Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002158

Physical Location & Seq

Genomic Coordinates Reverse (-)

46029269 .. 46032978

Gene Structure 3710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G023490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCTTCTTCTCTTAAATCTGTGACTGGTTTTCTTCAGCTGAAGAAGCCTCAAAGCCCATTGCTTTTCCGTTCTCCAGCTCAAAAGTCCACCCTTTCATTCAATAAATTTACTCCAATGGCTTCTCTGACCACCACCAACACCAGCGTTGGCCTCTCCAAAACTTTCATCAAACTGAAGGAGCAAGGCAAGGCTGCAGCCACTCGTGCCTTGGCAAGAGGGACCAATTTGAATACAATCCTGGCAATGTTGAAGGAGGAGTTAAAGTATCCACCAATAAGCATCGATCTCATCTGCAATTGCGTTCATGAAACTCCGATTGGTAATTCTGTTCAACCAGATATGGTTCAGATTTCTTCTCTTCCGACTAAGCAAATAGCAGATTTCACTATGGTTTTTACTGGTTTTGCTTGTGCTGTATGCTGGGTAATAGTTGGTCTTAAAAATCTAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

151

Amino Acids

16.35

Weight (kDa)

9.7

Isoelectric Point (pI)

31.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002158)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g10710
rosa_chinensis	RchiOBHm_Chr1g0352931 RchiOBHm_Chr1g0379931 RchiOBHm_Chr2g0127521 RchiOBHm_Chr5g0077921 RchiOBHm_Chr6g0254011 RchiOBHm_Chr7g0224991
rosa_laevigata	RLG00000010747 RLG00000036727
rosa_multiflora	Rmu_co8264081.1_g000001 Rmu_co8475729.1_g000001 Rmu_sc0000512.1_g000010 Rmu_sc0002563.1_g000056 Rmu_sc0003651.1_g000010 Rmu_sc0008382.1_g000016 Rmu_sc0011010.1_g000011 Rmu_sc0014844.1_g000012 Rmu_sc0017063.1_g000001 Rmu_sc0019512.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012710 Rroxscaffold_7G00161280
rosa_rugosa	Rorug01G0236000 Rorug02G0221700
rosa_samantha	Rh1BG320400 Rh1CG044300 Rh1CG334400 Rh1DG351000 Rh2AG096900 Rh2AG182700 Rh2BG335100 Rh2CG313300 Rh2CG351300 Rh2DG352700 Rh2DG390400 Rh3BG073400 Rh4CG209000 Rh5AG316800 Rh5AG511900 Rh6BG273400 Rh6BG434200 Rh6DG468100
rosa_wichuraiana	Rw2G026410 Rw4G021840 Rw6G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	107
AcuI	CTGAAG	3 cut(s)	20, 62, 197
AgsI	TTSAA	4 cut(s)	103, 232, 253, 335
AjnI	CCWGG	1 cut(s)	240
AjuI	GAANNNNNNNTTGG	2 cut(s)	303, 335
AluBI	AGCT	2 cut(s)	40, 80
AluI	AGCT	2 cut(s)	40, 80
AoxI	GGCC	1 cut(s)	151
ApeKI	GCWGC	2 cut(s)	194, 197
ApoI	RAATTY	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	222
AvaII	GGWCC	1 cut(s)	222
BauI	CACGAG	1 cut(s)	204
BbvI	GCAGC	2 cut(s)	181, 209
BciT130I	CCWGG	1 cut(s)	242
BciVI	GTATCC	1 cut(s)	279
BfaI	CTAG	1 cut(s)	449
BfmI	CTRYAG	1 cut(s)	195
BfuI	GTATCC	1 cut(s)	279
BisI	GCNGC	2 cut(s)	195, 198
BlsI	GCNGC	2 cut(s)	196, 199
Bme1390I	CCNGG	1 cut(s)	242
Bme18I	GGWCC	1 cut(s)	222
BmgT120I	GGNCC	1 cut(s)	222
BmiI	GGNNCC	1 cut(s)	223
BmrFI	CCNGG	1 cut(s)	242
BmsI	GCATC	1 cut(s)	291
BpmI	CTGGAG	1 cut(s)	60
Bsa29I	ATCGAT	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	210
BsaXI	ACNNNNNCTCC	2 cut(s)	251, 281
Bse1I	ACTGG	2 cut(s)	31, 406
Bse3DI	GCAATG	2 cut(s)	59, 252
BseBI	CCWGG	1 cut(s)	242
BseCI	ATCGAT	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	210
BseMI	GCAATG	2 cut(s)	59, 252
BseNI	ACTGG	2 cut(s)	31, 406
BseRI	GAGGAG	1 cut(s)	272
BseXI	GCAGC	2 cut(s)	181, 209
BseYI	CCCAGC	1 cut(s)	423
BshFI	GGCC	1 cut(s)	153
BshVI	ATCGAT	1 cut(s)	285
BslFI	GGGAC	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	235
BsnI	GGCC	1 cut(s)	153
Bsp143I	GATC	1 cut(s)	286
BspANI	GGCC	1 cut(s)	153
BspDI	ATCGAT	1 cut(s)	285
BspHI	TCATGA	1 cut(s)	307
BspLI	GGNNCC	1 cut(s)	223
BspMAI	CTGCAG	1 cut(s)	199
BsrDI	GCAATG	2 cut(s)	59, 252
BsrI	ACTGG	2 cut(s)	31, 406
