Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019512.1

Orthogroup ID

OG0002158

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 5123

Gene Structure 5123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019512.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

aaattgggatctctaaatttggggagagagctgcagcggtggtcgggttggtctcggacgcccaaaactagggctgagaagaccggaactgggccaaggacgaacctgagttccggccagtcgaagttgaactgcggcgaggaggggaaagaggttatcttttttgaacccatgacaccagcttcgggtcttttagggaatagtgaggtggctactgacctggtggttcggccaccgtgtgtggccaccgggtatcatattgtcatggctggaatgagtttcttccaaattgaagttcaatcccatcaccaatctctattttctcgaaagctcaaatcgatgaacatgaagaattgctgggtgggactgatggtggatttgaatgggaaaggaaattgtaggaggttgaatttgatgggagatgaaatcaaaatgtgctcagcgaagaacattgatcggctgggcgaagtgtcagaccgcaccattgttgctctagctcagaattgccccaacttggggatggttggtttaagtgactgtggaataactggagctggtattcgtgcattttcaggtcacgcttgcttacaaactattgtattgcgcttatgtgaagttggcgcatctgatttggaacacttggtgcttagctgccggtcattgaagtctattctggtgcaccataaaacgctaaagcagatattgcctctgatgcgaaagcggactaggaagatttgtgaaaagtgggttactggagaatatagtggaggatcaccgacattgggggtgtggcgctctcggctatttcaaccctcaagagtcaagaacttgagcttggaagagctgtccagaatgtcggaccgcaccattgttgctcttgctaagaattgccccgacttggaggtccttgacttaactggatgtggaataactccagctggtattcgtgcattttctagtcacaagtgtttctattgttctgcgcttttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

330

Amino Acids

36.18

Weight (kDa)

