Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002158

Physical Location & Seq

Genomic Coordinates Forward (+)

8215612 .. 8220037

Gene Structure 4426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG096900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGCACTCTGGCAGTGGTGCGAAGCGGCTTTGCGCCGGGGAGCGAAAGATAACTGAGGACTTCTGGATAAGTATGGCCTTGAGAGGGTTCTCGATACCTCAATCACAGAGATGCTTCAGGGCTTTCCAGAGAGTGAAACATGTGCATGAGGCATTAAAGAGGCAGTTTGAAACTCATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0035556 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

60

Amino Acids

7.05

Weight (kDa)

10.42

Isoelectric Point (pI)

46.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002158)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g10710
rosa_chinensis	RchiOBHm_Chr1g0352931 RchiOBHm_Chr1g0379931 RchiOBHm_Chr2g0127521 RchiOBHm_Chr5g0077921 RchiOBHm_Chr6g0254011 RchiOBHm_Chr7g0224991
rosa_laevigata	RLG00000010747 RLG00000036727
rosa_multiflora	Rmu_co8264081.1_g000001 Rmu_co8475729.1_g000001 Rmu_sc0000512.1_g000010 Rmu_sc0002563.1_g000056 Rmu_sc0003651.1_g000010 Rmu_sc0008382.1_g000016 Rmu_sc0011010.1_g000011 Rmu_sc0014844.1_g000012 Rmu_sc0017063.1_g000001 Rmu_sc0019512.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012710 Rroxscaffold_7G00161280
rosa_rugosa	Rorug01G0236000 Rorug02G0221700
rosa_samantha	Rh1BG320400 Rh1CG044300 Rh1CG334400 Rh1DG351000 Rh2AG096900 Rh2AG182700 Rh2BG335100 Rh2CG313300 Rh2CG351300 Rh2DG352700 Rh2DG390400 Rh3BG073400 Rh4CG209000 Rh5AG316800 Rh5AG511900 Rh6BG273400 Rh6BG434200 Rh6DG468100
rosa_wichuraiana	Rw2G026410 Rw4G021840 Rw6G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	25
AcuI	CTGAAG	1 cut(s)	100
AfiI	CCNNNNNNNGG	1 cut(s)	84
AflIII	ACRYGT	1 cut(s)	139
AgsI	TTSAA	1 cut(s)	170
AoxI	GGCC	1 cut(s)	75
AspLEI	GCGC	1 cut(s)	35
AsuC2I	CCSGG	1 cut(s)	37
BcnI	CCSGG	1 cut(s)	37
BfaI	CTAG	1 cut(s)	181
BisI	GCNGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	27
Bme1390I	CCNGG	1 cut(s)	37
BmrFI	CCNGG	1 cut(s)	37
BmsI	GCATC	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	100
BpuMI	CCSGG	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	36
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseMII	CTCAG	1 cut(s)	45
BshFI	GGCC	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	36
BslI	CCNNNNNNNGG	1 cut(s)	84
BsnI	GGCC	1 cut(s)	77
BspACI	CCGC	1 cut(s)	25
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	36
BstDEI	CTNAG	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	35
BstNSI	RCATGY	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	35
BsuRI	GGCC	1 cut(s)	77
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	19
CfoI	GCGC	1 cut(s)	35
CviAII	CATG	2 cut(s)	140, 146
CviJI	RGCY	3 cut(s)	28, 77, 122
CviKI_1	RGCY	3 cut(s)	28, 77, 122
DdeI	CTNAG	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	100
FaeI	CATG	2 cut(s)	143, 149
FaiI	YATR	3 cut(s)	74, 141, 147
FatI	CATG	2 cut(s)	139, 145
Fnu4HI	GCNGC	1 cut(s)	26
Fsp4HI	GCNGC	1 cut(s)	26
FspBI	CTAG	1 cut(s)	181
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	1 cut(s)	36
HhaI	GCGC	1 cut(s)	35
Hin1II	CATG	2 cut(s)	143, 149
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HpaII	CCGG	1 cut(s)	36
Hpy188III	TCNNGA	3 cut(s)	64, 91, 127
HpyCH4V	TGCA	2 cut(s)	4, 145
HpyF3I	CTNAG	1 cut(s)	54
Hsp92II	CATG	2 cut(s)	143, 149
HspAI	GCGC	1 cut(s)	33
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	4 cut(s)	49, 49, 103, 140
LweI	GCATC	1 cut(s)	101
MaeI	CTAG	1 cut(s)	181
MnlI	CCTC	5 cut(s)	49, 77, 108, 142, 153
MseI	TTAA	1 cut(s)	155
MslI	CAYNNNNRTG	2 cut(s)	109, 144
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	1 cut(s)	37
NciI	CCSGG	1 cut(s)	37
NlaIII	CATG	2 cut(s)	143, 149
NspI	RCATGY	1 cut(s)	143
PciI	ACATGT	1 cut(s)	139
PkrI	GCNGC	1 cut(s)	27
PscI	ACATGT	1 cut(s)	139
RseI	CAYNNNNRTG	2 cut(s)	109, 144
SaqAI	TTAA	1 cut(s)	155
SatI	GCNGC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	37
SetI	ASST	1 cut(s)	100
SfaNI	GCATC	1 cut(s)	101
SmiMI	CAYNNNNRTG	2 cut(s)	109, 144
SmlI	CTYRAG	1 cut(s)	79
SmoI	CTYRAG	1 cut(s)	79
SsiI	CCGC	1 cut(s)	25
SspMI	CTAG	1 cut(s)	181
StyD4I	CCNGG	1 cut(s)	35
TaqI	TCGA	1 cut(s)	92
TauI	GCSGC	1 cut(s)	28
Tru1I	TTAA	1 cut(s)	155
Tru9I	TTAA	1 cut(s)	155
TscAI	CASTG	1 cut(s)	19
TspRI	CASTG	1 cut(s)	19
XceI	RCATGY	1 cut(s)	143
XspI	CTAG	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.