Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002158

Physical Location & Seq

Genomic Coordinates Forward (+)

39607375 .. 39610055

Gene Structure 2681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG313300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGACTCCGACTCGGCGACTCAGTGGTGGTTCACCATCGGGGTCCGATTCAAGCTCCATATAACCCCTACAACAATCCTTCGCCCTTCTCTCACTACCAAAACCATTCCTTCACTCTCTTTCTCTCTCTCTTCCACCGCCATATCTTCTGCTTCTCCCGCCAAGAAGGTTCTGGTTCCGATTGCGAATGGCAAGGAGCCGATGGAGGCGGTGATCGCCGTCGATGTTCTGCGCCGAGCCGGAGCTGATGTCACTGTGGCTTCTGTGGAGAAGCAACTGAGGGTTGAGGCTTGTCATGGGGTTAAGATCATCGCTGATGCTTTGGTTTCGCACTGTGGCCAGAGCTCCTTCGATCTCATTACTCTACCTGGAGGGATGCCAGGTATTACCAATCTTAAGAATAGTCAAAGCTATGAACATATACTCGAGACTCTTTTTCATCTGTGCCATGGTTGTGTGTATATGGTTCTGCGAAGGCCAGTGATTTCTCTGCTTATGGACAAGGATAGTGGGCAATATAAGGGTGTTAGATTAGTTTCAGGTCAAGATTTGTTCAGTCCTGGTTTTGGATCCAACCTTCACGGTGCCACTGCCATCAGCTTCATCTCCACCGGTCCTAGGCCTGGCAACGTGCGGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0006081 GO:0006082 GO:0006089 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009438 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019172 GO:0019249 GO:0019752 GO:0030054 GO:0031090 GO:0032787 GO:0042180 GO:0042182 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046185 GO:0046394 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051596 GO:0055044 GO:0061727 GO:0065007 GO:0071704 GO:0071944 GO:0072330 GO:0080134 GO:0080135 GO:0098588 GO:0098805 GO:1900407 GO:1900409 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902882 GO:1902884

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

213

Amino Acids

22.84

Weight (kDa)

