Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002158

Physical Location & Seq

Genomic Coordinates Forward (+)

44232934 .. 44235787

Gene Structure 2854 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG335100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCTTCTGCTTCTCCCGCCAAGAAGGTTCTGGTTCCGATTGCGAATGGCAAGGAGCCGGTGGACGCGGTGATCGCCGTCGATGTTCTGCGCCGAGCCGGAGCTGATGTCACTGTGGCTTCTGTGGAGAAGCAACTGAGGGTTGAGGCTTGTCATGGGGTTAAGATCATCGCTGATGCTTTGGTTTCGCACTGTGGCCAGAGCTCCTTCGATCTCATTACTCTACCTGGAGGGATGCCAGGTACTACCAATCTTAAGAATAGTGAAAGCTATGAACATATACTCGAGACTCTTTTTCATCTGTGCAATGGTTGTGTGTATATGGTATGTAATCCAGCCATCGCAAATGAGAAGATAACATATTATCTTCTCATCCTGATCCTCATAAAACTCACATTTACAGTAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0006081 GO:0006082 GO:0006089 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009438 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019172 GO:0019249 GO:0019752 GO:0030054 GO:0031090 GO:0032787 GO:0042180 GO:0042182 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046185 GO:0046394 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051596 GO:0055044 GO:0061727 GO:0065007 GO:0071704 GO:0071944 GO:0072330 GO:0080134 GO:0080135 GO:0098588 GO:0098805 GO:1900407 GO:1900409 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902882 GO:1902884

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

136

Amino Acids

14.55

Weight (kDa)

6.39

Isoelectric Point (pI)

