Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002158

Physical Location & Seq

Genomic Coordinates Reverse (-)

47437603 .. 47442346

Gene Structure 4744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG351300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGACGTCTGACACTAGAAATTTACACAATACTGAAGCAATAGCAGAAGCATTTGAGAAGTTAACAAAACGGAAAGACATTGTGACAATGAGGGATGCTCTAAACTCTGCCTTCGATGAGGAAATGTATGTCGATCTGAAAGTGTTTTTGATGGGTCAAGAGATGCCAGAAATGGATGGATTTGAGGCAACAAGGGAGATAAGGAAAGTGGAGAAAACTCACCATGTCCGCATTCCGATCATTGCATTAACAGCTTATACACCAGGTGAGGAAACAAGAAGGATGTTGGAGGCCGGCATGCATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

102

Amino Acids

11.76

Weight (kDa)

5.34

Isoelectric Point (pI)

36.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	31 - 102	2.1e-08	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002158)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g10710
rosa_chinensis	RchiOBHm_Chr1g0352931 RchiOBHm_Chr1g0379931 RchiOBHm_Chr2g0127521 RchiOBHm_Chr5g0077921 RchiOBHm_Chr6g0254011 RchiOBHm_Chr7g0224991
rosa_laevigata	RLG00000010747 RLG00000036727
rosa_multiflora	Rmu_co8264081.1_g000001 Rmu_co8475729.1_g000001 Rmu_sc0000512.1_g000010 Rmu_sc0002563.1_g000056 Rmu_sc0003651.1_g000010 Rmu_sc0008382.1_g000016 Rmu_sc0011010.1_g000011 Rmu_sc0014844.1_g000012 Rmu_sc0017063.1_g000001 Rmu_sc0019512.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012710 Rroxscaffold_7G00161280
rosa_rugosa	Rorug01G0236000 Rorug02G0221700
rosa_samantha	Rh1BG320400 Rh1CG044300 Rh1CG334400 Rh1DG351000 Rh2AG096900 Rh2AG182700 Rh2BG335100 Rh2CG313300 Rh2CG351300 Rh2DG352700 Rh2DG390400 Rh3BG073400 Rh4CG209000 Rh5AG316800 Rh5AG511900 Rh6BG273400 Rh6BG434200 Rh6DG468100
rosa_wichuraiana	Rw2G026410 Rw4G021840 Rw6G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
AciI	CCGC	1 cut(s)	229
AcsI	RAATTY	1 cut(s)	19
AcuI	CTGAAG	1 cut(s)	54
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	266
AjnI	CCWGG	1 cut(s)	262
AluBI	AGCT	1 cut(s)	254
AluI	AGCT	1 cut(s)	254
AoxI	GGCC	1 cut(s)	291
ApoI	RAATTY	1 cut(s)	19
AsuHPI	GGTGA	2 cut(s)	212, 278
BccI	CCATC	2 cut(s)	145, 170
BciT130I	CCWGG	1 cut(s)	264
BfaI	CTAG	1 cut(s)	15
Bme1390I	CCNGG	1 cut(s)	264
BmrFI	CCNGG	1 cut(s)	264
BmsI	GCATC	2 cut(s)	85, 153
BplI	GAGNNNNNCTC	2 cut(s)	82, 114
BsaHI	GRCGYC	1 cut(s)	5
Bse118I	RCCGGY	1 cut(s)	293
Bse3DI	GCAATG	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	264
BseGI	GGATG	3 cut(s)	100, 181, 288
BseMI	GCAATG	1 cut(s)	240
BshFI	GGCC	1 cut(s)	293
BsiSI	CCGG	1 cut(s)	294
BsmI	GAATGC	1 cut(s)	231
BsnI	GGCC	1 cut(s)	293
Bsp143I	GATC	2 cut(s)	133, 237
BspACI	CCGC	1 cut(s)	229
BspANI	GGCC	1 cut(s)	293
BsrDI	GCAATG	1 cut(s)	240
BsrFI	RCCGGY	1 cut(s)	293
BssAI	RCCGGY	1 cut(s)	293
BssMI	GATC	2 cut(s)	133, 237
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	264
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	295, 299
BstF5I	GGATG	3 cut(s)	100, 181, 288
BstKTI	GATC	2 cut(s)	136, 240
BstMBI	GATC	2 cut(s)	133, 237
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstNI	CCWGG	1 cut(s)	264
