Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002158

Physical Location & Seq

Genomic Coordinates Forward (+)

40722239 .. 40724827

Gene Structure 2589 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G026410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCTTCTGCTTCTCCCGCCAAGAAGGTTCTGGTTCCGATTGCGAATGGCAAGGAGCCGGTGGAGGCGGTGATCGCCGTCGATGTTCTGCACCGAGCCGGAGCTGATGTCACTGTGGCTTCTGTGGAGAAGCAACTGAGGGTTGAGGCTTGTCATGGGGTTAAGATCATCGCTGATGCTTTGGTTTCGCACTGTGGCCAGAGCTCCTTCGATCTCATTACTCTACCTGGAGGGATGCCAGGTACTACCAATCTTAAGAATAGTGAAAGCTATGAACATATACTCGAGACTCTTTTTCATCTGTGCCATGGTTGTGTGTATATGGTTCTGCGAAGGCCAGTGATTTCTCTGCTTATGGACAAGGATAATGGGCAATATAAGGGTGTTAGATTAGTATCAGGTCAAGATTTGTTCAGTCATCGGCTGGTTTTGGATCCAACCTTCACGGTGCCACTGCCATCAGCTTCATCTCCACCGGTCCTTCCAAAAGAAAGTTTGGAAGGTGATAAAAGAAAAGTGGCCAGGGGCATATGTATTACAACAAGATCCTTGAAGCCAGATATACGAAACTTACTGCTTGTGTATCCTCCTAGATGTAAGGCTTCACTCATGAATTCTTTTGTAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005968 GO:0008150 GO:0009889 GO:0009893 GO:0010556 GO:0010604 GO:0017016 GO:0017137 GO:0019222 GO:0019899 GO:0031267 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051020 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0080090 GO:1902494 GO:1990234 GO:2000112 GO:2000539 GO:2000541

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDI

Protein Analysis

209

Amino Acids

22.63

Weight (kDa)

