Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008382.1

Orthogroup ID

OG0002158

Physical Location & Seq

Genomic Coordinates Reverse (-)

54288 .. 59488

Gene Structure 5201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008382.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

atggaggagatagagtgccctagatccactttctctctcctccatctgtctctcctcctcaccttcaaactagggtcaattgaagagatgcagaagacgaagctgtccaagacagcagaggctacgacagaggcgaacgcactgtgctttgatgtccttaacctcttcactctcgacccccgccaccacctccgcacaaagctccaaaacaaaccacctccagtccccaaagtcaccctagacttccccttcacagtattaaaattccttcactctctctctctcccctccacctccatagcttctgcttctcccaccaagaaggttctggttccgattgcgaatggcatggagctgatggaggcggcgatcgccgtcgatgttctgtgccgagccggagctgatgtgactgtggcttctgtggagaagcagctgaggtttaaggcttgtcatggggttcagttcatcgctgatgctttggtttcgcactatggccagagcttcttcgatctcattactctacctaaaaagtttgatgcatcggttttcaaaatagcttgcgcccaggctgcaaagaataaatgggtggactttggaaagcaactagtgaccccaggcagagtgatcccagaaagagtgatcccaggaattgagctggtgcggttagcatcatggtgtttgcagtatgaacctcatgagaggccaaatgccaagtttcttgtgactgcccttgttcttcttcaaaaggaaacttcgttgaagcgaaaagatattatatcagcttttgtttcatgtataggcggggctaaccatgccgcggggcccacctatgaggtcgttgattatgcttggcgggcaattgaagtgacatttgtgttaaatgcaccaaggtgcatgaacgtttatgagatgcatgatgcaaagatgtttgatgaacacggtaagacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0006081 GO:0006082 GO:0006089 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009438 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019172 GO:0019249 GO:0019752 GO:0030054 GO:0031090 GO:0032787 GO:0042180 GO:0042182 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046185 GO:0046394 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051596 GO:0055044 GO:0061727 GO:0065007 GO:0071704 GO:0071944 GO:0072330 GO:0080134 GO:0080135 GO:0098588 GO:0098805 GO:1900407 GO:1900409 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902882 GO:1902884

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

316

Amino Acids

35.07

Weight (kDa)

8.54

Isoelectric Point (pI)