9.16

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DJ-1_PfpI	PF01965	55 - 146	8.9e-17	DJ-1/PfpI family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002158)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g10710
rosa_chinensis	RchiOBHm_Chr1g0352931 RchiOBHm_Chr1g0379931 RchiOBHm_Chr2g0127521 RchiOBHm_Chr5g0077921 RchiOBHm_Chr6g0254011 RchiOBHm_Chr7g0224991
rosa_laevigata	RLG00000010747 RLG00000036727
rosa_multiflora	Rmu_co8264081.1_g000001 Rmu_co8475729.1_g000001 Rmu_sc0000512.1_g000010 Rmu_sc0002563.1_g000056 Rmu_sc0003651.1_g000010 Rmu_sc0008382.1_g000016 Rmu_sc0011010.1_g000011 Rmu_sc0014844.1_g000012 Rmu_sc0017063.1_g000001 Rmu_sc0019512.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012710 Rroxscaffold_7G00161280
rosa_rugosa	Rorug01G0236000 Rorug02G0221700
rosa_samantha	Rh1BG320400 Rh1CG044300 Rh1CG334400 Rh1DG351000 Rh2AG096900 Rh2AG182700 Rh2BG335100 Rh2CG313300 Rh2CG351300 Rh2DG352700 Rh2DG390400 Rh3BG073400 Rh4CG209000 Rh5AG316800 Rh5AG511900 Rh6BG273400 Rh6BG434200 Rh6DG468100
rosa_wichuraiana	Rw2G026410 Rw4G021840 Rw6G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	584
AciI	CCGC	4 cut(s)	138, 159, 209, 634
AclWI	GGATC	2 cut(s)	564, 577
AcoI	YGGCCR	1 cut(s)	337
AfiI	CCNNNNNNNGG	3 cut(s)	566, 618, 623
AflII	CTTAAG	1 cut(s)	395
AgeI	ACCGGT	1 cut(s)	611
AgsI	TTSAA	1 cut(s)	52
AjnI	CCWGG	4 cut(s)	367, 379, 559, 622
AluBI	AGCT	5 cut(s)	55, 245, 345, 411, 600
AluI	AGCT	5 cut(s)	55, 245, 345, 411, 600
Alw21I	GWGCWC	1 cut(s)	347
Alw26I	GTCTC	1 cut(s)	422
AlwI	GGATC	2 cut(s)	564, 577
Ama87I	CYCGRG	1 cut(s)	425
AoxI	GGCC	3 cut(s)	337, 476, 620
AsiGI	ACCGGT	1 cut(s)	611
AspA2I	CCTAGG	1 cut(s)	617
AspLEI	GCGC	1 cut(s)	234
AspS9I	GGNCC	2 cut(s)	43, 614
AsuHPI	GGTGA	2 cut(s)	25, 223
AvaI	CYCGRG	1 cut(s)	425
AvaII	GGWCC	2 cut(s)	43, 614
AvrII	CCTAGG	1 cut(s)	617
BalI	TGGCCA	1 cut(s)	339
BamHI	GGATCC	1 cut(s)	569
BanI	GGYRCC	1 cut(s)	584
BanII	GRGCYC	1 cut(s)	347
Bbv12I	GWGCWC	1 cut(s)	347
BccI	CCATC	3 cut(s)	44, 196, 602
BceAI	ACGGC	1 cut(s)	203
BciT130I	CCWGG	4 cut(s)	369, 381, 561, 624
BcoDI	GTCTC	1 cut(s)	422
BfaI	CTAG	1 cut(s)	618
BfrI	CTTAAG	1 cut(s)	395
BlnI	CCTAGG	1 cut(s)	617
Bme1390I	CCNGG	4 cut(s)	369, 381, 561, 624
Bme18I	GGWCC	2 cut(s)	43, 614
BmeT110I	CYCGRG	1 cut(s)	425
BmgT120I	GGNCC	2 cut(s)	43, 614
BmiI	GGNNCC	5 cut(s)	44, 177, 198, 571, 586
BmrFI	CCNGG	4 cut(s)	369, 381, 561, 624
BmsI	GCATC	2 cut(s)	307, 366
BpmI	CTGGAG	1 cut(s)	390
BsaJI	CCNNGG	2 cut(s)	448, 617
BsaWI	WCCGGW	1 cut(s)	611
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
Bsc4I	CCNNNNNNNGG	3 cut(s)	566, 618, 623
Bse118I	RCCGGY	1 cut(s)	611
Bse1I	ACTGG	1 cut(s)	479
BseBI	CCWGG	4 cut(s)	369, 381, 561, 624
BseDI	CCNNGG	2 cut(s)	448, 617
BseGI	GGATG	1 cut(s)	381
BseLI	CCNNNNNNNGG	3 cut(s)	566, 618, 623
BseMII	CTCAG	2 cut(s)	35, 269
BseNI	ACTGG	1 cut(s)	479
BshFI	GGCC	3 cut(s)	339, 478, 622
BshNI	GGYRCC	1 cut(s)	584
BshTI	ACCGGT	1 cut(s)	611
