Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002158

Physical Location & Seq

Genomic Coordinates Reverse (-)

49379704 .. 49382136

Gene Structure 2433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG273400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGATCGCCCTGAGGTCTCTAACCTCAATCGACAGTTTCTCTTCAGAAATCTTCAAGCTCGGCTGAAGAAGCCTCAAAGCCCATTGCTTTTCCATTCTCCAGCTCAAAAGTCCACCCTTTCATTCAAGAAATTTACTCCAATGGCTTCTCTGACCACCACCAACACCAGCGTTGGCCTCTCCAAAAGTTTCATCAAATTGAAGGAGCAAGGCAAGGCTGCAGCCACTCATGCCTTGGCAAGAGGGCCCAATTTGAATTCAATCCTGGCAATGTTGAAGGAGAACCAGCTCATTGGTGAGATTACCTTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

104

Amino Acids

11.55

Weight (kDa)

10.56

Isoelectric Point (pI)

28.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002158)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g10710
rosa_chinensis	RchiOBHm_Chr1g0352931 RchiOBHm_Chr1g0379931 RchiOBHm_Chr2g0127521 RchiOBHm_Chr5g0077921 RchiOBHm_Chr6g0254011 RchiOBHm_Chr7g0224991
rosa_laevigata	RLG00000010747 RLG00000036727
rosa_multiflora	Rmu_co8264081.1_g000001 Rmu_co8475729.1_g000001 Rmu_sc0000512.1_g000010 Rmu_sc0002563.1_g000056 Rmu_sc0003651.1_g000010 Rmu_sc0008382.1_g000016 Rmu_sc0011010.1_g000011 Rmu_sc0014844.1_g000012 Rmu_sc0017063.1_g000001 Rmu_sc0019512.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012710 Rroxscaffold_7G00161280
rosa_rugosa	Rorug01G0236000 Rorug02G0221700
rosa_samantha	Rh1BG320400 Rh1CG044300 Rh1CG334400 Rh1DG351000 Rh2AG096900 Rh2AG182700 Rh2BG335100 Rh2CG313300 Rh2CG351300 Rh2DG352700 Rh2DG390400 Rh3BG073400 Rh4CG209000 Rh5AG316800 Rh5AG511900 Rh6BG273400 Rh6BG434200 Rh6DG468100
rosa_wichuraiana	Rw2G026410 Rw4G021840 Rw6G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	2 cut(s)	131, 256
AcuI	CTGAAG	2 cut(s)	28, 86
AgsI	TTSAA	6 cut(s)	56, 127, 202, 256, 261, 277
AjnI	CCWGG	1 cut(s)	264
AluBI	AGCT	3 cut(s)	59, 104, 289
AluI	AGCT	3 cut(s)	59, 104, 289
Alw26I	GTCTC	1 cut(s)	22
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	2 cut(s)	175, 245
ApaI	GGGCCC	1 cut(s)	249
ApeKI	GCWGC	2 cut(s)	218, 221
ApoI	RAATTY	2 cut(s)	131, 256
AspS9I	GGNCC	2 cut(s)	245, 246
AsuHPI	GGTGA	1 cut(s)	308
AxyI	CCTNAGG	1 cut(s)	12
BaeGI	GKGCMC	1 cut(s)	249
BanII	GRGCYC	1 cut(s)	249
BbvI	GCAGC	2 cut(s)	205, 233
BciT130I	CCWGG	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	22
BfmI	CTRYAG	1 cut(s)	219
BisI	GCNGC	2 cut(s)	219, 222
BlsI	GCNGC	2 cut(s)	220, 223
Bme1390I	CCNGG	1 cut(s)	266
BmgT120I	GGNCC	2 cut(s)	245, 246
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	1 cut(s)	266
BpmI	CTGGAG	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	22
BsaJI	CCNNGG	2 cut(s)	234, 306
Bse21I	CCTNAGG	1 cut(s)	12
Bse3DI	GCAATG	2 cut(s)	83, 276
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	2 cut(s)	234, 306
BseMI	GCAATG	2 cut(s)	83, 276
BseSI	GKGCMC	1 cut(s)	249
BseXI	GCAGC	2 cut(s)	205, 233
BshFI	GGCC	2 cut(s)	177, 247
BsmAI	GTCTC	1 cut(s)	22
BsnI	GGCC	2 cut(s)	177, 247
Bso31I	GGTCTC	1 cut(s)	22
Bsp120I	GGGCCC	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	1 cut(s)	4
BspANI	GGCC	2 cut(s)	177, 247
