Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002158

Physical Location & Seq

Genomic Coordinates Reverse (-)

5201127 .. 5327496

Gene Structure 126370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG073400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAAGGATCTAAATCATTCCCAATTCCTACAAATTTGTGATGGAAATTGTTTGGAGGTTGAAGCTAGCCTCCCTAAAACATGCTTATATGTCTATGATCAAGGAAAGGTGGACCATGTGCCCAATAGACTAGCACCAGATGAGTTAAAGTATCCACCAATAAGCATCGATCTCATATGCAATTGCGTTCATGAAACTCCGATTGGTGATTCTGTTCAACCATATATGGTTCAGATTTCTTCTCTTCCGACTAAGCAAATAGCAGATTTCACTATGGTTTTCACTGGTTTTGCTTGTGCTCTATGCTGGTCCCTTCAAGTATTGCTGATGACAGTGAGGGATGCTCTAAACTCTGCCTTCGATGAGAAAATGTATGCCGATCTAAAAGTGTTTTTGATGGTTGAAGAGGTCAGGAGACGTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0031090 GO:0031974 GO:0031981 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0070013 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko04066 ko04922 ko05230 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200 map04066 map04922 map05230

Pfam Domains

Protein Families

Transket_pyr Transketolase_C

Protein Analysis

141

Amino Acids

15.96

Weight (kDa)

4.9

Isoelectric Point (pI)

