Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003651.1

Orthogroup ID

OG0002158

Physical Location & Seq

Genomic Coordinates Reverse (-)

30659 .. 31671

Gene Structure 1013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003651.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atggaggagatagagtgccctagatccactttctctctcctccatctgtctctcctcctcgccttcaaactagggtcaattgaagagatgcagaagacgaagctgtccgagacagcagaggtgacggtggaggcgaacgcactgtgctttgatgtccttaacctcttcactctcgacccccgccaccacctccgcacaaagctccaaaacaaaccacctccagtccccaaagttctggttccgattgagaatggcatggagctgatggaggctgcgatcaccatcgatgttctgctccgagccggagttgatgtcactgtggcttatgtggagaagcagctgagggttgaggcttgtcatggggttgagatcatcgttgatgctttggtttcgcactatggccagagcttcttcgatctcattactctacctgtgagtactcagtccctctatatatgtgtcctgaatcgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0006081 GO:0006082 GO:0006089 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009438 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019172 GO:0019249 GO:0019752 GO:0030054 GO:0031090 GO:0032787 GO:0042180 GO:0042182 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046185 GO:0046394 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051596 GO:0055044 GO:0061727 GO:0065007 GO:0071704 GO:0071944 GO:0072330 GO:0080134 GO:0080135 GO:0098588 GO:0098805 GO:1900407 GO:1900409 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902882 GO:1902884

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

157

Amino Acids

17.54

Weight (kDa)

5.17

Isoelectric Point (pI)