8.92

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DJ-1_PfpI	PF01965	8 - 99	6.7e-17	DJ-1/PfpI family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002158)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g10710
rosa_chinensis	RchiOBHm_Chr1g0352931 RchiOBHm_Chr1g0379931 RchiOBHm_Chr2g0127521 RchiOBHm_Chr5g0077921 RchiOBHm_Chr6g0254011 RchiOBHm_Chr7g0224991
rosa_laevigata	RLG00000010747 RLG00000036727
rosa_multiflora	Rmu_co8264081.1_g000001 Rmu_co8475729.1_g000001 Rmu_sc0000512.1_g000010 Rmu_sc0002563.1_g000056 Rmu_sc0003651.1_g000010 Rmu_sc0008382.1_g000016 Rmu_sc0011010.1_g000011 Rmu_sc0014844.1_g000012 Rmu_sc0017063.1_g000001 Rmu_sc0019512.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012710 Rroxscaffold_7G00161280
rosa_rugosa	Rorug01G0236000 Rorug02G0221700
rosa_samantha	Rh1BG320400 Rh1CG044300 Rh1CG334400 Rh1DG351000 Rh2AG096900 Rh2AG182700 Rh2BG335100 Rh2CG313300 Rh2CG351300 Rh2DG352700 Rh2DG390400 Rh3BG073400 Rh4CG209000 Rh5AG316800 Rh5AG511900 Rh6BG273400 Rh6BG434200 Rh6DG468100
rosa_wichuraiana	Rw2G026410 Rw4G021840 Rw6G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	448
AciI	CCGC	2 cut(s)	18, 68
AclWI	GGATC	3 cut(s)	428, 441, 540
AcoI	YGGCCR	2 cut(s)	196, 519
AcsI	RAATTY	1 cut(s)	613
AfaI	GTAC	1 cut(s)	244
AflII	CTTAAG	1 cut(s)	254
AgeI	ACCGGT	1 cut(s)	475
AgsI	TTSAA	1 cut(s)	553
AjnI	CCWGG	3 cut(s)	226, 238, 521
AluBI	AGCT	4 cut(s)	104, 204, 270, 464
AluI	AGCT	4 cut(s)	104, 204, 270, 464
Alw21I	GWGCWC	1 cut(s)	206
Alw26I	GTCTC	1 cut(s)	281
AlwI	GGATC	3 cut(s)	428, 441, 540
Ama87I	CYCGRG	1 cut(s)	284
AoxI	GGCC	3 cut(s)	196, 335, 519
ApoI	RAATTY	1 cut(s)	613
AsiGI	ACCGGT	1 cut(s)	475
AspS9I	GGNCC	1 cut(s)	478
AsuHPI	GGTGA	2 cut(s)	82, 515
AvaI	CYCGRG	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	478
BalI	TGGCCA	2 cut(s)	198, 521
BamHI	GGATCC	1 cut(s)	433
BanI	GGYRCC	1 cut(s)	448
BanII	GRGCYC	1 cut(s)	206
Bbv12I	GWGCWC	1 cut(s)	206
BccI	CCATC	1 cut(s)	466
BceAI	ACGGC	1 cut(s)	62
BciT130I	CCWGG	3 cut(s)	228, 240, 523
BciVI	GTATCC	1 cut(s)	594
BcoDI	GTCTC	1 cut(s)	281
BfaI	CTAG	1 cut(s)	591
BfrI	CTTAAG	1 cut(s)	254
BfuI	GTATCC	1 cut(s)	594
Bme1390I	CCNGG	3 cut(s)	228, 240, 523
Bme18I	GGWCC	1 cut(s)	478
BmeT110I	CYCGRG	1 cut(s)	284
BmgT120I	GGNCC	1 cut(s)	478
BmiI	GGNNCC	4 cut(s)	36, 57, 435, 450
BmrFI	CCNGG	3 cut(s)	228, 240, 523
BmsI	GCATC	2 cut(s)	166, 225
BpmI	CTGGAG	1 cut(s)	249
BsaBI	GATNNNNATC	1 cut(s)	394
BsaJI	CCNNGG	2 cut(s)	307, 522
BsaWI	WCCGGW	1 cut(s)	475
BsaXI	ACNNNNNCTCC	2 cut(s)	93, 123
Bse118I	RCCGGY	2 cut(s)	58, 475
Bse1I	ACTGG	1 cut(s)	338
Bse8I	GATNNNNATC	1 cut(s)	394
BseBI	CCWGG	3 cut(s)	228, 240, 523
BseDI	CCNNGG	2 cut(s)	307, 522
BseGI	GGATG	1 cut(s)	240
BseJI	GATNNNNATC	1 cut(s)	394
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	338
BsgI	GTGCAG	1 cut(s)	74