43.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002158)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g10710
rosa_chinensis	RchiOBHm_Chr1g0352931 RchiOBHm_Chr1g0379931 RchiOBHm_Chr2g0127521 RchiOBHm_Chr5g0077921 RchiOBHm_Chr6g0254011 RchiOBHm_Chr7g0224991
rosa_laevigata	RLG00000010747 RLG00000036727
rosa_multiflora	Rmu_co8264081.1_g000001 Rmu_co8475729.1_g000001 Rmu_sc0000512.1_g000010 Rmu_sc0002563.1_g000056 Rmu_sc0003651.1_g000010 Rmu_sc0008382.1_g000016 Rmu_sc0011010.1_g000011 Rmu_sc0014844.1_g000012 Rmu_sc0017063.1_g000001 Rmu_sc0019512.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012710 Rroxscaffold_7G00161280
rosa_rugosa	Rorug01G0236000 Rorug02G0221700
rosa_samantha	Rh1BG320400 Rh1CG044300 Rh1CG334400 Rh1DG351000 Rh2AG096900 Rh2AG182700 Rh2BG335100 Rh2CG313300 Rh2CG351300 Rh2DG352700 Rh2DG390400 Rh3BG073400 Rh4CG209000 Rh5AG316800 Rh5AG511900 Rh6BG273400 Rh6BG434200 Rh6DG468100
rosa_wichuraiana	Rw2G026410 Rw4G021840 Rw6G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	103
AccII	CGCG	1 cut(s)	818
AciI	CCGC	8 cut(s)	181, 193, 365, 661, 801, 816, 818, 853
AclI	AACGTT	1 cut(s)	900
AclWI	GGATC	3 cut(s)	18, 619, 634
AcoI	YGGCCR	1 cut(s)	493
AcsI	RAATTY	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	817
AgsI	TTSAA	6 cut(s)	67, 83, 550, 743, 760, 863
AhlI	ACTAGT	1 cut(s)	604
AjnI	CCWGG	3 cut(s)	564, 613, 643
AleI	CACNNNNGTG	1 cut(s)	889
Alw26I	GTCTC	1 cut(s)	54
AlwI	GGATC	3 cut(s)	18, 619, 634
AoxI	GGCC	3 cut(s)	493, 701, 821
ApaI	GGGCCC	1 cut(s)	825
ApeKI	GCWGC	2 cut(s)	430, 569
ApoI	RAATTY	1 cut(s)	263
AsiSI	GCGATCGC	1 cut(s)	372
AspLEI	GCGC	1 cut(s)	563
AspS9I	GGNCC	2 cut(s)	821, 822
AsuHPI	GGTGA	2 cut(s)	52, 226
BaeGI	GKGCMC	2 cut(s)	20, 825
BalI	TGGCCA	1 cut(s)	495
BanII	GRGCYC	1 cut(s)	825
BbsI	GAAGAC	1 cut(s)	101
BbvCI	CCTCAGC	1 cut(s)	434
BbvI	GCAGC	2 cut(s)	442, 556
BccI	CCATC	2 cut(s)	51, 352
BceAI	ACGGC	1 cut(s)	359
BciT130I	CCWGG	3 cut(s)	566, 615, 645
BcoDI	GTCTC	1 cut(s)	54
BcuI	ACTAGT	1 cut(s)	604
BfaI	CTAG	4 cut(s)	21, 71, 239, 605
BisI	GCNGC	4 cut(s)	366, 431, 570, 816
BlsI	GCNGC	4 cut(s)	367, 432, 571, 817
Bme1390I	CCNGG	3 cut(s)	566, 615, 645
BmgT120I	GGNCC	2 cut(s)	821, 822
BmiI	GGNNCC	3 cut(s)	333, 822, 823
BmrFI	CCNGG	3 cut(s)	566, 615, 645
BmsI	GCATC	7 cut(s)	78, 463, 526, 548, 677, 900, 907
BpiI	GAAGAC	1 cut(s)	101
BpmI	CTGGAG	1 cut(s)	204
Bpu10I	CCTNAGC	1 cut(s)	434
BsaJI	CCNNGG	5 cut(s)	564, 613, 643, 816, 887