BsiHKAI	GWGCWC	1 cut(s)	347
BsiHKCI	CYCGRG	1 cut(s)	425
BsiSI	CCGG	2 cut(s)	240, 612
BslI	CCNNNNNNNGG	3 cut(s)	566, 618, 623
BsmAI	GTCTC	1 cut(s)	422
BsnI	GGCC	3 cut(s)	339, 478, 622
BsoBI	CYCGRG	1 cut(s)	425
Bsp1286I	GDGCHC	1 cut(s)	347
Bsp143I	GATC	4 cut(s)	213, 306, 352, 569
Bsp19I	CCATGG	1 cut(s)	448
BspACI	CCGC	4 cut(s)	138, 159, 209, 634
BspANI	GGCC	3 cut(s)	339, 478, 622
BspCNI	CTCAG	2 cut(s)	34, 270
BspLI	GGNNCC	5 cut(s)	44, 177, 198, 571, 586
BspPI	GGATC	2 cut(s)	564, 577
BspT107I	GGYRCC	1 cut(s)	584
BspTI	CTTAAG	1 cut(s)	395
BsrFI	RCCGGY	1 cut(s)	611
BsrI	ACTGG	1 cut(s)	479
BssAI	RCCGGY	1 cut(s)	611
BssECI	CCNNGG	2 cut(s)	448, 617
BssMI	GATC	4 cut(s)	213, 306, 352, 569
BssT1I	CCWWGG	2 cut(s)	448, 617
Bst2UI	CCWGG	4 cut(s)	369, 381, 561, 624
Bst4CI	ACNGT	3 cut(s)	256, 335, 584
Bst6I	CTCTTC	1 cut(s)	136
BstAFI	CTTAAG	1 cut(s)	395
BstDEI	CTNAG	2 cut(s)	21, 278
BstDSI	CCRYGG	1 cut(s)	448
BstF5I	GGATG	1 cut(s)	381
BstHHI	GCGC	1 cut(s)	234
BstKTI	GATC	4 cut(s)	216, 309, 355, 572
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	4 cut(s)	213, 306, 352, 569
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 215
BstNI	CCWGG	4 cut(s)	369, 381, 561, 624
BstSCI	CCNGG	4 cut(s)	367, 379, 559, 622
BstX2I	RGATCY	1 cut(s)	569
BstYI	RGATCY	1 cut(s)	569
BsuRI	GGCC	3 cut(s)	339, 478, 622
BtgI	CCRYGG	1 cut(s)	448
BtgZI	GCGATG	1 cut(s)	295
BtsCI	GGATG	1 cut(s)	381
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	5 cut(s)	29, 252, 331, 486, 588
CfoI	GCGC	1 cut(s)	234
Cfr10I	RCCGGY	1 cut(s)	611
Cfr13I	GGNCC	2 cut(s)	43, 614
CspAI	ACCGGT	1 cut(s)	611
CspCI	CAANNNNNGTGG	2 cut(s)	490, 525
CviAII	CATG	2 cut(s)	296, 449
DdeI	CTNAG	2 cut(s)	21, 278
DpnI	GATC	4 cut(s)	215, 308, 354, 571
DpnII	GATC	4 cut(s)	213, 306, 352, 569
EaeI	YGGCCR	1 cut(s)	337
Eam1104I	CTCTTC	1 cut(s)	136
EarI	CTCTTC	1 cut(s)	136
Ecl136II	GAGCTC	1 cut(s)	345
Eco130I	CCWWGG	2 cut(s)	448, 617
Eco147I	AGGCCT	1 cut(s)	622
Eco24I	GRGCYC	1 cut(s)	347
Eco47I	GGWCC	2 cut(s)	43, 614
Eco53kI	GAGCTC	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	425
EcoICRI	GAGCTC	1 cut(s)	345
EcoRII	CCWGG	4 cut(s)	367, 379, 559, 622
EcoT14I	CCWWGG	2 cut(s)	448, 617
EcoT38I	GRGCYC	1 cut(s)	347
ErhI	CCWWGG	2 cut(s)	448, 617
FaeI	CATG	2 cut(s)	299, 452
FatI	CATG	2 cut(s)	295, 448
FauI	CCCGC	2 cut(s)	166, 627
FokI	GGATG	1 cut(s)	388
FriOI	GRGCYC	1 cut(s)	347
FspBI	CTAG	1 cut(s)	618
GlaI	GCGC	1 cut(s)	233
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	3 cut(s)	339, 478, 622
HapII	CCGG	2 cut(s)	240, 612
HhaI	GCGC	1 cut(s)	234
Hin1II	CATG	2 cut(s)	299, 452
Hin6I	GCGC	1 cut(s)	232
HinP1I	GCGC	1 cut(s)	232
HinfI	GANTC	5 cut(s)	5, 11, 19, 48, 430
HpaII	CCGG	2 cut(s)	240, 612
HphI	GGTGA	2 cut(s)	25, 223
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	3 cut(s)	10, 47, 180
Hpy188III	TCNNGA	2 cut(s)	427, 545
Hpy8I	GTNNAC	1 cut(s)	33
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	7 cut(s)	89, 96, 120, 160, 358, 468, 587