9.38

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002158)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g10710
rosa_chinensis	RchiOBHm_Chr1g0352931 RchiOBHm_Chr1g0379931 RchiOBHm_Chr2g0127521 RchiOBHm_Chr5g0077921 RchiOBHm_Chr6g0254011 RchiOBHm_Chr7g0224991
rosa_laevigata	RLG00000010747 RLG00000036727
rosa_multiflora	Rmu_co8264081.1_g000001 Rmu_co8475729.1_g000001 Rmu_sc0000512.1_g000010 Rmu_sc0002563.1_g000056 Rmu_sc0003651.1_g000010 Rmu_sc0008382.1_g000016 Rmu_sc0011010.1_g000011 Rmu_sc0014844.1_g000012 Rmu_sc0017063.1_g000001 Rmu_sc0019512.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012710 Rroxscaffold_7G00161280
rosa_rugosa	Rorug01G0236000 Rorug02G0221700
rosa_samantha	Rh1BG320400 Rh1CG044300 Rh1CG334400 Rh1DG351000 Rh2AG096900 Rh2AG182700 Rh2BG335100 Rh2CG313300 Rh2CG351300 Rh2DG352700 Rh2DG390400 Rh3BG073400 Rh4CG209000 Rh5AG316800 Rh5AG511900 Rh6BG273400 Rh6BG434200 Rh6DG468100
rosa_wichuraiana	Rw2G026410 Rw4G021840 Rw6G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	902
AciI	CCGC	5 cut(s)	37, 135, 478, 721, 862
AclWI	GGATC	2 cut(s)	16, 778
AcoI	YGGCCR	3 cut(s)	115, 230, 243
AcsI	RAATTY	2 cut(s)	16, 409
AcyI	GRCGYC	1 cut(s)	59
AdeI	CACNNNGTG	2 cut(s)	239, 643
AfiI	CCNNNNNNNGG	8 cut(s)	69, 90, 185, 514, 515, 516, 782, 898
AgsI	TTSAA	8 cut(s)	130, 167, 293, 299, 382, 409, 664, 809
AjnI	CCWGG	1 cut(s)	219
AjuI	GAANNNNNNNTTGG	4 cut(s)	279, 311, 818, 850
AloI	GAACNNNNNNTCC	2 cut(s)	95, 127
AluBI	AGCT	9 cut(s)	31, 182, 331, 497, 554, 651, 834, 844, 938
AluI	AGCT	9 cut(s)	31, 182, 331, 497, 554, 651, 834, 844, 938
Alw21I	GWGCWC	2 cut(s)	440, 681
Alw26I	GTCTC	1 cut(s)	57
Alw44I	GTGCAC	1 cut(s)	677
AlwI	GGATC	2 cut(s)	16, 778
AoxI	GGCC	4 cut(s)	92, 115, 230, 243
ApaLI	GTGCAC	1 cut(s)	677
ApeKI	GCWGC	3 cut(s)	31, 34, 651
ApoI	RAATTY	2 cut(s)	16, 409
ArsI	GACNNNNNNTTYG	2 cut(s)	166, 198
AspLEI	GCGC	4 cut(s)	606, 623, 795, 985
AspS9I	GGNCC	3 cut(s)	92, 859, 904
AsuC2I	CCSGG	1 cut(s)	250
AsuHPI	GGTGA	2 cut(s)	299, 765
AvaII	GGWCC	2 cut(s)	859, 904
BaeGI	GKGCMC	1 cut(s)	681
BalI	TGGCCA	1 cut(s)	245
BbsI	GAAGAC	1 cut(s)	86
Bbv12I	GWGCWC	2 cut(s)	440, 681
BbvI	GCAGC	3 cut(s)	18, 46, 638
BccI	CCATC	4 cut(s)	312, 364, 409, 514
BciT130I	CCWGG	1 cut(s)	221
BcnI	CCSGG	1 cut(s)	250
BcoDI	GTCTC	1 cut(s)	57
BfaI	CTAG	4 cut(s)	69, 494, 726, 957
BfmI	CTRYAG	1 cut(s)	32
BfoI	RGCGCY	1 cut(s)	796
BisI	GCNGC	4 cut(s)	32, 35, 136, 652
BlpI	GCTNAGC	2 cut(s)	439, 647
BlsI	GCNGC	4 cut(s)	33, 36, 137, 653
Bme1390I	CCNGG	2 cut(s)	221, 250