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	1 cut(s)	286
BssSI	CACGAG	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	242
Bst6I	CTCTTC	1 cut(s)	366
BstDEI	CTNAG	1 cut(s)	369
BstKTI	GATC	1 cut(s)	289
BstMBI	GATC	1 cut(s)	286
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 206
BstNI	CCWGG	1 cut(s)	242
BstSCI	CCNGG	1 cut(s)	240
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	2 cut(s)	181, 209
Bsu15I	ATCGAT	1 cut(s)	285
BsuI	GTATCC	1 cut(s)	279
BsuRI	GGCC	1 cut(s)	153
BsuTUI	ATCGAT	1 cut(s)	285
CciI	TCATGA	1 cut(s)	307
Cfr13I	GGNCC	1 cut(s)	222
ClaI	ATCGAT	1 cut(s)	285
CviAII	CATG	1 cut(s)	308
CviJI	RGCY	9 cut(s)	5, 40, 49, 57, 80, 122, 153, 194, 200
CviKI_1	RGCY	9 cut(s)	5, 40, 49, 57, 80, 122, 153, 194, 200
DdeI	CTNAG	1 cut(s)	369
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Eco130I	CCWWGG	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	222
Eco57I	CTGAAG	3 cut(s)	20, 62, 197
EcoRII	CCWGG	1 cut(s)	240
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	1 cut(s)	311
FaiI	YATR	4 cut(s)	309, 344, 392, 421
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	1 cut(s)	307
Fnu4HI	GCNGC	2 cut(s)	195, 198
Fsp4HI	GCNGC	2 cut(s)	195, 198
FspBI	CTAG	1 cut(s)	449
GluI	GCNGC	2 cut(s)	195, 198
GsaI	CCCAGC	1 cut(s)	427
GsuI	CTGGAG	1 cut(s)	60
HaeIII	GGCC	1 cut(s)	153
Hin1II	CATG	1 cut(s)	311
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188I	TCNGA	4 cut(s)	129, 318, 351, 366
Hpy188III	TCNNGA	1 cut(s)	308
Hpy8I	GTNNAC	1 cut(s)	90
HpyAV	CCTTC	2 cut(s)	172, 247
HpyCH4V	TGCA	2 cut(s)	197, 297
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 206
HpyF3I	CTNAG	1 cut(s)	369
Hsp92II	CATG	1 cut(s)	311
Kzo9I	GATC	1 cut(s)	286
LmnI	GCTCC	1 cut(s)	181
LpnPI	CCDG	8 cut(s)	12, 90, 157, 227, 254, 351, 387, 409
Lsp1109I	GCAGC	2 cut(s)	181, 209
LweI	GCATC	1 cut(s)	291
MaeI	CTAG	1 cut(s)	449
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	4 cut(s)	26, 55, 348, 353
MfeI	CAATTG	1 cut(s)	298
MluCI	AATT	4 cut(s)	107, 226, 298, 325
MmeI	TCCRAC	1 cut(s)	389
MnlI	CCTC	4 cut(s)	60, 164, 212, 250
MseI	TTAA	3 cut(s)	15, 263, 441
MspA1I	CMGCKG	1 cut(s)	40
MspR9I	CCNGG	1 cut(s)	242
MunI	CAATTG	1 cut(s)	298
MvaI	CCWGG	1 cut(s)	242
MwoI	GCNNNNNNNGC	2 cut(s)	46, 206
NdeII	GATC	1 cut(s)	286
NlaIII	CATG	1 cut(s)	311
NlaIV	GGNNCC	1 cut(s)	223
NmuCI	GTSAC	1 cut(s)	22
PagI	TCATGA	1 cut(s)	307
PkrI	GCNGC	2 cut(s)	196, 199
Psp6I	CCWGG	1 cut(s)	240
PspFI	CCCAGC	1 cut(s)	423
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	1 cut(s)	222
PstI	CTGCAG	1 cut(s)	199
PvuII	CAGCTG	1 cut(s)	40
SaqAI	TTAA	3 cut(s)	15, 263, 441
SatI	GCNGC	2 cut(s)	195, 198
Sau3AI	GATC	1 cut(s)	286
Sau96I	GGNCC	1 cut(s)	222
ScrFI	CCNGG	1 cut(s)	242
SetI	ASST	2 cut(s)	42, 82
SfaNI	GCATC	1 cut(s)	291
SfcI	CTRYAG	1 cut(s)	195
SinI	GGWCC	1 cut(s)	222
Sse9I	AATT	4 cut(s)	107, 226, 298, 325
SspMI	CTAG	1 cut(s)	449
StyD4I	CCNGG	1 cut(s)	240
StyI	CCWWGG	1 cut(s)	210
TaqI	TCGA	1 cut(s)	285
TasI	AATT	4 cut(s)	107, 226, 298, 325
Tru1I	TTAA	3 cut(s)	15, 263, 441
Tru9I	TTAA	3 cut(s)	15, 263, 441
TseFI	GTSAC	1 cut(s)	22
TseI	GCWGC	2 cut(s)	194, 197
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	4 cut(s)	87, 157, 296, 324
TspGWI	ACGGA	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	222
XapI	RAATTY	1 cut(s)	107
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208
XspI	CTAG	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.