55.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002158)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g10710
rosa_chinensis	RchiOBHm_Chr1g0352931 RchiOBHm_Chr1g0379931 RchiOBHm_Chr2g0127521 RchiOBHm_Chr5g0077921 RchiOBHm_Chr6g0254011 RchiOBHm_Chr7g0224991
rosa_laevigata	RLG00000010747 RLG00000036727
rosa_multiflora	Rmu_co8264081.1_g000001 Rmu_co8475729.1_g000001 Rmu_sc0000512.1_g000010 Rmu_sc0002563.1_g000056 Rmu_sc0003651.1_g000010 Rmu_sc0008382.1_g000016 Rmu_sc0011010.1_g000011 Rmu_sc0014844.1_g000012 Rmu_sc0017063.1_g000001 Rmu_sc0019512.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012710 Rroxscaffold_7G00161280
rosa_rugosa	Rorug01G0236000 Rorug02G0221700
rosa_samantha	Rh1BG320400 Rh1CG044300 Rh1CG334400 Rh1DG351000 Rh2AG096900 Rh2AG182700 Rh2BG335100 Rh2CG313300 Rh2CG351300 Rh2DG352700 Rh2DG390400 Rh3BG073400 Rh4CG209000 Rh5AG316800 Rh5AG511900 Rh6BG273400 Rh6BG434200 Rh6DG468100
rosa_wichuraiana	Rw2G026410 Rw4G021840 Rw6G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	103
AciI	CCGC	2 cut(s)	181, 193
AclWI	GGATC	1 cut(s)	18
AcoI	YGGCCR	1 cut(s)	400
AfaI	GTAC	1 cut(s)	439
AgsI	TTSAA	2 cut(s)	67, 83
AluBI	AGCT	5 cut(s)	103, 202, 262, 340, 408
AluI	AGCT	5 cut(s)	103, 202, 262, 340, 408
Alw26I	GTCTC	2 cut(s)	54, 104
AlwI	GGATC	1 cut(s)	18
AoxI	GGCC	1 cut(s)	400
ApeKI	GCWGC	2 cut(s)	272, 337
AsuHPI	GGTGA	2 cut(s)	133, 271
BaeGI	GKGCMC	1 cut(s)	20
BalI	TGGCCA	1 cut(s)	402
BbsI	GAAGAC	1 cut(s)	101
BbvCI	CCTCAGC	1 cut(s)	341
BbvI	GCAGC	2 cut(s)	259, 349
BccI	CCATC	3 cut(s)	51, 259, 290
BcoDI	GTCTC	2 cut(s)	54, 104
BfaI	CTAG	2 cut(s)	21, 71
BisI	GCNGC	2 cut(s)	273, 338
BlsI	GCNGC	2 cut(s)	274, 339
BmcAI	AGTACT	1 cut(s)	439
BmiI	GGNNCC	1 cut(s)	240
BmsI	GCATC	2 cut(s)	78, 370
BpiI	GAAGAC	1 cut(s)	101
BpmI	CTGGAG	1 cut(s)	204
Bpu10I	CCTNAGC	1 cut(s)	341
Bsa29I	ATCGAT	2 cut(s)	285, 469
BsaBI	GATNNNNATC	1 cut(s)	281
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 297, 327
Bse1I	ACTGG	1 cut(s)	221
Bse8I	GATNNNNATC	1 cut(s)	281
BseCI	ATCGAT	2 cut(s)	285, 469
BseJI	GATNNNNATC	1 cut(s)	281
BseMII	CTCAG	2 cut(s)	332, 455
BseNI	ACTGG	1 cut(s)	221
BseRI	GAGGAG	4 cut(s)	20, 29, 44, 47
BseSI	GKGCMC	1 cut(s)	20
BseXI	GCAGC	2 cut(s)	259, 349
BshFI	GGCC	1 cut(s)	402
BshVI	ATCGAT	2 cut(s)	285, 469
BsiSI	CCGG	1 cut(s)	303
BslFI	GGGAC	2 cut(s)	209, 430
BsmAI	GTCTC	2 cut(s)	54, 104
BsmFI	GGGAC	2 cut(s)	209, 430
BsnI	GGCC	1 cut(s)	402
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	4 cut(s)	23, 276, 369, 415
BspACI	CCGC	2 cut(s)	181, 193
BspANI	GGCC	1 cut(s)	402
BspCNI	CTCAG	2 cut(s)	333, 454
BspDI	ATCGAT	2 cut(s)	285, 469
BspLI	GGNNCC	1 cut(s)	240
BspPI	GGATC	1 cut(s)	18
BsrI	ACTGG	1 cut(s)	221
BssMI	GATC	4 cut(s)	23, 276, 369, 415
Bst4CI	ACNGT	3 cut(s)	127, 144, 319
Bst6I	CTCTTC	2 cut(s)	78, 170
BstDEI	CTNAG	2 cut(s)	341, 441
BstKTI	GATC	4 cut(s)	26, 279, 372, 418
BstMAI	GTCTC	2 cut(s)	54, 104
BstMBI	GATC	4 cut(s)	23, 276, 369, 415
BstSLI	GKGCMC	1 cut(s)	20
BstV1I	GCAGC	2 cut(s)	259, 349
