Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002563.1

Orthogroup ID

OG0002158

Physical Location & Seq

Genomic Coordinates Forward (+)

214751 .. 215799

Gene Structure 1049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002563.1_g000056.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atggaggagatagagtgccctagatccactttctctctcctcctcgccttcaaactagggtcaattgaagagatgcaaaagacgaagctgtccgagacagtagaggcgacggcggaggcgaacgcactgtgctttgatgtccttaacctcttcactctcgaccgccgccaccacctcggcacaaagctccaaaacaaaccacctccagtccccaaagtcaccctagacttccccttcacagtattagaattccttcactctctctctctcccctccaccgccatagcttctgcttctcccactaagaaggttctggttccgattgcgaatggcatggagctgatggaggcggcgatcgccgtcgatgttctgcgccgagccggagctgatgtcaatgtggtggcgatcgccgtcgatgttctgtgccgagccggagctgatgtcactgtggcttctgtggagaagcagctgagggttgaggcttgtcatggggttgagatcatcgctgatgctttggtttcgcactatggccagagcttcttcgatctcattactctacctgtgagtactcagtccctctatatatgtgtcctgaatcgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0006081 GO:0006082 GO:0006089 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009438 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019172 GO:0019249 GO:0019752 GO:0030054 GO:0031090 GO:0032787 GO:0042180 GO:0042182 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046185 GO:0046394 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051596 GO:0055044 GO:0061727 GO:0065007 GO:0071704 GO:0071944 GO:0072330 GO:0080134 GO:0080135 GO:0098588 GO:0098805 GO:1900407 GO:1900409 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902882 GO:1902884

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

200

Amino Acids

21.69

Weight (kDa)

5.36

Isoelectric Point (pI)

