Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002158

Physical Location & Seq

Genomic Coordinates Forward (+)

57561615 .. 57570213

Gene Structure 8599 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG351000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCTGAAACAGTAGAGAATTACCAGAGAATGGAAGAGAACGATACTGGAGATGGCCAAGAAAGAGCGGATCATGAAGTAGCCGATGATTTTGAGGCCGGAGCGTTGCCGGAAAAGAATTCCTTCACTCTCTCTCTCCCCTCCACCGCCATAGCTTCTGCTTCTCCCACCAAGAAGGTTCTGGTTCCGATTGCGAATGGCATGGAGCTGATGGAGGCGGCGATCGCCGTCGATGTTCTGCGCCGAGCCGGAGCTGATGTCACTGTGGCTTCTGTGGAGAAGCAGCTGAGGGTTGAGGCTTGTCATGGGGTTGAGATCATCGCTGATGCTTTGGTTTCGCACTATGGCCAGAGCTTCTTCAAGCTCATTACTCTACCTGGAAGGGATGCCAGGTGCTACCAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0006081 GO:0006082 GO:0006089 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009438 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019172 GO:0019249 GO:0019752 GO:0030054 GO:0031090 GO:0032787 GO:0042180 GO:0042182 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046185 GO:0046394 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051596 GO:0055044 GO:0061727 GO:0065007 GO:0071704 GO:0071944 GO:0072330 GO:0080134 GO:0080135 GO:0098588 GO:0098805 GO:1900407 GO:1900409 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902882 GO:1902884

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

135

Amino Acids

14.57

Weight (kDa)

