HpaII	CCGG	1 cut(s)	339
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	2 cut(s)	183, 282
Hpy188III	TCNNGA	2 cut(s)	39, 203
Hpy8I	GTNNAC	1 cut(s)	116
HpyAV	CCTTC	2 cut(s)	166, 318
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4V	TGCA	2 cut(s)	290, 346
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
Hsp92II	CATG	3 cut(s)	272, 346, 350
KroI	GCCGGC	1 cut(s)	338
KroNI	GCCGGC	1 cut(s)	340
Kzo9I	GATC	3 cut(s)	82, 178, 282
LpnPI	CCDG	4 cut(s)	134, 225, 294, 321
LweI	GCATC	2 cut(s)	130, 198
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	3 cut(s)	84, 180, 284
MboI	GATC	3 cut(s)	82, 178, 282
MboII	GAAGA	1 cut(s)	144
MlyI	GAGTC	1 cut(s)	29
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	5 cut(s)	129, 157, 223, 307, 328
Mph1103I	ATGCAT	1 cut(s)	348
MroNI	GCCGGC	1 cut(s)	338
MseI	TTAA	1 cut(s)	293
MspI	CCGG	1 cut(s)	339
MspR9I	CCNGG	1 cut(s)	309
Mva1269I	GAATGC	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	309
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	296
NaeI	GCCGGC	1 cut(s)	340
NdeII	GATC	3 cut(s)	82, 178, 282
NgoMIV	GCCGGC	1 cut(s)	338
NlaIII	CATG	3 cut(s)	272, 346, 350
NmuCI	GTSAC	1 cut(s)	127
NsiI	ATGCAT	1 cut(s)	348
NspI	RCATGY	1 cut(s)	346
PaeI	GCATGC	1 cut(s)	346
PaeR7I	CTCGAG	1 cut(s)	37
PctI	GAATGC	1 cut(s)	276
PdiI	GCCGGC	1 cut(s)	340
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	307
SaqAI	TTAA	1 cut(s)	293
Sau3AI	GATC	3 cut(s)	82, 178, 282
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	1 cut(s)	309
SetI	ASST	3 cut(s)	94, 123, 301
SfaNI	GCATC	2 cut(s)	130, 198
Sfr274I	CTCGAG	1 cut(s)	37
SlaI	CTCGAG	1 cut(s)	37
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
SphI	GCATGC	1 cut(s)	346
SsiI	CCGC	1 cut(s)	274
StyD4I	CCNGG	1 cut(s)	307
TaaI	ACNGT	1 cut(s)	127
TaqI	TCGA	3 cut(s)	38, 159, 177
Tru1I	TTAA	1 cut(s)	293
Tru9I	TTAA	1 cut(s)	293
TscAI	CASTG	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	127
Tsp45I	GTSAC	1 cut(s)	127
TspRI	CASTG	1 cut(s)	132
XceI	RCATGY	1 cut(s)	346
XhoI	CTCGAG	1 cut(s)	37
Zsp2I	ATGCAT	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.