Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017063.1

Orthogroup ID

OG0002158

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 585

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017063.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

atgtgtctgagaggggaggccaacatgctgttctgcactgatgaggcagcgctgtgcttcgatgtccttaacctcttcatgatgacagtgaggggtgctctaaactctgccttcgatgaggaaatgtatgccgatctgaaagtgtttttgatgggtgaagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko04066 ko04922 ko05230 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200 map04066 map04922 map05230

Pfam Domains

Protein Families

Transket_pyr Transketolase_C

Protein Analysis

54

Amino Acids

6.12

Weight (kDa)

4.07

Isoelectric Point (pI)

35.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002158)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g10710
rosa_chinensis	RchiOBHm_Chr1g0352931 RchiOBHm_Chr1g0379931 RchiOBHm_Chr2g0127521 RchiOBHm_Chr5g0077921 RchiOBHm_Chr6g0254011 RchiOBHm_Chr7g0224991
rosa_laevigata	RLG00000010747 RLG00000036727
rosa_multiflora	Rmu_co8264081.1_g000001 Rmu_co8475729.1_g000001 Rmu_sc0000512.1_g000010 Rmu_sc0002563.1_g000056 Rmu_sc0003651.1_g000010 Rmu_sc0008382.1_g000016 Rmu_sc0011010.1_g000011 Rmu_sc0014844.1_g000012 Rmu_sc0017063.1_g000001 Rmu_sc0019512.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012710 Rroxscaffold_7G00161280
rosa_rugosa	Rorug01G0236000 Rorug02G0221700
rosa_samantha	Rh1BG320400 Rh1CG044300 Rh1CG334400 Rh1DG351000 Rh2AG096900 Rh2AG182700 Rh2BG335100 Rh2CG313300 Rh2CG351300 Rh2DG352700 Rh2DG390400 Rh3BG073400 Rh4CG209000 Rh5AG316800 Rh5AG511900 Rh6BG273400 Rh6BG434200 Rh6DG468100
rosa_wichuraiana	Rw2G026410 Rw4G021840 Rw6G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfeI	AGCGCT	1 cut(s)	51
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
Alw21I	GWGCWC	1 cut(s)	100
Aor51HI	AGCGCT	1 cut(s)	51
AoxI	GGCC	1 cut(s)	18
ApeKI	GCWGC	1 cut(s)	47
AspLEI	GCGC	1 cut(s)	52
Bbv12I	GWGCWC	1 cut(s)	100
BbvI	GCAGC	1 cut(s)	59
BccI	CCATC	1 cut(s)	145
BfoI	RGCGCY	1 cut(s)	53
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
BplI	GAGNNNNNCTC	2 cut(s)	82, 114
BseXI	GCAGC	1 cut(s)	59
BsgI	GTGCAG	1 cut(s)	19
BshFI	GGCC	1 cut(s)	20
BsiHKAI	GWGCWC	1 cut(s)	100
BsnI	GGCC	1 cut(s)	20
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp143I	GATC	1 cut(s)	133
BspANI	GGCC	1 cut(s)	20
BspHI	TCATGA	1 cut(s)	78
BssMI	GATC	1 cut(s)	133
Bst4CI	ACNGT	1 cut(s)	88
Bst6I	CTCTTC	2 cut(s)	80, 153
BstDEI	CTNAG	1 cut(s)	8
BstH2I	RGCGCY	1 cut(s)	53
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	1 cut(s)	136
BstMBI	GATC	1 cut(s)	133
BstNSI	RCATGY	1 cut(s)	28
BstV1I	GCAGC	1 cut(s)	59
BsuRI	GGCC	1 cut(s)	20
BtsIMutI	CAGTG	2 cut(s)	36, 93
CciI	TCATGA	1 cut(s)	78
CfoI	GCGC	1 cut(s)	52
CviAII	CATG	2 cut(s)	25, 79
CviJI	RGCY	1 cut(s)	20
CviKI_1	RGCY	1 cut(s)	20
DdeI	CTNAG	1 cut(s)	8
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
Eam1104I	CTCTTC	2 cut(s)	80, 153
EarI	CTCTTC	2 cut(s)	80, 153
Eco47III	AGCGCT	1 cut(s)	51
FaeI	CATG	2 cut(s)	28, 82
FaiI	YATR	3 cut(s)	26, 80, 129
FatI	CATG	2 cut(s)	24, 78
Fnu4HI	GCNGC	1 cut(s)	48
Fsp4HI	GCNGC	1 cut(s)	48
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	48
HaeII	RGCGCY	1 cut(s)	53
HaeIII	GGCC	1 cut(s)	20
HhaI	GCGC	1 cut(s)	52
Hin1II	CATG	2 cut(s)	28, 82
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
Hpy188I	TCNGA	2 cut(s)	9, 138
Hpy188III	TCNNGA	1 cut(s)	79
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4V	TGCA	1 cut(s)	36
HpyF3I	CTNAG	1 cut(s)	8
Hsp92II	CATG	2 cut(s)	28, 82
HspAI	GCGC	1 cut(s)	50
Kzo9I	GATC	1 cut(s)	133
Lsp1109I	GCAGC	1 cut(s)	59
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	100
MnlI	CCTC	6 cut(s)	5, 10, 37, 83, 84, 112
MseI	TTAA	1 cut(s)	69
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	2 cut(s)	28, 82
NspI	RCATGY	1 cut(s)	28
PagI	TCATGA	1 cut(s)	78
PkrI	GCNGC	1 cut(s)	49
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	1 cut(s)	133
SduI	GDGCHC	1 cut(s)	100
SetI	ASST	1 cut(s)	75
SgeI	CNNG	2 cut(s)	37, 91
TaaI	ACNGT	1 cut(s)	88
TaqI	TCGA	2 cut(s)	60, 114
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	2 cut(s)	43, 93
TseI	GCWGC	1 cut(s)	47
TspDTI	ATGAA	1 cut(s)	67
TspRI	CASTG	2 cut(s)	43, 93
XceI	RCATGY	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.