4.63

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DJ-1_PfpI	PF01965	58 - 128	8.1e-11	DJ-1/PfpI family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002158)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g10710
rosa_chinensis	RchiOBHm_Chr1g0352931 RchiOBHm_Chr1g0379931 RchiOBHm_Chr2g0127521 RchiOBHm_Chr5g0077921 RchiOBHm_Chr6g0254011 RchiOBHm_Chr7g0224991
rosa_laevigata	RLG00000010747 RLG00000036727
rosa_multiflora	Rmu_co8264081.1_g000001 Rmu_co8475729.1_g000001 Rmu_sc0000512.1_g000010 Rmu_sc0002563.1_g000056 Rmu_sc0003651.1_g000010 Rmu_sc0008382.1_g000016 Rmu_sc0011010.1_g000011 Rmu_sc0014844.1_g000012 Rmu_sc0017063.1_g000001 Rmu_sc0019512.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012710 Rroxscaffold_7G00161280
rosa_rugosa	Rorug01G0236000 Rorug02G0221700
rosa_samantha	Rh1BG320400 Rh1CG044300 Rh1CG334400 Rh1DG351000 Rh2AG096900 Rh2AG182700 Rh2BG335100 Rh2CG313300 Rh2CG351300 Rh2DG352700 Rh2DG390400 Rh3BG073400 Rh4CG209000 Rh5AG316800 Rh5AG511900 Rh6BG273400 Rh6BG434200 Rh6DG468100
rosa_wichuraiana	Rw2G026410 Rw4G021840 Rw6G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	31
AccBSI	CCGCTC	1 cut(s)	68
AciI	CCGC	3 cut(s)	68, 147, 218
AclWI	GGATC	1 cut(s)	78
AcoI	YGGCCR	2 cut(s)	55, 346
AcsI	RAATTY	1 cut(s)	118
AfiI	CCNNNNNNNGG	1 cut(s)	31
AgsI	TTSAA	1 cut(s)	361
AjnI	CCWGG	2 cut(s)	376, 389
AluBI	AGCT	6 cut(s)	155, 208, 254, 286, 354, 364
AluI	AGCT	6 cut(s)	155, 208, 254, 286, 354, 364
AlwI	GGATC	1 cut(s)	78
AoxI	GGCC	3 cut(s)	55, 96, 346
ApeKI	GCWGC	1 cut(s)	283
ApoI	RAATTY	1 cut(s)	118
AsiSI	GCGATCGC	1 cut(s)	225
Asp700I	GAANNNNTTC	1 cut(s)	122
AspLEI	GCGC	1 cut(s)	243
BalI	TGGCCA	2 cut(s)	57, 348
BbvCI	CCTCAGC	1 cut(s)	287
BbvI	GCAGC	1 cut(s)	295
BccI	CCATC	2 cut(s)	47, 205
BceAI	ACGGC	1 cut(s)	212
BciT130I	CCWGG	2 cut(s)	378, 391
BisI	GCNGC	2 cut(s)	219, 284
BlsI	GCNGC	2 cut(s)	220, 285
Bme1390I	CCNGG	2 cut(s)	378, 391
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	2 cut(s)	378, 391
BmsI	GCATC	2 cut(s)	316, 376
BpmI	CTGGAG	1 cut(s)	69
Bpu10I	CCTNAGC	1 cut(s)	287
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	52
BseBI	CCWGG	2 cut(s)	378, 391
BseGI	GGATG	1 cut(s)	391
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMII	CTCAG	1 cut(s)	278
BseNI	ACTGG	1 cut(s)	52
BseXI	GCAGC	1 cut(s)	295
Bsh1285I	CGRYCG	1 cut(s)	225
BshFI	GGCC	3 cut(s)	57, 98, 348
BsiEI	CGRYCG	1 cut(s)	225
BsiSI	CCGG	3 cut(s)	99, 110, 249
BslI	CCNNNNNNNGG	1 cut(s)	31
BsnI	GGCC	3 cut(s)	57, 98, 348
Bsp143I	GATC	3 cut(s)	70, 222, 315
BspACI	CCGC	3 cut(s)	68, 147, 218
BspANI	GGCC	3 cut(s)	57, 98, 348
BspCNI	CTCAG	1 cut(s)	279
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	186
BspPI	GGATC	1 cut(s)	78
BsrBI	CCGCTC	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	52
BssMI	GATC	3 cut(s)	70, 222, 315
Bst2UI	CCWGG	2 cut(s)	378, 391
Bst4CI	ACNGT	2 cut(s)	13, 265
Bst6I	CTCTTC	1 cut(s)	30
BstDEI	CTNAG	1 cut(s)	287
BstF5I	GGATG	1 cut(s)	391
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	3 cut(s)	73, 225, 318
BstMBI	GATC	3 cut(s)	70, 222, 315
BstMCI	CGRYCG	1 cut(s)	225
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNI	CCWGG	2 cut(s)	378, 391
BstSCI	CCNGG	2 cut(s)	376, 389
BstV1I	GCAGC	1 cut(s)	295
BsuRI	GGCC	3 cut(s)	57, 98, 348