49.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002158)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g10710
rosa_chinensis	RchiOBHm_Chr1g0352931 RchiOBHm_Chr1g0379931 RchiOBHm_Chr2g0127521 RchiOBHm_Chr5g0077921 RchiOBHm_Chr6g0254011 RchiOBHm_Chr7g0224991
rosa_laevigata	RLG00000010747 RLG00000036727
rosa_multiflora	Rmu_co8264081.1_g000001 Rmu_co8475729.1_g000001 Rmu_sc0000512.1_g000010 Rmu_sc0002563.1_g000056 Rmu_sc0003651.1_g000010 Rmu_sc0008382.1_g000016 Rmu_sc0011010.1_g000011 Rmu_sc0014844.1_g000012 Rmu_sc0017063.1_g000001 Rmu_sc0019512.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012710 Rroxscaffold_7G00161280
rosa_rugosa	Rorug01G0236000 Rorug02G0221700
rosa_samantha	Rh1BG320400 Rh1CG044300 Rh1CG334400 Rh1DG351000 Rh2AG096900 Rh2AG182700 Rh2BG335100 Rh2CG313300 Rh2CG351300 Rh2DG352700 Rh2DG390400 Rh3BG073400 Rh4CG209000 Rh5AG316800 Rh5AG511900 Rh6BG273400 Rh6BG434200 Rh6DG468100
rosa_wichuraiana	Rw2G026410 Rw4G021840 Rw6G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	33
AgsI	TTSAA	4 cut(s)	62, 218, 317, 404
AjiI	CACGTC	1 cut(s)	419
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
AluBI	AGCT	1 cut(s)	65
AluI	AGCT	1 cut(s)	65
Alw21I	GWGCWC	1 cut(s)	301
Alw26I	GTCTC	1 cut(s)	409
AlwI	GGATC	1 cut(s)	15
ApoI	RAATTY	1 cut(s)	33
AspS9I	GGNCC	2 cut(s)	112, 309
AsuHPI	GGTGA	1 cut(s)	218
AsuNHI	GCTAGC	1 cut(s)	65
AvaII	GGWCC	2 cut(s)	112, 309
BaeGI	GKGCMC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	301
BccI	CCATC	2 cut(s)	35, 391
BciVI	GTATCC	1 cut(s)	162
BclI	TGATCA	1 cut(s)	97
BcoDI	GTCTC	1 cut(s)	409
BfaI	CTAG	2 cut(s)	66, 131
BfuI	GTATCC	1 cut(s)	162
Bme18I	GGWCC	2 cut(s)	112, 309
BmgBI	CACGTC	1 cut(s)	419
BmgT120I	GGNCC	2 cut(s)	112, 309
BmiI	GGNNCC	1 cut(s)	311
BmsI	GCATC	2 cut(s)	174, 331
BmtI	GCTAGC	1 cut(s)	69
BplI	GAGNNNNNCTC	2 cut(s)	328, 360
Bsa29I	ATCGAT	1 cut(s)	168
BsaBI	GATNNNNATC	1 cut(s)	12
Bse1I	ACTGG	1 cut(s)	289
Bse8I	GATNNNNATC	1 cut(s)	12
BseCI	ATCGAT	1 cut(s)	168
BseGI	GGATG	1 cut(s)	346
BseJI	GATNNNNATC	1 cut(s)	12
BseNI	ACTGG	1 cut(s)	289
BseSI	GKGCMC	1 cut(s)	123
BshVI	ATCGAT	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	301
BslFI	GGGAC	1 cut(s)	295
BsmAI	GTCTC	1 cut(s)	409
BsmBI	CGTCTC	1 cut(s)	409
BsmFI	GGGAC	1 cut(s)	295
Bsp1286I	GDGCHC	2 cut(s)	123, 301
Bsp143I	GATC	4 cut(s)	7, 97, 169, 379
BspDI	ATCGAT	1 cut(s)	168
BspHI	TCATGA	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	311
BspOI	GCTAGC	1 cut(s)	69
BspPI	GGATC	1 cut(s)	15
BsrI	ACTGG	1 cut(s)	289
BssMI	GATC	4 cut(s)	7, 97, 169, 379
Bst4CI	ACNGT	1 cut(s)	334
Bst6I	CTCTTC	2 cut(s)	249, 399
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	1 cut(s)	252
BstF5I	GGATG	1 cut(s)	346
BstKTI	GATC	4 cut(s)	10, 100, 172, 382
BstMAI	GTCTC	1 cut(s)	409
BstMBI	GATC	4 cut(s)	7, 97, 169, 379
BstNSI	RCATGY	1 cut(s)	84
BstSLI	GKGCMC	1 cut(s)	123
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
Bsu15I	ATCGAT	1 cut(s)	168
BsuI	GTATCC	1 cut(s)	162
BsuTUI	ATCGAT	1 cut(s)	168
BtrI	CACGTC	1 cut(s)	419
BtsCI	GGATG	1 cut(s)	346
BtsIMutI	CAGTG	2 cut(s)	282, 339
Cac8I	GCNNGC	1 cut(s)	67
CciI	TCATGA	1 cut(s)	190
Cfr13I	GGNCC	2 cut(s)	112, 309
ClaI	ATCGAT	1 cut(s)	168
CviAII	CATG	3 cut(s)	81, 116, 191
CviJI	RGCY	2 cut(s)	65, 69
CviKI_1	RGCY	2 cut(s)	65, 69
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	4 cut(s)	9, 99, 171, 381
DpnII	GATC	4 cut(s)	7, 97, 169, 379
Eam1104I	CTCTTC	2 cut(s)	249, 399
EarI	CTCTTC	2 cut(s)	249, 399
Eco47I	GGWCC	2 cut(s)	112, 309
Esp3I	CGTCTC	1 cut(s)	409
FaeI	CATG	3 cut(s)	84, 119, 194
FaqI	GGGAC	1 cut(s)	295
FatI	CATG	3 cut(s)	80, 115, 190
FauNDI	CATATG	1 cut(s)	176
FbaI	TGATCA	1 cut(s)	97
FokI	GGATG	1 cut(s)	353
FspBI	CTAG	2 cut(s)	66, 131
Hin1II	CATG	3 cut(s)	84, 119, 194
HinfI	GANTC	1 cut(s)	209
HphI	GGTGA	1 cut(s)	218
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	3 cut(s)	201, 234, 249
Hpy188III	TCNNGA	2 cut(s)	191, 412
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	2 cut(s)	323, 367
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4IV	ACGT	1 cut(s)	418
HpyCH4V	TGCA	1 cut(s)	180
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	1 cut(s)	418
Hsp92II	CATG	3 cut(s)	84, 119, 194
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	4 cut(s)	7, 97, 169, 379
LpnPI	CCDG	4 cut(s)	150, 270, 292, 397
LweI	GCATC	2 cut(s)	174, 331
MaeI	CTAG	2 cut(s)	66, 131
MaeII	ACGT	1 cut(s)	418
MalI	GATC	4 cut(s)	9, 99, 171, 381
MboI	GATC	4 cut(s)	7, 97, 169, 379
MboII	GAAGA	3 cut(s)	231, 236, 416
MfeI	CAATTG	1 cut(s)	181
MflI	RGATCY	1 cut(s)	7
MhlI	GDGCHC	2 cut(s)	123, 301
MluCI	AATT	4 cut(s)	23, 33, 46, 181
MmeI	TCCRAC	1 cut(s)	272
MnlI	CCTC	4 cut(s)	49, 80, 330, 400
MseI	TTAA	1 cut(s)	146
MunI	CAATTG	1 cut(s)	181
NdeI	CATATG	1 cut(s)	176
NdeII	GATC	4 cut(s)	7, 97, 169, 379
NheI	GCTAGC	1 cut(s)	65
NlaIII	CATG	3 cut(s)	84, 119, 194
NlaIV	GGNNCC	1 cut(s)	311
NspI	RCATGY	1 cut(s)	84
PagI	TCATGA	1 cut(s)	190
PfeI	GAWTC	1 cut(s)	209
PspN4I	GGNNCC	1 cut(s)	311
PspPI	GGNCC	2 cut(s)	112, 309
PsuI	RGATCY	1 cut(s)	7
SaqAI	TTAA	1 cut(s)	146
Sau3AI	GATC	4 cut(s)	7, 97, 169, 379
Sau96I	GGNCC	2 cut(s)	112, 309
SduI	GDGCHC	2 cut(s)	123, 301
SetI	ASST	5 cut(s)	60, 67, 111, 411, 421
SfaNI	GCATC	2 cut(s)	174, 331
SinI	GGWCC	2 cut(s)	112, 309
Sse9I	AATT	4 cut(s)	23, 33, 46, 181
SspMI	CTAG	2 cut(s)	66, 131
TaaI	ACNGT	1 cut(s)	334
TaiI	ACGT	1 cut(s)	421
TaqI	TCGA	2 cut(s)	168, 360
TasI	AATT	4 cut(s)	23, 33, 46, 181
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TscAI	CASTG	2 cut(s)	289, 339
TspDTI	ATGAA	3 cut(s)	17, 179, 207
TspRI	CASTG	2 cut(s)	289, 339
VpaK11BI	GGWCC	2 cut(s)	112, 309
XapI	RAATTY	1 cut(s)	33
XceI	RCATGY	1 cut(s)	84
XspI	CTAG	2 cut(s)	66, 131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.