HpyCH4III	ACNGT	3 cut(s)	256, 335, 584
HpyCH4IV	ACGT	1 cut(s)	630
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 215
HpyF3I	CTNAG	2 cut(s)	21, 278
HpySE526I	ACGT	1 cut(s)	630
Hsp92II	CATG	2 cut(s)	299, 452
HspAI	GCGC	1 cut(s)	232
Kzo9I	GATC	4 cut(s)	213, 306, 352, 569
LmnI	GCTCC	4 cut(s)	60, 196, 242, 350
LweI	GCATC	2 cut(s)	307, 366
MaeI	CTAG	1 cut(s)	618
MaeII	ACGT	1 cut(s)	630
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	4 cut(s)	215, 308, 354, 571
MboI	GATC	4 cut(s)	213, 306, 352, 569
MboII	GAAGA	2 cut(s)	123, 138
MflI	RGATCY	1 cut(s)	569
MhlI	GDGCHC	1 cut(s)	347
MlsI	TGGCCA	1 cut(s)	339
MluNI	TGGCCA	1 cut(s)	339
MlyI	GAGTC	3 cut(s)	5, 13, 424
MmeI	TCCRAC	2 cut(s)	33, 597
MnlI	CCTC	4 cut(s)	199, 273, 280, 365
Mox20I	TGGCCA	1 cut(s)	339
MscI	TGGCCA	1 cut(s)	339
MseI	TTAA	2 cut(s)	303, 396
MslI	CAYNNNNRTG	1 cut(s)	453
Msp20I	TGGCCA	1 cut(s)	339
MspCI	CTTAAG	1 cut(s)	395
MspI	CCGG	2 cut(s)	240, 612
MspR9I	CCNGG	4 cut(s)	369, 381, 561, 624
MvaI	CCWGG	4 cut(s)	369, 381, 561, 624
MwoI	GCNNNNNNNGC	2 cut(s)	158, 215
NcoI	CCATGG	1 cut(s)	448
NdeII	GATC	4 cut(s)	213, 306, 352, 569
NlaIII	CATG	2 cut(s)	299, 452
NlaIV	GGNNCC	5 cut(s)	44, 177, 198, 571, 586
NmeAIII	GCCGAG	1 cut(s)	260
NmuCI	GTSAC	1 cut(s)	250
PaeR7I	CTCGAG	1 cut(s)	425
PceI	AGGCCT	1 cut(s)	622
PfeI	GAWTC	1 cut(s)	48
PinAI	ACCGGT	1 cut(s)	611
PleI	GAGTC	3 cut(s)	5, 13, 424
PpsI	GAGTC	3 cut(s)	5, 13, 424
Psp124BI	GAGCTC	1 cut(s)	347
Psp6I	CCWGG	4 cut(s)	367, 379, 559, 622
PspGI	CCWGG	4 cut(s)	367, 379, 559, 622
PspN4I	GGNNCC	5 cut(s)	44, 177, 198, 571, 586
PspPI	GGNCC	2 cut(s)	43, 614
PsuI	RGATCY	1 cut(s)	569
RseI	CAYNNNNRTG	1 cut(s)	453
SacI	GAGCTC	1 cut(s)	347
SaqAI	TTAA	2 cut(s)	303, 396
Sau3AI	GATC	4 cut(s)	213, 306, 352, 569
Sau96I	GGNCC	2 cut(s)	43, 614
SchI	GAGTC	3 cut(s)	5, 13, 424
ScrFI	CCNGG	4 cut(s)	369, 381, 561, 624
SduI	GDGCHC	1 cut(s)	347
SfaNI	GCATC	2 cut(s)	307, 366
Sfr274I	CTCGAG	1 cut(s)	425
SinI	GGWCC	2 cut(s)	43, 614
SlaI	CTCGAG	1 cut(s)	425
SmiMI	CAYNNNNRTG	1 cut(s)	453
SmlI	CTYRAG	2 cut(s)	395, 425
SmoI	CTYRAG	2 cut(s)	395, 425
SseBI	AGGCCT	1 cut(s)	622
SsiI	CCGC	4 cut(s)	138, 159, 209, 634
SspMI	CTAG	1 cut(s)	618
SstI	GAGCTC	1 cut(s)	347
StuI	AGGCCT	1 cut(s)	622
StyD4I	CCNGG	4 cut(s)	367, 379, 559, 622
StyI	CCWWGG	2 cut(s)	448, 617
TaaI	ACNGT	3 cut(s)	256, 335, 584
TaiI	ACGT	1 cut(s)	633
TaqI	TCGA	3 cut(s)	222, 351, 426
TfiI	GAWTC	1 cut(s)	48
Tru1I	TTAA	2 cut(s)	303, 396
Tru9I	TTAA	2 cut(s)	303, 396
TscAI	CASTG	5 cut(s)	29, 259, 338, 486, 595
TseFI	GTSAC	1 cut(s)	250
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	3 cut(s)	428, 429, 592
TspRI	CASTG	5 cut(s)	29, 259, 338, 486, 595
Vha464I	CTTAAG	1 cut(s)	395
VpaK11BI	GGWCC	2 cut(s)	43, 614
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169
XhoI	CTCGAG	1 cut(s)	425
XmaJI	CCTAGG	1 cut(s)	617
XspI	CTAG	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.