Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002158

Physical Location & Seq

Genomic Coordinates Reverse (-)

46498779 .. 46505890

Gene Structure 7112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG316800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGTTTCTGCAGCAGAAATTTATAACTACGCTAGTGATGCTGTTCTGGTTCCGATTGCGAATGGCATGGAGCTGATGGAGGCGGCGATCGCTGTCGATGTTCTATGCCGAGCCGGAGCTGATGTCACTGTGGCTTCTGTGGAGAAGCAGCTGAGGGTTGAGGCTTGTCATGGGGTTGTGTTCATCGCTGATGTTTTGGTTTCGAACTATGGCCAGAGCTTCTTCGATCTCATTACTCTACCTGGAAGGGATGCCAGGTGCTACCAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0006081 GO:0006082 GO:0006089 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009438 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019172 GO:0019249 GO:0019752 GO:0030054 GO:0031090 GO:0032787 GO:0042180 GO:0042182 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046185 GO:0046394 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051596 GO:0055044 GO:0061727 GO:0065007 GO:0071704 GO:0071944 GO:0072330 GO:0080134 GO:0080135 GO:0098588 GO:0098805 GO:1900407 GO:1900409 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902882 GO:1902884

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

90

Amino Acids

9.61

Weight (kDa)

4.33

Isoelectric Point (pI)