BstV2I	GAAGAC	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	23
BstXI	CCANNNNNNTGG	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	23
Bsu15I	ATCGAT	2 cut(s)	285, 469
BsuRI	GGCC	1 cut(s)	402
BsuTUI	ATCGAT	2 cut(s)	285, 469
BtsIMutI	CAGTG	2 cut(s)	140, 315
ClaI	ATCGAT	2 cut(s)	285, 469
Csp6I	GTAC	1 cut(s)	438
CviAII	CATG	2 cut(s)	256, 359
CviQI	GTAC	1 cut(s)	438
DdeI	CTNAG	2 cut(s)	341, 441
DpnI	GATC	4 cut(s)	25, 278, 371, 417
DpnII	GATC	4 cut(s)	23, 276, 369, 415
DrdI	GACNNNNNNGTC	1 cut(s)	103
DseDI	GACNNNNNNGTC	1 cut(s)	103
EaeI	YGGCCR	1 cut(s)	400
Eam1104I	CTCTTC	2 cut(s)	78, 170
EarI	CTCTTC	2 cut(s)	78, 170
FaeI	CATG	2 cut(s)	259, 362
FaiI	YATR	7 cut(s)	257, 327, 360, 399, 453, 455, 457
FaqI	GGGAC	2 cut(s)	209, 430
FatI	CATG	2 cut(s)	255, 358
FauI	CCCGC	1 cut(s)	188
Fnu4HI	GCNGC	2 cut(s)	273, 338
Fsp4HI	GCNGC	2 cut(s)	273, 338
FspBI	CTAG	2 cut(s)	21, 71
GluI	GCNGC	2 cut(s)	273, 338
GsuI	CTGGAG	1 cut(s)	204
HaeIII	GGCC	1 cut(s)	402
HapII	CCGG	1 cut(s)	303
Hin1II	CATG	2 cut(s)	259, 362
HinfI	GANTC	1 cut(s)	466
HpaII	CCGG	1 cut(s)	303
HphI	GGTGA	2 cut(s)	133, 271
Hpy188I	TCNGA	3 cut(s)	109, 243, 299
Hpy188III	TCNNGA	2 cut(s)	173, 463
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	3 cut(s)	127, 144, 319
HpyCH4V	TGCA	1 cut(s)	91
HpyF3I	CTNAG	2 cut(s)	341, 441
Hsp92II	CATG	2 cut(s)	259, 362
Kzo9I	GATC	4 cut(s)	23, 276, 369, 415
LmnI	GCTCC	3 cut(s)	207, 259, 300
LpnPI	CCDG	5 cut(s)	221, 234, 316, 416, 444
Lsp1109I	GCAGC	2 cut(s)	259, 349
LweI	GCATC	2 cut(s)	78, 370
MaeI	CTAG	2 cut(s)	21, 71
MaeIII	GTNAC	2 cut(s)	121, 313
MalI	GATC	4 cut(s)	25, 278, 371, 417
MboI	GATC	4 cut(s)	23, 276, 369, 415
MboII	GAAGA	4 cut(s)	95, 106, 157, 403
MfeI	CAATTG	1 cut(s)	78
MflI	RGATCY	1 cut(s)	23
MhlI	GDGCHC	1 cut(s)	20
MlsI	TGGCCA	1 cut(s)	402
MluCI	AATT	1 cut(s)	78
MluNI	TGGCCA	1 cut(s)	402
Mox20I	TGGCCA	1 cut(s)	402
MscI	TGGCCA	1 cut(s)	402
MseI	TTAA	1 cut(s)	159
Msp20I	TGGCCA	1 cut(s)	402
MspA1I	CMGCKG	1 cut(s)	340
MspI	CCGG	1 cut(s)	303
MunI	CAATTG	1 cut(s)	78
NdeII	GATC	4 cut(s)	23, 276, 369, 415
NlaIII	CATG	2 cut(s)	259, 362
NlaIV	GGNNCC	1 cut(s)	240
NmuCI	GTSAC	2 cut(s)	121, 313
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	466
PkrI	GCNGC	2 cut(s)	274, 339
PspN4I	GGNNCC	1 cut(s)	240
PsuI	RGATCY	1 cut(s)	23
PvuII	CAGCTG	1 cut(s)	340
RsaI	GTAC	1 cut(s)	439
RsaNI	GTAC	1 cut(s)	438
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	2 cut(s)	273, 338
Sau3AI	GATC	4 cut(s)	23, 276, 369, 415
ScaI	AGTACT	1 cut(s)	439
SduI	GDGCHC	1 cut(s)	20
SfaNI	GCATC	2 cut(s)	78, 370
Sse9I	AATT	1 cut(s)	78
SsiI	CCGC	2 cut(s)	181, 193
SspMI	CTAG	2 cut(s)	21, 71
TaaI	ACNGT	3 cut(s)	127, 144, 319
TaqI	TCGA	4 cut(s)	174, 285, 414, 469
TasI	AATT	1 cut(s)	78
TatI	WGTACW	1 cut(s)	437
TfiI	GAWTC	1 cut(s)	466
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	2 cut(s)	147, 322
TseFI	GTSAC	2 cut(s)	121, 313
TseI	GCWGC	2 cut(s)	272, 337
Tsp45I	GTSAC	2 cut(s)	121, 313
TspRI	CASTG	2 cut(s)	147, 322
XspI	CTAG	2 cut(s)	21, 71
ZrmI	AGTACT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.