Bme18I	GGWCC	2 cut(s)	859, 904
BmgT120I	GGNCC	3 cut(s)	92, 859, 904
BmrFI	CCNGG	2 cut(s)	221, 250
BmrI	ACTGGG	1 cut(s)	99
BmsI	GCATC	2 cut(s)	632, 702
BmuI	ACTGGG	1 cut(s)	99
BpiI	GAAGAC	1 cut(s)	86
BpmI	CTGGAG	3 cut(s)	570, 774, 918
Bpu1102I	GCTNAGC	2 cut(s)	439, 647
BpuEI	CTTGAG	2 cut(s)	799, 850
BpuMI	CCSGG	1 cut(s)	250
Bsa29I	ATCGAT	1 cut(s)	338
BsaHI	GRCGYC	1 cut(s)	59
BsaI	GGTCTC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	95
BsaWI	WCCGGW	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	8 cut(s)	69, 90, 185, 514, 515, 516, 782, 898
Bse118I	RCCGGY	1 cut(s)	654
Bse1I	ACTGG	5 cut(s)	94, 118, 553, 757, 922
BseBI	CCWGG	1 cut(s)	221
BseCI	ATCGAT	1 cut(s)	338
BseDI	CCNNGG	1 cut(s)	95
BseGI	GGATG	2 cut(s)	525, 926
BseLI	CCNNNNNNNGG	8 cut(s)	69, 90, 185, 514, 515, 516, 782, 898
BseMII	CTCAG	4 cut(s)	66, 98, 453, 512
BseNI	ACTGG	5 cut(s)	94, 118, 553, 757, 922
BseRI	GAGGAG	1 cut(s)	155
BseSI	GKGCMC	1 cut(s)	681
BseXI	GCAGC	3 cut(s)	18, 46, 638
BseYI	CCCAGC	2 cut(s)	357, 460
BshFI	GGCC	4 cut(s)	94, 117, 232, 245
BshVI	ATCGAT	1 cut(s)	338
BsiHKAI	GWGCWC	2 cut(s)	440, 681
BsiSI	CCGG	4 cut(s)	84, 114, 249, 655
BslFI	GGGAC	1 cut(s)	378
BslI	CCNNNNNNNGG	8 cut(s)	69, 90, 185, 514, 515, 516, 782, 898
BsmAI	GTCTC	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	378
BsnI	GGCC	4 cut(s)	94, 117, 232, 245
Bso31I	GGTCTC	1 cut(s)	57
Bsp1286I	GDGCHC	2 cut(s)	440, 681
Bsp143I	GATC	3 cut(s)	8, 454, 770
Bsp1720I	GCTNAGC	2 cut(s)	439, 647
BspACI	CCGC	5 cut(s)	37, 135, 478, 721, 862
BspANI	GGCC	4 cut(s)	94, 117, 232, 245
BspCNI	CTCAG	4 cut(s)	67, 99, 452, 511
BspDI	ATCGAT	1 cut(s)	338
BspMAI	CTGCAG	1 cut(s)	36
BspPI	GGATC	2 cut(s)	16, 778
BspQI	GCTCTTC	1 cut(s)	834
BspTNI	GGTCTC	1 cut(s)	57
BsrFI	RCCGGY	1 cut(s)	654
BsrI	ACTGG	5 cut(s)	94, 118, 553, 757, 922
BssAI	RCCGGY	1 cut(s)	654
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	3 cut(s)	8, 454, 770
BssNI	GRCGYC	1 cut(s)	59
BssT1I	CCWWGG	1 cut(s)	95
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	2 cut(s)	237, 539
Bst6I	CTCTTC	1 cut(s)	834
BstACI	GRCGYC	1 cut(s)	59
BstAPI	GCANNNNNTGC	1 cut(s)	703
BstC8I	GCNNGC	1 cut(s)	583
BstDEI	CTNAG	6 cut(s)	75, 107, 439, 498, 647, 882
BstF5I	GGATG	2 cut(s)	525, 926
BstH2I	RGCGCY	1 cut(s)	796
BstHHI	GCGC	4 cut(s)	606, 623, 795, 985
BstKTI	GATC	3 cut(s)	11, 457, 773
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	3 cut(s)	8, 454, 770
BstMWI	GCNNNNNNNGC	3 cut(s)	703, 712, 799
BstNI	CCWGG	1 cut(s)	221
BstSCI	CCNGG	2 cut(s)	219, 248
BstSFI	CTRYAG	1 cut(s)	32