34.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DJ-1_PfpI	PF01965	15 - 83	3.3e-10	DJ-1/PfpI family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002158)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g10710
rosa_chinensis	RchiOBHm_Chr1g0352931 RchiOBHm_Chr1g0379931 RchiOBHm_Chr2g0127521 RchiOBHm_Chr5g0077921 RchiOBHm_Chr6g0254011 RchiOBHm_Chr7g0224991
rosa_laevigata	RLG00000010747 RLG00000036727
rosa_multiflora	Rmu_co8264081.1_g000001 Rmu_co8475729.1_g000001 Rmu_sc0000512.1_g000010 Rmu_sc0002563.1_g000056 Rmu_sc0003651.1_g000010 Rmu_sc0008382.1_g000016 Rmu_sc0011010.1_g000011 Rmu_sc0014844.1_g000012 Rmu_sc0017063.1_g000001 Rmu_sc0019512.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012710 Rroxscaffold_7G00161280
rosa_rugosa	Rorug01G0236000 Rorug02G0221700
rosa_samantha	Rh1BG320400 Rh1CG044300 Rh1CG334400 Rh1DG351000 Rh2AG096900 Rh2AG182700 Rh2BG335100 Rh2CG313300 Rh2CG351300 Rh2DG352700 Rh2DG390400 Rh3BG073400 Rh4CG209000 Rh5AG316800 Rh5AG511900 Rh6BG273400 Rh6BG434200 Rh6DG468100
rosa_wichuraiana	Rw2G026410 Rw4G021840 Rw6G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	24
AciI	CCGC	1 cut(s)	83
AcoI	YGGCCR	1 cut(s)	211
AcsI	RAATTY	1 cut(s)	18
AjnI	CCWGG	2 cut(s)	241, 254
AluBI	AGCT	4 cut(s)	73, 119, 151, 219
AluI	AGCT	4 cut(s)	73, 119, 151, 219
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	2 cut(s)	11, 148
ApoI	RAATTY	1 cut(s)	18
AsiSI	GCGATCGC	1 cut(s)	90
AsuII	TTCGAA	1 cut(s)	203
BalI	TGGCCA	1 cut(s)	213
BbvCI	CCTCAGC	1 cut(s)	152
BbvI	GCAGC	2 cut(s)	23, 160
BccI	CCATC	1 cut(s)	70
BciT130I	CCWGG	2 cut(s)	243, 256
BfaI	CTAG	1 cut(s)	33
BfmI	CTRYAG	1 cut(s)	9
BisI	GCNGC	3 cut(s)	12, 84, 149
BlsI	GCNGC	3 cut(s)	13, 85, 150
Bme1390I	CCNGG	2 cut(s)	243, 256
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	2 cut(s)	243, 256
BmsI	GCATC	2 cut(s)	28, 241
Bpu10I	CCTNAGC	1 cut(s)	152
Bpu14I	TTCGAA	1 cut(s)	203
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
BseBI	CCWGG	2 cut(s)	243, 256
BseGI	GGATG	1 cut(s)	256
BseMII	CTCAG	1 cut(s)	143
BseXI	GCAGC	2 cut(s)	23, 160
Bsh1285I	CGRYCG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	213
BsiEI	CGRYCG	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	114
BsnI	GGCC	1 cut(s)	213
Bsp119I	TTCGAA	1 cut(s)	203
Bsp143I	GATC	2 cut(s)	87, 226
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	51
BspMAI	CTGCAG	1 cut(s)	13
BspT104I	TTCGAA	1 cut(s)	203
BssMI	GATC	2 cut(s)	87, 226
Bst2UI	CCWGG	2 cut(s)	243, 256
Bst4CI	ACNGT	1 cut(s)	130
BstBI	TTCGAA	1 cut(s)	203
BstDEI	CTNAG	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	256
BstKTI	GATC	2 cut(s)	90, 229
BstMBI	GATC	2 cut(s)	87, 226
BstMCI	CGRYCG	1 cut(s)	90
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 89
BstNI	CCWGG	2 cut(s)	243, 256
BstSCI	CCNGG	2 cut(s)	241, 254
BstSFI	CTRYAG	1 cut(s)	9
BstV1I	GCAGC	2 cut(s)	23, 160
BsuRI	GGCC	1 cut(s)	213
BtgZI	GCGATG	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	126
CviAII	CATG	2 cut(s)	67, 170
CviJI	RGCY	8 cut(s)	73, 113, 119, 134, 151, 164, 213, 219
CviKI_1	RGCY	8 cut(s)	73, 113, 119, 134, 151, 164, 213, 219
DdeI	CTNAG	1 cut(s)	152
DpnI	GATC	2 cut(s)	89, 228
DpnII	GATC	2 cut(s)	87, 226
EaeI	YGGCCR	1 cut(s)	211
EcoRII	CCWGG	2 cut(s)	241, 254
FaeI	CATG	2 cut(s)	70, 173
FaiI	YATR	5 cut(s)	24, 68, 106, 171, 210
FatI	CATG	2 cut(s)	66, 169
Fnu4HI	GCNGC	3 cut(s)	12, 84, 149
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	3 cut(s)	12, 84, 149
FspBI	CTAG	1 cut(s)	33
GluI	GCNGC	3 cut(s)	12, 84, 149
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	1 cut(s)	114
Hin1II	CATG	2 cut(s)	70, 173
HpaII	CCGG	1 cut(s)	114
Hpy188I	TCNGA	1 cut(s)	54
HpyAV	CCTTC	1 cut(s)	240
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	1 cut(s)	11
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 89
HpyF3I	CTNAG	1 cut(s)	152
Hsp92II	CATG	2 cut(s)	70, 173
Kzo9I	GATC	2 cut(s)	87, 226
LmnI	GCTCC	2 cut(s)	70, 116
LpnPI	CCDG	7 cut(s)	32, 127, 227, 228, 241, 255, 268
Lsp1109I	GCAGC	2 cut(s)	23, 160
LweI	GCATC	2 cut(s)	28, 241
MaeI	CTAG	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	2 cut(s)	89, 228
MboI	GATC	2 cut(s)	87, 226
MboII	GAAGA	1 cut(s)	214
MlsI	TGGCCA	1 cut(s)	213
MluCI	AATT	1 cut(s)	18
MluNI	TGGCCA	1 cut(s)	213
MnlI	CCTC	3 cut(s)	73, 147, 154
Mox20I	TGGCCA	1 cut(s)	213
MscI	TGGCCA	1 cut(s)	213
MseI	TTAA	1 cut(s)	271
Msp20I	TGGCCA	1 cut(s)	213
MspA1I	CMGCKG	1 cut(s)	151
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	2 cut(s)	243, 256
MvaI	CCWGG	2 cut(s)	243, 256
MwoI	GCNNNNNNNGC	2 cut(s)	38, 89
NdeII	GATC	2 cut(s)	87, 226
NlaIII	CATG	2 cut(s)	70, 173
NlaIV	GGNNCC	1 cut(s)	51
NmeAIII	GCCGAG	1 cut(s)	134
NmuCI	GTSAC	1 cut(s)	124
NspV	TTCGAA	1 cut(s)	203
PkrI	GCNGC	3 cut(s)	13, 85, 150
Ple19I	CGATCG	1 cut(s)	90
PsiI	TTATAA	1 cut(s)	24
Psp6I	CCWGG	2 cut(s)	241, 254
PspGI	CCWGG	2 cut(s)	241, 254
PspN4I	GGNNCC	1 cut(s)	51
PstI	CTGCAG	1 cut(s)	13
PvuI	CGATCG	1 cut(s)	90
PvuII	CAGCTG	1 cut(s)	151
RgaI	GCGATCGC	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	271
SatI	GCNGC	3 cut(s)	12, 84, 149
Sau3AI	GATC	2 cut(s)	87, 226
ScrFI	CCNGG	2 cut(s)	243, 256
SetI	ASST	6 cut(s)	75, 121, 153, 221, 244, 260
SfaAI	GCGATCGC	1 cut(s)	90
SfaNI	GCATC	2 cut(s)	28, 241
SfcI	CTRYAG	1 cut(s)	9
SfuI	TTCGAA	1 cut(s)	203
SgfI	GCGATCGC	1 cut(s)	90
Sse9I	AATT	1 cut(s)	18
SsiI	CCGC	1 cut(s)	83
SspMI	CTAG	1 cut(s)	33
StyD4I	CCNGG	2 cut(s)	241, 254
TaaI	ACNGT	1 cut(s)	130
TaqI	TCGA	3 cut(s)	96, 203, 225
TasI	AATT	1 cut(s)	18
TauI	GCSGC	1 cut(s)	86
Tru1I	TTAA	1 cut(s)	271
Tru9I	TTAA	1 cut(s)	271
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	2 cut(s)	11, 148
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	172
TspRI	CASTG	1 cut(s)	133
XapI	RAATTY	1 cut(s)	18
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.