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 390, 420
Bsc4I	CCNNNNNNNGG	1 cut(s)	817
Bse1I	ACTGG	1 cut(s)	221
BseBI	CCWGG	3 cut(s)	566, 615, 645
BseDI	CCNNGG	5 cut(s)	564, 613, 643, 816, 887
BseLI	CCNNNNNNNGG	1 cut(s)	817
BseMII	CTCAG	1 cut(s)	425
BseNI	ACTGG	1 cut(s)	221
BseRI	GAGGAG	4 cut(s)	20, 29, 44, 47
BseSI	GKGCMC	2 cut(s)	20, 825
BseXI	GCAGC	2 cut(s)	442, 556
Bsh1236I	CGCG	1 cut(s)	818
Bsh1285I	CGRYCG	1 cut(s)	372
BshFI	GGCC	3 cut(s)	495, 703, 823
BsiEI	CGRYCG	1 cut(s)	372
BsiSI	CCGG	1 cut(s)	396
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	1 cut(s)	817
BsmAI	GTCTC	1 cut(s)	54
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	3 cut(s)	495, 703, 823
Bsp120I	GGGCCC	1 cut(s)	821
Bsp1286I	GDGCHC	2 cut(s)	20, 825
Bsp143I	GATC	5 cut(s)	23, 369, 508, 624, 639
BspACI	CCGC	8 cut(s)	181, 193, 365, 661, 801, 816, 818, 853
BspANI	GGCC	3 cut(s)	495, 703, 823
BspCNI	CTCAG	1 cut(s)	426
BspFNI	CGCG	1 cut(s)	818
BspHI	TCATGA	1 cut(s)	694
BspLI	GGNNCC	3 cut(s)	333, 822, 823
BspPI	GGATC	3 cut(s)	18, 619, 634
BsrI	ACTGG	1 cut(s)	221
BssECI	CCNNGG	5 cut(s)	564, 613, 643, 816, 887
BssMI	GATC	5 cut(s)	23, 369, 508, 624, 639
BssT1I	CCWWGG	1 cut(s)	887
Bst2UI	CCWGG	3 cut(s)	566, 615, 645
Bst4CI	ACNGT	4 cut(s)	144, 256, 412, 941
Bst6I	CTCTTC	2 cut(s)	78, 170
BstC8I	GCNNGC	2 cut(s)	559, 855
BstDEI	CTNAG	1 cut(s)	434
BstDSI	CCRYGG	1 cut(s)	816
BstFNI	CGCG	1 cut(s)	818
BstHHI	GCGC	1 cut(s)	563
BstKTI	GATC	5 cut(s)	26, 372, 511, 627, 642
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	5 cut(s)	23, 369, 508, 624, 639
BstMCI	CGRYCG	1 cut(s)	372
BstMWI	GCNNNNNNNGC	4 cut(s)	371, 569, 812, 854
BstNI	CCWGG	3 cut(s)	566, 615, 645
BstSCI	CCNGG	3 cut(s)	564, 613, 643
BstSLI	GKGCMC	2 cut(s)	20, 825
BstUI	CGCG	1 cut(s)	818
BstV1I	GCAGC	2 cut(s)	442, 556
BstV2I	GAAGAC	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
BsuRI	GGCC	3 cut(s)	495, 703, 823
BtgI	CCRYGG	1 cut(s)	816
BtgZI	GCGATG	1 cut(s)	451
BtsIMutI	CAGTG	1 cut(s)	140
Cac8I	GCNNGC	2 cut(s)	559, 855
CciI	TCATGA	1 cut(s)	694
CfoI	GCGC	1 cut(s)	563
Cfr13I	GGNCC	2 cut(s)	821, 822
Cfr42I	CCGCGG	1 cut(s)	819
CviAII	CATG	8 cut(s)	349, 452, 672, 695, 792, 812, 895, 914
DdeI	CTNAG	1 cut(s)	434
DpnI	GATC	5 cut(s)	25, 371, 510, 626, 641
DpnII	GATC	5 cut(s)	23, 369, 508, 624, 639
DrdI	GACNNNNNNGTC	1 cut(s)	103
DseDI	GACNNNNNNGTC	1 cut(s)	103
EaeI	YGGCCR	1 cut(s)	493
Eam1104I	CTCTTC	2 cut(s)	78, 170
EarI	CTCTTC	2 cut(s)	78, 170