BspCNI	CTCAG	1 cut(s)	4
BspLI	GGNNCC	1 cut(s)	247
BspMAI	CTGCAG	1 cut(s)	223
BspPI	GGATC	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	22
BsrDI	GCAATG	2 cut(s)	83, 276
BssECI	CCNNGG	2 cut(s)	234, 306
BssMI	GATC	1 cut(s)	4
BssT1I	CCWWGG	2 cut(s)	234, 306
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	1 cut(s)	36
Bst6I	CTCTTC	1 cut(s)	47
BstDEI	CTNAG	1 cut(s)	12
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 230
BstNI	CCWGG	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	264
BstSFI	CTRYAG	1 cut(s)	219
BstSLI	GKGCMC	1 cut(s)	249
BstV1I	GCAGC	2 cut(s)	205, 233
BstXI	CCANNNNNNTGG	1 cut(s)	293
Bsu36I	CCTNAGG	1 cut(s)	12
BsuRI	GGCC	2 cut(s)	177, 247
Cfr13I	GGNCC	2 cut(s)	245, 246
CviAII	CATG	1 cut(s)	230
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Eco130I	CCWWGG	2 cut(s)	234, 306
Eco24I	GRGCYC	1 cut(s)	249
Eco31I	GGTCTC	1 cut(s)	22
Eco57I	CTGAAG	2 cut(s)	28, 86
Eco81I	CCTNAGG	1 cut(s)	12
EcoO109I	RGGNCCY	1 cut(s)	245
EcoRI	GAATTC	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	264
EcoT14I	CCWWGG	2 cut(s)	234, 306
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	2 cut(s)	234, 306
FaeI	CATG	1 cut(s)	233
FaiI	YATR	1 cut(s)	231
FatI	CATG	1 cut(s)	229
Fnu4HI	GCNGC	2 cut(s)	219, 222
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	2 cut(s)	219, 222
GluI	GCNGC	2 cut(s)	219, 222
GsuI	CTGGAG	1 cut(s)	84
HaeIII	GGCC	2 cut(s)	177, 247
Hin1II	CATG	1 cut(s)	233
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	2 cut(s)	47, 153
Hpy188III	TCNNGA	1 cut(s)	127
Hpy8I	GTNNAC	1 cut(s)	114
HpyAV	CCTTC	2 cut(s)	196, 271
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4V	TGCA	1 cut(s)	221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 230
HpyF3I	CTNAG	1 cut(s)	12
Hsp92II	CATG	1 cut(s)	233
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	6 cut(s)	24, 114, 181, 251, 278, 299
Lsp1109I	GCAGC	2 cut(s)	205, 233
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	3 cut(s)	34, 44, 79
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	4 cut(s)	131, 197, 250, 256
MnlI	CCTC	5 cut(s)	7, 35, 84, 188, 236
MspR9I	CCNGG	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	266
MwoI	GCNNNNNNNGC	2 cut(s)	70, 230
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	1 cut(s)	233
NlaIV	GGNNCC	1 cut(s)	247
NmeAIII	GCCGAG	1 cut(s)	40
PkrI	GCNGC	2 cut(s)	220, 223
Psp6I	CCWGG	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	247
PspOMI	GGGCCC	1 cut(s)	245
PspPI	GGNCC	2 cut(s)	245, 246
PstI	CTGCAG	1 cut(s)	223
SatI	GCNGC	2 cut(s)	219, 222
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	2 cut(s)	245, 246
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	6 cut(s)	18, 27, 61, 106, 291, 308
SfcI	CTRYAG	1 cut(s)	219
Sse9I	AATT	4 cut(s)	131, 197, 250, 256
StyD4I	CCNGG	1 cut(s)	264
StyI	CCWWGG	2 cut(s)	234, 306
TaaI	ACNGT	1 cut(s)	36
TaqI	TCGA	1 cut(s)	31
TasI	AATT	4 cut(s)	131, 197, 250, 256
TseI	GCWGC	2 cut(s)	218, 221
TspDTI	ATGAA	2 cut(s)	111, 181
XapI	RAATTY	2 cut(s)	131, 256
XcmI	CCANNNNNNNNNTGG	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.