BstNSI	RCATGY	1 cut(s)	301
BstSCI	CCNGG	1 cut(s)	262
BsuRI	GGCC	1 cut(s)	293
BtsCI	GGATG	3 cut(s)	100, 181, 288
Cac8I	GCNNGC	2 cut(s)	295, 299
Cfr10I	RCCGGY	1 cut(s)	293
CsiI	ACCWGGT	1 cut(s)	262
CviAII	CATG	3 cut(s)	224, 298, 302
CviJI	RGCY	2 cut(s)	254, 293
CviKI_1	RGCY	2 cut(s)	254, 293
DpnI	GATC	2 cut(s)	135, 239
DpnII	GATC	2 cut(s)	133, 237
DraIII	CACNNNGTG	1 cut(s)	266
Eco57I	CTGAAG	1 cut(s)	54
EcoRII	CCWGG	1 cut(s)	262
EcoT22I	ATGCAT	1 cut(s)	303
FaeI	CATG	3 cut(s)	227, 301, 305
FaiI	YATR	5 cut(s)	129, 225, 258, 299, 303
FatI	CATG	3 cut(s)	223, 297, 301
FokI	GGATG	3 cut(s)	107, 188, 295
FspBI	CTAG	1 cut(s)	15
HaeIII	GGCC	1 cut(s)	293
HapII	CCGG	1 cut(s)	294
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	227, 301, 305
HincII	GTYRAC	1 cut(s)	63
HindII	GTYRAC	1 cut(s)	63
HpaI	GTTAAC	1 cut(s)	63
HpaII	CCGG	1 cut(s)	294
HphI	GGTGA	2 cut(s)	212, 278
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188I	TCNGA	3 cut(s)	10, 138, 237
Hpy188III	TCNNGA	1 cut(s)	158
Hpy8I	GTNNAC	1 cut(s)	63
HpyAV	CCTTC	2 cut(s)	121, 273
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	2 cut(s)	245, 301
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpySE526I	ACGT	1 cut(s)	5
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	227, 301, 305
KroI	GCCGGC	1 cut(s)	293
KroNI	GCCGGC	1 cut(s)	295
KspAI	GTTAAC	1 cut(s)	63
Kzo9I	GATC	2 cut(s)	133, 237
LpnPI	CCDG	3 cut(s)	180, 249, 276
LweI	GCATC	2 cut(s)	85, 153
MabI	ACCWGGT	1 cut(s)	262
MaeI	CTAG	1 cut(s)	15
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	2 cut(s)	135, 239
MboI	GATC	2 cut(s)	133, 237
MluCI	AATT	1 cut(s)	19
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	5 cut(s)	84, 112, 178, 262, 283
Mph1103I	ATGCAT	1 cut(s)	303
MroNI	GCCGGC	1 cut(s)	293
MseI	TTAA	2 cut(s)	62, 248
MspI	CCGG	1 cut(s)	294
MspR9I	CCNGG	1 cut(s)	264
Mva1269I	GAATGC	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	1 cut(s)	251
NaeI	GCCGGC	1 cut(s)	295
NdeII	GATC	2 cut(s)	133, 237
NgoMIV	GCCGGC	1 cut(s)	293
NlaIII	CATG	3 cut(s)	227, 301, 305
NmuCI	GTSAC	1 cut(s)	82
NsiI	ATGCAT	1 cut(s)	303
NspI	RCATGY	1 cut(s)	301
PaeI	GCATGC	1 cut(s)	301
PctI	GAATGC	1 cut(s)	231
PdiI	GCCGGC	1 cut(s)	295
Psp6I	CCWGG	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	262
SaqAI	TTAA	2 cut(s)	62, 248
Sau3AI	GATC	2 cut(s)	133, 237
ScrFI	CCNGG	1 cut(s)	264
SetI	ASST	3 cut(s)	8, 256, 268
SexAI	ACCWGGT	1 cut(s)	262
SfaNI	GCATC	2 cut(s)	85, 153
SgeI	CNNG	8 cut(s)	27, 170, 179, 204, 236, 275, 276, 288
SphI	GCATGC	1 cut(s)	301
Sse9I	AATT	1 cut(s)	19
SsiI	CCGC	1 cut(s)	229
SspMI	CTAG	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	262
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	2 cut(s)	114, 132
TasI	AATT	1 cut(s)	19
Tru1I	TTAA	2 cut(s)	62, 248
Tru9I	TTAA	2 cut(s)	62, 248
TseFI	GTSAC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	82
TspGWI	ACGGA	1 cut(s)	85
XapI	RAATTY	1 cut(s)	19
XceI	RCATGY	1 cut(s)	301
XspI	CTAG	1 cut(s)	15
ZraI	GACGTC	1 cut(s)	6
Zsp2I	ATGCAT	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.