BtgZI	GCGATG	1 cut(s)	304
BtsCI	GGATG	1 cut(s)	391
BtsIMutI	CAGTG	1 cut(s)	261
CciI	TCATGA	1 cut(s)	73
CfoI	GCGC	1 cut(s)	243
CviAII	CATG	3 cut(s)	74, 202, 305
DdeI	CTNAG	1 cut(s)	287
DpnI	GATC	3 cut(s)	72, 224, 317
DpnII	GATC	3 cut(s)	70, 222, 315
EaeI	YGGCCR	2 cut(s)	55, 346
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
EcoRI	GAATTC	1 cut(s)	118
EcoRII	CCWGG	2 cut(s)	376, 389
FaeI	CATG	3 cut(s)	77, 205, 308
FaiI	YATR	5 cut(s)	75, 152, 203, 306, 345
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FatI	CATG	3 cut(s)	73, 201, 304
Fnu4HI	GCNGC	2 cut(s)	219, 284
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	2 cut(s)	219, 284
GlaI	GCGC	1 cut(s)	242
GluI	GCNGC	2 cut(s)	219, 284
GsuI	CTGGAG	1 cut(s)	69
HaeIII	GGCC	3 cut(s)	57, 98, 348
HapII	CCGG	3 cut(s)	99, 110, 249
HhaI	GCGC	1 cut(s)	243
Hin1II	CATG	3 cut(s)	77, 205, 308
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HpaII	CCGG	3 cut(s)	99, 110, 249
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	1 cut(s)	74
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	3 cut(s)	133, 169, 375
HpyCH4III	ACNGT	2 cut(s)	13, 265
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	1 cut(s)	287
Hsp92II	CATG	3 cut(s)	77, 205, 308
HspAI	GCGC	1 cut(s)	241
Kzo9I	GATC	3 cut(s)	70, 222, 315
LmnI	GCTCC	3 cut(s)	101, 205, 251
Lsp1109I	GCAGC	1 cut(s)	295
LweI	GCATC	2 cut(s)	316, 376
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	3 cut(s)	72, 224, 317
MbiI	CCGCTC	1 cut(s)	68
MboI	GATC	3 cut(s)	70, 222, 315
MboII	GAAGA	2 cut(s)	47, 349
MlsI	TGGCCA	2 cut(s)	57, 348
MluCI	AATT	2 cut(s)	19, 118
MluNI	TGGCCA	2 cut(s)	57, 348
MnlI	CCTC	5 cut(s)	88, 151, 208, 282, 289
Mox20I	TGGCCA	2 cut(s)	57, 348
MroXI	GAANNNNTTC	1 cut(s)	122
MscI	TGGCCA	2 cut(s)	57, 348
MseI	TTAA	1 cut(s)	406
Msp20I	TGGCCA	2 cut(s)	57, 348
MspA1I	CMGCKG	1 cut(s)	286
MspI	CCGG	3 cut(s)	99, 110, 249
MspR9I	CCNGG	2 cut(s)	378, 391
MvaI	CCWGG	2 cut(s)	378, 391
MwoI	GCNNNNNNNGC	1 cut(s)	224
NdeII	GATC	3 cut(s)	70, 222, 315
NlaIII	CATG	3 cut(s)	77, 205, 308
NlaIV	GGNNCC	1 cut(s)	186
NmeAIII	GCCGAG	1 cut(s)	269
NmuCI	GTSAC	1 cut(s)	259
PagI	TCATGA	1 cut(s)	73
PdmI	GAANNNNTTC	1 cut(s)	122
PflMI	CCANNNNNTGG	1 cut(s)	31
PkrI	GCNGC	2 cut(s)	220, 285
Ple19I	CGATCG	1 cut(s)	225
Psp6I	CCWGG	2 cut(s)	376, 389
PspGI	CCWGG	2 cut(s)	376, 389
PspN4I	GGNNCC	1 cut(s)	186
PvuI	CGATCG	1 cut(s)	225
PvuII	CAGCTG	1 cut(s)	286
RgaI	GCGATCGC	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	406
SatI	GCNGC	2 cut(s)	219, 284
Sau3AI	GATC	3 cut(s)	70, 222, 315
ScrFI	CCNGG	2 cut(s)	378, 391
SetI	ASST	9 cut(s)	157, 180, 210, 256, 288, 356, 366, 379, 395
SfaAI	GCGATCGC	1 cut(s)	225
SfaNI	GCATC	2 cut(s)	316, 376
SgfI	GCGATCGC	1 cut(s)	225
Sse9I	AATT	2 cut(s)	19, 118
SsiI	CCGC	3 cut(s)	68, 147, 218
StyD4I	CCNGG	2 cut(s)	376, 389
TaaI	ACNGT	2 cut(s)	13, 265
TaqI	TCGA	1 cut(s)	231
TasI	AATT	2 cut(s)	19, 118
TauI	GCSGC	1 cut(s)	221
Tru1I	TTAA	1 cut(s)	406
Tru9I	TTAA	1 cut(s)	406
TscAI	CASTG	1 cut(s)	268
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	90
TspRI	CASTG	1 cut(s)	268
Van91I	CCANNNNNTGG	1 cut(s)	31
XapI	RAATTY	1 cut(s)	118
XcmI	CCANNNNNNNNNTGG	1 cut(s)	178
XmnI	GAANNNNTTC	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.