45.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DJ-1_PfpI	PF01965	8 - 111	1.6e-18	DJ-1/PfpI family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002158)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g10710
rosa_chinensis	RchiOBHm_Chr1g0352931 RchiOBHm_Chr1g0379931 RchiOBHm_Chr2g0127521 RchiOBHm_Chr5g0077921 RchiOBHm_Chr6g0254011 RchiOBHm_Chr7g0224991
rosa_laevigata	RLG00000010747 RLG00000036727
rosa_multiflora	Rmu_co8264081.1_g000001 Rmu_co8475729.1_g000001 Rmu_sc0000512.1_g000010 Rmu_sc0002563.1_g000056 Rmu_sc0003651.1_g000010 Rmu_sc0008382.1_g000016 Rmu_sc0011010.1_g000011 Rmu_sc0014844.1_g000012 Rmu_sc0017063.1_g000001 Rmu_sc0019512.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012710 Rroxscaffold_7G00161280
rosa_rugosa	Rorug01G0236000 Rorug02G0221700
rosa_samantha	Rh1BG320400 Rh1CG044300 Rh1CG334400 Rh1DG351000 Rh2AG096900 Rh2AG182700 Rh2BG335100 Rh2CG313300 Rh2CG351300 Rh2DG352700 Rh2DG390400 Rh3BG073400 Rh4CG209000 Rh5AG316800 Rh5AG511900 Rh6BG273400 Rh6BG434200 Rh6DG468100
rosa_wichuraiana	Rw2G026410 Rw4G021840 Rw6G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	68
AciI	CCGC	2 cut(s)	18, 68
AclWI	GGATC	1 cut(s)	373
AcoI	YGGCCR	1 cut(s)	196
AfaI	GTAC	1 cut(s)	244
AflII	CTTAAG	1 cut(s)	254
AjnI	CCWGG	2 cut(s)	226, 238
AluBI	AGCT	3 cut(s)	104, 204, 270
AluI	AGCT	3 cut(s)	104, 204, 270
Alw21I	GWGCWC	1 cut(s)	206
Alw26I	GTCTC	1 cut(s)	281
AlwI	GGATC	1 cut(s)	373
Ama87I	CYCGRG	1 cut(s)	284
AoxI	GGCC	1 cut(s)	196
AspLEI	GCGC	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	284
BalI	TGGCCA	1 cut(s)	198
BanII	GRGCYC	1 cut(s)	206
Bbv12I	GWGCWC	1 cut(s)	206
BccI	CCATC	1 cut(s)	347
BceAI	ACGGC	1 cut(s)	62
BciT130I	CCWGG	2 cut(s)	228, 240
BcoDI	GTCTC	1 cut(s)	281
BfrI	CTTAAG	1 cut(s)	254
Bme1390I	CCNGG	2 cut(s)	228, 240
BmeT110I	CYCGRG	1 cut(s)	284
BmiI	GGNNCC	2 cut(s)	36, 57
BmrFI	CCNGG	2 cut(s)	228, 240
BmsI	GCATC	2 cut(s)	166, 225
BpmI	CTGGAG	1 cut(s)	249
BsaXI	ACNNNNNCTCC	2 cut(s)	93, 123
Bse118I	RCCGGY	1 cut(s)	58
Bse3DI	GCAATG	1 cut(s)	313
BseBI	CCWGG	2 cut(s)	228, 240
BseGI	GGATG	2 cut(s)	240, 372
BseMI	GCAATG	1 cut(s)	313
BseMII	CTCAG	1 cut(s)	128
Bsh1236I	CGCG	1 cut(s)	68
BshFI	GGCC	1 cut(s)	198
BsiHKAI	GWGCWC	1 cut(s)	206
BsiHKCI	CYCGRG	1 cut(s)	284
BsiSI	CCGG	2 cut(s)	59, 99
BsmAI	GTCTC	1 cut(s)	281
BsnI	GGCC	1 cut(s)	198
BsoBI	CYCGRG	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	206
Bsp143I	GATC	4 cut(s)	72, 165, 211, 378
BspACI	CCGC	2 cut(s)	18, 68
BspANI	GGCC	1 cut(s)	198
BspCNI	CTCAG	1 cut(s)	129
BspFNI	CGCG	1 cut(s)	68
BspLI	GGNNCC	2 cut(s)	36, 57
BspPI	GGATC	1 cut(s)	373
BspTI	CTTAAG	1 cut(s)	254
BsrDI	GCAATG	1 cut(s)	313
BsrFI	RCCGGY	1 cut(s)	58
BssAI	RCCGGY	1 cut(s)	58
BssMI	GATC	4 cut(s)	72, 165, 211, 378
Bst2UI	CCWGG	2 cut(s)	228, 240
Bst4CI	ACNGT	3 cut(s)	115, 194, 403
BstAFI	CTTAAG	1 cut(s)	254
BstDEI	CTNAG	1 cut(s)	137
BstF5I	GGATG	2 cut(s)	240, 372
BstFNI	CGCG	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	4 cut(s)	75, 168, 214, 381
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	4 cut(s)	72, 165, 211, 378
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 74
BstNI	CCWGG	2 cut(s)	228, 240
BstSCI	CCNGG	2 cut(s)	226, 238
BstUI	CGCG	1 cut(s)	68
BsuRI	GGCC	1 cut(s)	198
BtgZI	GCGATG	2 cut(s)	154, 325
BtsCI	GGATG	2 cut(s)	240, 372
BtsIMutI	CAGTG	2 cut(s)	111, 190