BshFI	GGCC	3 cut(s)	198, 337, 521
BshNI	GGYRCC	1 cut(s)	448
BshTI	ACCGGT	1 cut(s)	475
BsiHKAI	GWGCWC	1 cut(s)	206
BsiHKCI	CYCGRG	1 cut(s)	284
BsiSI	CCGG	3 cut(s)	59, 99, 476
BsmAI	GTCTC	1 cut(s)	281
BsnI	GGCC	3 cut(s)	198, 337, 521
BsoBI	CYCGRG	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	206
Bsp143I	GATC	5 cut(s)	72, 165, 211, 433, 545
Bsp19I	CCATGG	1 cut(s)	307
BspACI	CCGC	2 cut(s)	18, 68
BspANI	GGCC	3 cut(s)	198, 337, 521
BspCNI	CTCAG	1 cut(s)	129
BspHI	TCATGA	1 cut(s)	609
BspLI	GGNNCC	4 cut(s)	36, 57, 435, 450
BspPI	GGATC	3 cut(s)	428, 441, 540
BspT107I	GGYRCC	1 cut(s)	448
BspTI	CTTAAG	1 cut(s)	254
BsrFI	RCCGGY	2 cut(s)	58, 475
BsrI	ACTGG	1 cut(s)	338
BssAI	RCCGGY	2 cut(s)	58, 475
BssECI	CCNNGG	2 cut(s)	307, 522
BssMI	GATC	5 cut(s)	72, 165, 211, 433, 545
BssT1I	CCWWGG	1 cut(s)	307
Bst2UI	CCWGG	3 cut(s)	228, 240, 523
Bst4CI	ACNGT	3 cut(s)	115, 194, 448
BstAFI	CTTAAG	1 cut(s)	254
BstDEI	CTNAG	1 cut(s)	137
BstDSI	CCRYGG	1 cut(s)	307
BstF5I	GGATG	1 cut(s)	240
BstKTI	GATC	5 cut(s)	75, 168, 214, 436, 548
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	5 cut(s)	72, 165, 211, 433, 545
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 74
BstNI	CCWGG	3 cut(s)	228, 240, 523
BstSCI	CCNGG	3 cut(s)	226, 238, 521
BstX2I	RGATCY	2 cut(s)	433, 545
BstYI	RGATCY	2 cut(s)	433, 545
BsuI	GTATCC	1 cut(s)	594
BsuRI	GGCC	3 cut(s)	198, 337, 521
BtgI	CCRYGG	1 cut(s)	307
BtgZI	GCGATG	1 cut(s)	154
BtsCI	GGATG	1 cut(s)	240
BtsI	GCAGTG	1 cut(s)	452
BtsIMutI	CAGTG	4 cut(s)	111, 190, 345, 452
CciI	TCATGA	1 cut(s)	609
Cfr10I	RCCGGY	2 cut(s)	58, 475
Cfr13I	GGNCC	1 cut(s)	478
Csp6I	GTAC	1 cut(s)	243
CspAI	ACCGGT	1 cut(s)	475
CviAII	CATG	3 cut(s)	155, 308, 610
CviQI	GTAC	1 cut(s)	243
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	5 cut(s)	74, 167, 213, 435, 547
DpnII	GATC	5 cut(s)	72, 165, 211, 433, 545
EaeI	YGGCCR	2 cut(s)	196, 519
Ecl136II	GAGCTC	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	307
Eco24I	GRGCYC	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	478
Eco53kI	GAGCTC	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	284
EcoICRI	GAGCTC	1 cut(s)	204
EcoRI	GAATTC	1 cut(s)	613
EcoRII	CCWGG	3 cut(s)	226, 238, 521
EcoT14I	CCWWGG	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	307
FaeI	CATG	3 cut(s)	158, 311, 613
FatI	CATG	3 cut(s)	154, 307, 609
FauI	CCCGC	1 cut(s)	25
FauNDI	CATATG	1 cut(s)	530
FokI	GGATG	1 cut(s)	247
FriOI	GRGCYC	1 cut(s)	206
FspBI	CTAG	1 cut(s)	591
GsuI	CTGGAG	1 cut(s)	249
HaeIII	GGCC	3 cut(s)	198, 337, 521
HapII	CCGG	3 cut(s)	59, 99, 476
Hin1II	CATG	3 cut(s)	158, 311, 613
HinfI	GANTC	1 cut(s)	289
HpaII	CCGG	3 cut(s)	59, 99, 476
HphI	GGTGA	2 cut(s)	82, 515
Hpy188I	TCNGA	1 cut(s)	39
Hpy188III	TCNNGA	3 cut(s)	286, 404, 610
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	6 cut(s)	19, 217, 327, 451, 491, 494