BstSLI	GKGCMC	1 cut(s)	681
BstV1I	GCAGC	3 cut(s)	18, 46, 638
BstV2I	GAAGAC	1 cut(s)	86
BstX2I	RGATCY	1 cut(s)	8
BstYI	RGATCY	1 cut(s)	8
Bsu15I	ATCGAT	1 cut(s)	338
BsuRI	GGCC	4 cut(s)	94, 117, 232, 245
BsuTUI	ATCGAT	1 cut(s)	338
BtsCI	GGATG	2 cut(s)	525, 926
Cac8I	GCNNGC	1 cut(s)	583
CfoI	GCGC	4 cut(s)	606, 623, 795, 985
Cfr10I	RCCGGY	1 cut(s)	654
Cfr13I	GGNCC	3 cut(s)	92, 859, 904
ClaI	ATCGAT	1 cut(s)	338
CpoI	CGGWCCG	1 cut(s)	859
CseI	GACGC	1 cut(s)	67
CsiI	ACCWGGT	1 cut(s)	219
CspI	CGGWCCG	1 cut(s)	859
CviAII	CATG	3 cut(s)	172, 265, 346
DdeI	CTNAG	6 cut(s)	75, 107, 439, 498, 647, 882
DpnI	GATC	3 cut(s)	10, 456, 772
DpnII	GATC	3 cut(s)	8, 454, 770
DraIII	CACNNNGTG	2 cut(s)	239, 643
DrdI	GACNNNNNNGTC	1 cut(s)	902
DseDI	GACNNNNNNGTC	1 cut(s)	902
EaeI	YGGCCR	3 cut(s)	115, 230, 243
Eam1104I	CTCTTC	1 cut(s)	834
EarI	CTCTTC	1 cut(s)	834
Eco130I	CCWWGG	1 cut(s)	95
Eco31I	GGTCTC	1 cut(s)	57
Eco47I	GGWCC	2 cut(s)	859, 904
EcoO109I	RGGNCCY	1 cut(s)	904
EcoRII	CCWGG	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	95
FaeI	CATG	3 cut(s)	175, 268, 349
FaiI	YATR	7 cut(s)	173, 258, 266, 347, 610, 684, 762
FaqI	GGGAC	1 cut(s)	378
FatI	CATG	3 cut(s)	171, 264, 345
Fnu4HI	GCNGC	4 cut(s)	32, 35, 136, 652
FokI	GGATG	2 cut(s)	532, 933
Fsp4HI	GCNGC	4 cut(s)	32, 35, 136, 652
FspBI	CTAG	4 cut(s)	69, 494, 726, 957
GlaI	GCGC	4 cut(s)	605, 622, 794, 984
GluI	GCNGC	4 cut(s)	32, 35, 136, 652
GsaI	CCCAGC	2 cut(s)	361, 464
GsuI	CTGGAG	3 cut(s)	570, 774, 918
HaeII	RGCGCY	1 cut(s)	796
HaeIII	GGCC	4 cut(s)	94, 117, 232, 245
HapII	CCGG	4 cut(s)	84, 114, 249, 655
HgaI	GACGC	1 cut(s)	67
HhaI	GCGC	4 cut(s)	606, 623, 795, 985
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	3 cut(s)	175, 268, 349
Hin6I	GCGC	4 cut(s)	604, 621, 793, 983
HinP1I	GCGC	4 cut(s)	604, 621, 793, 983
HinfI	GANTC	1 cut(s)	819
HpaII	CCGG	4 cut(s)	84, 114, 249, 655
HphI	GGTGA	2 cut(s)	299, 765
Hpy166II	GTNNAC	1 cut(s)	679
Hpy188I	TCNGA	6 cut(s)	57, 475, 501, 628, 711, 859
Hpy188III	TCNNGA	4 cut(s)	324, 816, 823, 849
Hpy8I	GTNNAC	1 cut(s)	679
HpyCH4III	ACNGT	2 cut(s)	237, 539
HpyCH4V	TGCA	4 cut(s)	34, 566, 679, 950
HpyF10VI	GCNNNNNNNGC	3 cut(s)	703, 712, 799
HpyF3I	CTNAG	6 cut(s)	75, 107, 439, 498, 647, 882
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	3 cut(s)	175, 268, 349
HspAI	GCGC	4 cut(s)	604, 621, 793, 983
Kzo9I	GATC	3 cut(s)	8, 454, 770
LguI	GCTCTTC	1 cut(s)	834
LmnI	GCTCC	1 cut(s)	551
Lsp1109I	GCAGC	3 cut(s)	18, 46, 638
LweI	GCATC	2 cut(s)	632, 702
MabI	ACCWGGT	1 cut(s)	219