CfoI	GCGC	1 cut(s)	93
Cfr10I	RCCGGY	1 cut(s)	58
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	243
CviAII	CATG	1 cut(s)	155
CviQI	GTAC	1 cut(s)	243
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	4 cut(s)	74, 167, 213, 380
DpnII	GATC	4 cut(s)	72, 165, 211, 378
EaeI	YGGCCR	1 cut(s)	196
Ecl136II	GAGCTC	1 cut(s)	204
Eco24I	GRGCYC	1 cut(s)	206
Eco53kI	GAGCTC	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	284
EcoICRI	GAGCTC	1 cut(s)	204
EcoRII	CCWGG	2 cut(s)	226, 238
EcoT38I	GRGCYC	1 cut(s)	206
FaeI	CATG	1 cut(s)	158
FatI	CATG	1 cut(s)	154
FauI	CCCGC	1 cut(s)	25
FokI	GGATG	2 cut(s)	247, 359
FriOI	GRGCYC	1 cut(s)	206
GlaI	GCGC	1 cut(s)	92
GsuI	CTGGAG	1 cut(s)	249
HaeIII	GGCC	1 cut(s)	198
HapII	CCGG	2 cut(s)	59, 99
HgaI	GACGC	1 cut(s)	74
HhaI	GCGC	1 cut(s)	93
Hin1II	CATG	1 cut(s)	158
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HinfI	GANTC	1 cut(s)	289
HpaII	CCGG	2 cut(s)	59, 99
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	1 cut(s)	39
Hpy188III	TCNNGA	2 cut(s)	286, 376
Hpy8I	GTNNAC	1 cut(s)	64
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	2 cut(s)	19, 217
HpyCH4III	ACNGT	3 cut(s)	115, 194, 403
HpyCH4V	TGCA	1 cut(s)	306
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 74
HpyF3I	CTNAG	1 cut(s)	137
Hsp92II	CATG	1 cut(s)	158
HspAI	GCGC	1 cut(s)	91
Kzo9I	GATC	4 cut(s)	72, 165, 211, 378
LmnI	GCTCC	3 cut(s)	55, 101, 209
LweI	GCATC	2 cut(s)	166, 225
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	4 cut(s)	74, 167, 213, 380
MboI	GATC	4 cut(s)	72, 165, 211, 378
MboII	GAAGA	2 cut(s)	359, 364
MhlI	GDGCHC	1 cut(s)	206
MlsI	TGGCCA	1 cut(s)	198
MluNI	TGGCCA	1 cut(s)	198
MlyI	GAGTC	1 cut(s)	283
MnlI	CCTC	4 cut(s)	132, 139, 224, 392
Mox20I	TGGCCA	1 cut(s)	198
MscI	TGGCCA	1 cut(s)	198
MseI	TTAA	2 cut(s)	162, 255
Msp20I	TGGCCA	1 cut(s)	198
MspCI	CTTAAG	1 cut(s)	254
MspI	CCGG	2 cut(s)	59, 99
MspR9I	CCNGG	2 cut(s)	228, 240
MvaI	CCWGG	2 cut(s)	228, 240
MvnI	CGCG	1 cut(s)	68
MwoI	GCNNNNNNNGC	2 cut(s)	17, 74
NdeII	GATC	4 cut(s)	72, 165, 211, 378
NlaIII	CATG	1 cut(s)	158
NlaIV	GGNNCC	2 cut(s)	36, 57
NmeAIII	GCCGAG	1 cut(s)	119
NmuCI	GTSAC	1 cut(s)	109
PaeR7I	CTCGAG	1 cut(s)	284
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
Psp124BI	GAGCTC	1 cut(s)	206
Psp6I	CCWGG	2 cut(s)	226, 238
PspGI	CCWGG	2 cut(s)	226, 238
PspN4I	GGNNCC	2 cut(s)	36, 57
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
SacI	GAGCTC	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	162, 255
Sau3AI	GATC	4 cut(s)	72, 165, 211, 378
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	2 cut(s)	228, 240
SduI	GDGCHC	1 cut(s)	206
SetI	ASST	6 cut(s)	30, 106, 206, 229, 244, 272
SfaNI	GCATC	2 cut(s)	166, 225
Sfr274I	CTCGAG	1 cut(s)	284
SlaI	CTCGAG	1 cut(s)	284
SmlI	CTYRAG	2 cut(s)	254, 284
SmoI	CTYRAG	2 cut(s)	254, 284
SsiI	CCGC	2 cut(s)	18, 68
SstI	GAGCTC	1 cut(s)	206
StyD4I	CCNGG	2 cut(s)	226, 238
TaaI	ACNGT	3 cut(s)	115, 194, 403
TaqI	TCGA	3 cut(s)	81, 210, 285
Tru1I	TTAA	2 cut(s)	162, 255
Tru9I	TTAA	2 cut(s)	162, 255
TscAI	CASTG	2 cut(s)	118, 197
TseFI	GTSAC	1 cut(s)	109
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	2 cut(s)	287, 288
TspRI	CASTG	2 cut(s)	118, 197
Vha464I	CTTAAG	1 cut(s)	254
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
XhoI	CTCGAG	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.