HpyCH4III	ACNGT	3 cut(s)	115, 194, 448
HpyCH4V	TGCA	1 cut(s)	91
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 74
HpyF3I	CTNAG	1 cut(s)	137
Hsp92II	CATG	3 cut(s)	158, 311, 613
Kzo9I	GATC	5 cut(s)	72, 165, 211, 433, 545
LmnI	GCTCC	3 cut(s)	55, 101, 209
LweI	GCATC	2 cut(s)	166, 225
MaeI	CTAG	1 cut(s)	591
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	5 cut(s)	74, 167, 213, 435, 547
MboI	GATC	5 cut(s)	72, 165, 211, 433, 545
MflI	RGATCY	2 cut(s)	433, 545
MhlI	GDGCHC	1 cut(s)	206
MlsI	TGGCCA	2 cut(s)	198, 521
MluCI	AATT	1 cut(s)	613
MluNI	TGGCCA	2 cut(s)	198, 521
MlyI	GAGTC	1 cut(s)	283
MmeI	TCCRAC	1 cut(s)	461
MnlI	CCTC	5 cut(s)	58, 132, 139, 224, 597
Mox20I	TGGCCA	2 cut(s)	198, 521
MscI	TGGCCA	2 cut(s)	198, 521
MseI	TTAA	2 cut(s)	162, 255
MslI	CAYNNNNRTG	1 cut(s)	312
Msp20I	TGGCCA	2 cut(s)	198, 521
MspCI	CTTAAG	1 cut(s)	254
MspI	CCGG	3 cut(s)	59, 99, 476
MspR9I	CCNGG	3 cut(s)	228, 240, 523
MvaI	CCWGG	3 cut(s)	228, 240, 523
MwoI	GCNNNNNNNGC	2 cut(s)	17, 74
NcoI	CCATGG	1 cut(s)	307
NdeI	CATATG	1 cut(s)	530
NdeII	GATC	5 cut(s)	72, 165, 211, 433, 545
NlaIII	CATG	3 cut(s)	158, 311, 613
NlaIV	GGNNCC	4 cut(s)	36, 57, 435, 450
NmuCI	GTSAC	1 cut(s)	109
PaeR7I	CTCGAG	1 cut(s)	284
PagI	TCATGA	1 cut(s)	609
PinAI	ACCGGT	1 cut(s)	475
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
Psp124BI	GAGCTC	1 cut(s)	206
Psp6I	CCWGG	3 cut(s)	226, 238, 521
PspGI	CCWGG	3 cut(s)	226, 238, 521
PspN4I	GGNNCC	4 cut(s)	36, 57, 435, 450
PspPI	GGNCC	1 cut(s)	478
PsuI	RGATCY	2 cut(s)	433, 545
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
RseI	CAYNNNNRTG	1 cut(s)	312
SacI	GAGCTC	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	162, 255
Sau3AI	GATC	5 cut(s)	72, 165, 211, 433, 545
Sau96I	GGNCC	1 cut(s)	478
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	3 cut(s)	228, 240, 523
SduI	GDGCHC	1 cut(s)	206
SfaNI	GCATC	2 cut(s)	166, 225
Sfr274I	CTCGAG	1 cut(s)	284
SinI	GGWCC	1 cut(s)	478
SlaI	CTCGAG	1 cut(s)	284
SmiMI	CAYNNNNRTG	1 cut(s)	312
SmlI	CTYRAG	2 cut(s)	254, 284
SmoI	CTYRAG	2 cut(s)	254, 284
Sse9I	AATT	1 cut(s)	613
SsiI	CCGC	2 cut(s)	18, 68
SspMI	CTAG	1 cut(s)	591
SstI	GAGCTC	1 cut(s)	206
StyD4I	CCNGG	3 cut(s)	226, 238, 521
StyI	CCWWGG	1 cut(s)	307
TaaI	ACNGT	3 cut(s)	115, 194, 448
TaqI	TCGA	3 cut(s)	81, 210, 285
TasI	AATT	1 cut(s)	613
Tru1I	TTAA	2 cut(s)	162, 255
Tru9I	TTAA	2 cut(s)	162, 255
TscAI	CASTG	4 cut(s)	118, 197, 345, 459
TseFI	GTSAC	1 cut(s)	109
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	4 cut(s)	287, 288, 456, 626
TspRI	CASTG	4 cut(s)	118, 197, 345, 459
Vha464I	CTTAAG	1 cut(s)	254
VpaK11BI	GGWCC	1 cut(s)	478
XapI	RAATTY	1 cut(s)	613
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
XhoI	CTCGAG	1 cut(s)	284
XspI	CTAG	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.