MaeI	CTAG	4 cut(s)	69, 494, 726, 957
MaeIII	GTNAC	4 cut(s)	533, 575, 748, 959
MalI	GATC	3 cut(s)	10, 456, 772
MboI	GATC	3 cut(s)	8, 454, 770
MboII	GAAGA	6 cut(s)	91, 274, 361, 457, 742, 851
MflI	RGATCY	1 cut(s)	8
MhlI	GDGCHC	2 cut(s)	440, 681
MlsI	TGGCCA	1 cut(s)	245
MluCI	AATT	8 cut(s)	2, 16, 288, 352, 394, 409, 502, 886
MluNI	TGGCCA	1 cut(s)	245
MlyI	GAGTC	1 cut(s)	828
MmeI	TCCRAC	1 cut(s)	837
MnlI	CCTC	9 cut(s)	133, 136, 145, 199, 396, 717, 761, 823, 895
Mox20I	TGGCCA	1 cut(s)	245
MscI	TGGCCA	1 cut(s)	245
MseI	TTAA	2 cut(s)	530, 914
Msp20I	TGGCCA	1 cut(s)	245
MspA1I	CMGCKG	2 cut(s)	37, 938
MspI	CCGG	4 cut(s)	84, 114, 249, 655
MspR9I	CCNGG	2 cut(s)	221, 250
MvaI	CCWGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	3 cut(s)	703, 712, 799
NciI	CCSGG	1 cut(s)	250
NdeII	GATC	3 cut(s)	8, 454, 770
NlaIII	CATG	3 cut(s)	175, 268, 349
NmeAIII	GCCGAG	1 cut(s)	778
NmuCI	GTSAC	3 cut(s)	533, 575, 959
PciSI	GCTCTTC	1 cut(s)	834
PkrI	GCNGC	4 cut(s)	33, 36, 137, 653
PleI	GAGTC	1 cut(s)	827
PpsI	GAGTC	1 cut(s)	827
PpuMI	RGGWCCY	1 cut(s)	904
Psp5II	RGGWCCY	1 cut(s)	904
Psp6I	CCWGG	1 cut(s)	219
PspFI	CCCAGC	2 cut(s)	357, 460
PspGI	CCWGG	1 cut(s)	219
PspPI	GGNCC	3 cut(s)	92, 859, 904
PspPPI	RGGWCCY	1 cut(s)	904
PstI	CTGCAG	1 cut(s)	36
PsuI	RGATCY	1 cut(s)	8
PvuII	CAGCTG	1 cut(s)	938
Rsr2I	CGGWCCG	1 cut(s)	859
RsrII	CGGWCCG	1 cut(s)	859
SapI	GCTCTTC	1 cut(s)	834
SaqAI	TTAA	2 cut(s)	530, 914
SatI	GCNGC	4 cut(s)	32, 35, 136, 652
Sau3AI	GATC	3 cut(s)	8, 454, 770
Sau96I	GGNCC	3 cut(s)	92, 859, 904
SchI	GAGTC	1 cut(s)	828
ScrFI	CCNGG	2 cut(s)	221, 250
SduI	GDGCHC	2 cut(s)	440, 681
SexAI	ACCWGGT	1 cut(s)	219
SfaNI	GCATC	2 cut(s)	632, 702
SfcI	CTRYAG	1 cut(s)	32
SinI	GGWCC	2 cut(s)	859, 904
SmlI	CTYRAG	2 cut(s)	814, 829
SmoI	CTYRAG	2 cut(s)	814, 829
Sse9I	AATT	8 cut(s)	2, 16, 288, 352, 394, 409, 502, 886
SsiI	CCGC	5 cut(s)	37, 135, 478, 721, 862
SspMI	CTAG	4 cut(s)	69, 494, 726, 957
StyD4I	CCNGG	2 cut(s)	219, 248
StyI	CCWWGG	1 cut(s)	95
TaaI	ACNGT	2 cut(s)	237, 539
TaqI	TCGA	3 cut(s)	122, 325, 338
TasI	AATT	8 cut(s)	2, 16, 288, 352, 394, 409, 502, 886
TauI	GCSGC	1 cut(s)	138
Tru1I	TTAA	2 cut(s)	530, 914
Tru9I	TTAA	2 cut(s)	530, 914
TseFI	GTSAC	3 cut(s)	533, 575, 959
TseI	GCWGC	3 cut(s)	31, 34, 651
Tsp45I	GTSAC	3 cut(s)	533, 575, 959
TspDTI	ATGAA	3 cut(s)	356, 362, 438
VneI	GTGCAC	1 cut(s)	677
VpaK11BI	GGWCC	2 cut(s)	859, 904
XapI	RAATTY	2 cut(s)	16, 409
XcmI	CCANNNNNNNNNTGG	1 cut(s)	517
XspI	CTAG	4 cut(s)	69, 494, 726, 957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.