51.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002158)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g10710
rosa_chinensis	RchiOBHm_Chr1g0352931 RchiOBHm_Chr1g0379931 RchiOBHm_Chr2g0127521 RchiOBHm_Chr5g0077921 RchiOBHm_Chr6g0254011 RchiOBHm_Chr7g0224991
rosa_laevigata	RLG00000010747 RLG00000036727
rosa_multiflora	Rmu_co8264081.1_g000001 Rmu_co8475729.1_g000001 Rmu_sc0000512.1_g000010 Rmu_sc0002563.1_g000056 Rmu_sc0003651.1_g000010 Rmu_sc0008382.1_g000016 Rmu_sc0011010.1_g000011 Rmu_sc0014844.1_g000012 Rmu_sc0017063.1_g000001 Rmu_sc0019512.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012710 Rroxscaffold_7G00161280
rosa_rugosa	Rorug01G0236000 Rorug02G0221700
rosa_samantha	Rh1BG320400 Rh1CG044300 Rh1CG334400 Rh1DG351000 Rh2AG096900 Rh2AG182700 Rh2BG335100 Rh2CG313300 Rh2CG351300 Rh2DG352700 Rh2DG390400 Rh3BG073400 Rh4CG209000 Rh5AG316800 Rh5AG511900 Rh6BG273400 Rh6BG434200 Rh6DG468100
rosa_wichuraiana	Rw2G026410 Rw4G021840 Rw6G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	88
AciI	CCGC	5 cut(s)	113, 163, 166, 279, 350
AclWI	GGATC	1 cut(s)	18
AcoI	YGGCCR	1 cut(s)	529
AcsI	RAATTY	1 cut(s)	248
AfaI	GTAC	1 cut(s)	568
AgsI	TTSAA	2 cut(s)	52, 68
AluBI	AGCT	8 cut(s)	88, 187, 287, 340, 386, 437, 469, 537
AluI	AGCT	8 cut(s)	88, 187, 287, 340, 386, 437, 469, 537
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	1 cut(s)	18
AoxI	GGCC	1 cut(s)	529
ApeKI	GCWGC	1 cut(s)	466
ApoI	RAATTY	1 cut(s)	248
AsiSI	GCGATCGC	2 cut(s)	357, 408
Asp700I	GAANNNNTTC	1 cut(s)	252
AspLEI	GCGC	1 cut(s)	375
AsuHPI	GGTGA	1 cut(s)	211
BaeGI	GKGCMC	1 cut(s)	20
BalI	TGGCCA	1 cut(s)	531
BbvCI	CCTCAGC	1 cut(s)	470
BbvI	GCAGC	1 cut(s)	478
BccI	CCATC	1 cut(s)	337
BceAI	ACGGC	3 cut(s)	126, 344, 395
BcoDI	GTCTC	1 cut(s)	89
BfaI	CTAG	3 cut(s)	21, 56, 224
BisI	GCNGC	3 cut(s)	166, 351, 467
BlsI	GCNGC	3 cut(s)	167, 352, 468
BmcAI	AGTACT	1 cut(s)	568
BmiI	GGNNCC	1 cut(s)	318
BmsI	GCATC	2 cut(s)	63, 499
BpmI	CTGGAG	1 cut(s)	189
Bpu10I	CCTNAGC	1 cut(s)	470
Bsa29I	ATCGAT	1 cut(s)	598
BsaJI	CCNNGG	1 cut(s)	175
BsaXI	ACNNNNNCTCC	5 cut(s)	29, 375, 405, 426, 456
Bse1I	ACTGG	1 cut(s)	206
BseCI	ATCGAT	1 cut(s)	598
BseDI	CCNNGG	1 cut(s)	175
BseMII	CTCAG	2 cut(s)	461, 584
BseNI	ACTGG	1 cut(s)	206
BseRI	GAGGAG	3 cut(s)	20, 29, 32
BseSI	GKGCMC	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	478
Bsh1285I	CGRYCG	3 cut(s)	163, 357, 408
BshFI	GGCC	1 cut(s)	531
BshVI	ATCGAT	1 cut(s)	598
BsiEI	CGRYCG	3 cut(s)	163, 357, 408
BsiSI	CCGG	2 cut(s)	381, 432
BslFI	GGGAC	2 cut(s)	194, 559
BsmAI	GTCTC	1 cut(s)	89
BsmFI	GGGAC	2 cut(s)	194, 559
BsnI	GGCC	1 cut(s)	531
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	5 cut(s)	23, 354, 405, 498, 544
BspACI	CCGC	5 cut(s)	113, 163, 166, 279, 350
BspANI	GGCC	1 cut(s)	531
BspCNI	CTCAG	2 cut(s)	462, 583
BspDI	ATCGAT	1 cut(s)	598
BspLI	GGNNCC	1 cut(s)	318
BspPI	GGATC	1 cut(s)	18
BsrI	ACTGG	1 cut(s)	206
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	5 cut(s)	23, 354, 405, 498, 544
Bst4CI	ACNGT	4 cut(s)	100, 129, 241, 448
Bst6I	CTCTTC	2 cut(s)	63, 155
BstDEI	CTNAG	3 cut(s)	303, 470, 570
BstHHI	GCGC	1 cut(s)	375
BstKTI	GATC	5 cut(s)	26, 357, 408, 501, 547
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	5 cut(s)	23, 354, 405, 498, 544
BstMCI	CGRYCG	3 cut(s)	163, 357, 408
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstSLI	GKGCMC	1 cut(s)	20
BstV1I	GCAGC	1 cut(s)	478
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
Bsu15I	ATCGAT	1 cut(s)	598
BsuRI	GGCC	1 cut(s)	531
BsuTUI	ATCGAT	1 cut(s)	598
BtgZI	GCGATG	1 cut(s)	487
BtsIMutI	CAGTG	2 cut(s)	125, 444
CfoI	GCGC	1 cut(s)	375
ClaI	ATCGAT	1 cut(s)	598
Csp6I	GTAC	1 cut(s)	567
CviAII	CATG	2 cut(s)	334, 488
CviQI	GTAC	1 cut(s)	567
DdeI	CTNAG	3 cut(s)	303, 470, 570
DpnI	GATC	5 cut(s)	25, 356, 407, 500, 546
DpnII	GATC	5 cut(s)	23, 354, 405, 498, 544
DrdI	GACNNNNNNGTC	1 cut(s)	88
DseDI	GACNNNNNNGTC	1 cut(s)	88
EaeI	YGGCCR	1 cut(s)	529
Eam1104I	CTCTTC	2 cut(s)	63, 155
EarI	CTCTTC	2 cut(s)	63, 155
EciI	GGCGGA	1 cut(s)	128
EcoRI	GAATTC	1 cut(s)	248
FaeI	CATG	2 cut(s)	337, 491
FaiI	YATR	7 cut(s)	284, 335, 489, 528, 582, 584, 586
FaqI	GGGAC	2 cut(s)	194, 559
FatI	CATG	2 cut(s)	333, 487
Fnu4HI	GCNGC	3 cut(s)	166, 351, 467
Fsp4HI	GCNGC	3 cut(s)	166, 351, 467
FspBI	CTAG	3 cut(s)	21, 56, 224
GlaI	GCGC	1 cut(s)	374
GluI	GCNGC	3 cut(s)	166, 351, 467
GsuI	CTGGAG	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	531
HapII	CCGG	2 cut(s)	381, 432
HhaI	GCGC	1 cut(s)	375
Hin1II	CATG	2 cut(s)	337, 491
Hin6I	GCGC	1 cut(s)	373
HinP1I	GCGC	1 cut(s)	373
HinfI	GANTC	1 cut(s)	595
HpaII	CCGG	2 cut(s)	381, 432
HphI	GGTGA	1 cut(s)	211
Hpy188I	TCNGA	2 cut(s)	94, 321
Hpy188III	TCNNGA	2 cut(s)	158, 592
Hpy99I	CGWCG	3 cut(s)	112, 365, 416
HpyAV	CCTTC	4 cut(s)	58, 244, 263, 301
HpyCH4III	ACNGT	4 cut(s)	100, 129, 241, 448
HpyCH4V	TGCA	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpyF3I	CTNAG	3 cut(s)	303, 470, 570
Hsp92II	CATG	2 cut(s)	337, 491
HspAI	GCGC	1 cut(s)	373
Kzo9I	GATC	5 cut(s)	23, 354, 405, 498, 544
LmnI	GCTCC	4 cut(s)	192, 337, 383, 434
LpnPI	CCDG	6 cut(s)	219, 299, 394, 445, 545, 573
Lsp1109I	GCAGC	1 cut(s)	478
LweI	GCATC	2 cut(s)	63, 499
MaeI	CTAG	3 cut(s)	21, 56, 224
MaeIII	GTNAC	2 cut(s)	217, 442
MalI	GATC	5 cut(s)	25, 356, 407, 500, 546
MboI	GATC	5 cut(s)	23, 354, 405, 498, 544
MboII	GAAGA	3 cut(s)	80, 142, 532
MfeI	CAATTG	1 cut(s)	63
MflI	RGATCY	1 cut(s)	23
MhlI	GDGCHC	1 cut(s)	20
MlsI	TGGCCA	1 cut(s)	531
MluCI	AATT	2 cut(s)	63, 248
MluNI	TGGCCA	1 cut(s)	531
Mox20I	TGGCCA	1 cut(s)	531
MroXI	GAANNNNTTC	1 cut(s)	252
MscI	TGGCCA	1 cut(s)	531
MseI	TTAA	1 cut(s)	144
Msp20I	TGGCCA	1 cut(s)	531
MspA1I	CMGCKG	1 cut(s)	469
MspI	CCGG	2 cut(s)	381, 432
MunI	CAATTG	1 cut(s)	63
MwoI	GCNNNNNNNGC	1 cut(s)	356
NdeII	GATC	5 cut(s)	23, 354, 405, 498, 544
NlaIII	CATG	2 cut(s)	337, 491
NlaIV	GGNNCC	1 cut(s)	318
NmeAIII	GCCGAG	3 cut(s)	156, 401, 452
NmuCI	GTSAC	2 cut(s)	217, 442
PcsI	WCGNNNNNNNCGW	1 cut(s)	116
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	595
PkrI	GCNGC	3 cut(s)	167, 352, 468
Ple19I	CGATCG	2 cut(s)	357, 408
PspN4I	GGNNCC	1 cut(s)	318
PsuI	RGATCY	1 cut(s)	23
PvuI	CGATCG	2 cut(s)	357, 408
PvuII	CAGCTG	1 cut(s)	469
RgaI	GCGATCGC	2 cut(s)	357, 408
RsaI	GTAC	1 cut(s)	568
RsaNI	GTAC	1 cut(s)	567
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	3 cut(s)	166, 351, 467
Sau3AI	GATC	5 cut(s)	23, 354, 405, 498, 544
ScaI	AGTACT	1 cut(s)	568
SduI	GDGCHC	1 cut(s)	20
SfaAI	GCGATCGC	2 cut(s)	357, 408
SfaNI	GCATC	2 cut(s)	63, 499
SgfI	GCGATCGC	2 cut(s)	357, 408
Sse9I	AATT	2 cut(s)	63, 248
SsiI	CCGC	5 cut(s)	113, 163, 166, 279, 350
SspMI	CTAG	3 cut(s)	21, 56, 224
TaaI	ACNGT	4 cut(s)	100, 129, 241, 448
TaqI	TCGA	5 cut(s)	159, 363, 414, 543, 598
TasI	AATT	2 cut(s)	63, 248
TatI	WGTACW	1 cut(s)	566
TauI	GCSGC	2 cut(s)	168, 353
TfiI	GAWTC	1 cut(s)	595
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TscAI	CASTG	2 cut(s)	132, 451
TseFI	GTSAC	2 cut(s)	217, 442
TseI	GCWGC	1 cut(s)	466
Tsp45I	GTSAC	2 cut(s)	217, 442
TspRI	CASTG	2 cut(s)	132, 451
XapI	RAATTY	1 cut(s)	248
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	3 cut(s)	21, 56, 224
ZrmI	AGTACT	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.