Eco130I	CCWWGG	1 cut(s)	887
Eco24I	GRGCYC	1 cut(s)	825
EcoO109I	RGGNCCY	1 cut(s)	821
EcoRII	CCWGG	3 cut(s)	564, 613, 643
EcoT14I	CCWWGG	1 cut(s)	887
EcoT22I	ATGCAT	2 cut(s)	541, 915
EcoT38I	GRGCYC	1 cut(s)	825
ErhI	CCWWGG	1 cut(s)	887
FaeI	CATG	8 cut(s)	352, 455, 675, 698, 795, 815, 898, 917
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	8 cut(s)	348, 451, 671, 694, 791, 811, 894, 913
FauI	CCCGC	4 cut(s)	188, 794, 811, 846
Fnu4HI	GCNGC	4 cut(s)	366, 431, 570, 816
FriOI	GRGCYC	1 cut(s)	825
Fsp4HI	GCNGC	4 cut(s)	366, 431, 570, 816
FspBI	CTAG	4 cut(s)	21, 71, 239, 605
GlaI	GCGC	1 cut(s)	562
GluI	GCNGC	4 cut(s)	366, 431, 570, 816
GsuI	CTGGAG	1 cut(s)	204
HaeIII	GGCC	3 cut(s)	495, 703, 823
HapII	CCGG	1 cut(s)	396
HhaI	GCGC	1 cut(s)	563
Hin1II	CATG	8 cut(s)	352, 455, 675, 698, 795, 815, 898, 917
Hin6I	GCGC	1 cut(s)	561
HinP1I	GCGC	1 cut(s)	561
HpaII	CCGG	1 cut(s)	396
HphI	GGTGA	2 cut(s)	52, 226
Hpy166II	GTNNAC	1 cut(s)	589
Hpy188I	TCNGA	1 cut(s)	336
Hpy188III	TCNNGA	2 cut(s)	173, 695
Hpy8I	GTNNAC	1 cut(s)	589
Hpy99I	CGWCG	1 cut(s)	380
HpyAV	CCTTC	4 cut(s)	73, 259, 278, 316
HpyCH4III	ACNGT	4 cut(s)	144, 256, 412, 941
HpyCH4IV	ACGT	1 cut(s)	900
HpyCH4V	TGCA	8 cut(s)	91, 539, 572, 682, 884, 894, 913, 920
HpyF10VI	GCNNNNNNNGC	4 cut(s)	371, 569, 812, 854
HpyF3I	CTNAG	1 cut(s)	434
HpySE526I	ACGT	1 cut(s)	900
Hsp92II	CATG	8 cut(s)	352, 455, 675, 698, 795, 815, 898, 917
HspAI	GCGC	1 cut(s)	561
KspI	CCGCGG	1 cut(s)	819
Kzo9I	GATC	5 cut(s)	23, 369, 508, 624, 639
LmnI	GCTCC	3 cut(s)	207, 352, 398
Lsp1109I	GCAGC	2 cut(s)	442, 556
LweI	GCATC	7 cut(s)	78, 463, 526, 548, 677, 900, 907
MaeI	CTAG	4 cut(s)	21, 71, 239, 605
MaeII	ACGT	1 cut(s)	900
MaeIII	GTNAC	5 cut(s)	232, 406, 607, 721, 865
MalI	GATC	5 cut(s)	25, 371, 510, 626, 641
MboI	GATC	5 cut(s)	23, 369, 508, 624, 639
MboII	GAAGA	6 cut(s)	95, 106, 157, 496, 728, 731
MfeI	CAATTG	2 cut(s)	78, 858
MflI	RGATCY	1 cut(s)	23
MhlI	GDGCHC	2 cut(s)	20, 825
MlsI	TGGCCA	1 cut(s)	495
MluCI	AATT	4 cut(s)	78, 263, 648, 858
MluNI	TGGCCA	1 cut(s)	495
Mox20I	TGGCCA	1 cut(s)	495
Mph1103I	ATGCAT	2 cut(s)	541, 915
MscI	TGGCCA	1 cut(s)	495
MseI	TTAA	4 cut(s)	159, 260, 441, 878
MslI	CAYNNNNRTG	2 cut(s)	673, 889
Msp20I	TGGCCA	1 cut(s)	495
MspA1I	CMGCKG	2 cut(s)	433, 818
MspI	CCGG	1 cut(s)	396
MspR9I	CCNGG	3 cut(s)	566, 615, 645
MunI	CAATTG	2 cut(s)	78, 858
MvaI	CCWGG	3 cut(s)	566, 615, 645
MvnI	CGCG	1 cut(s)	818
MwoI	GCNNNNNNNGC	4 cut(s)	371, 569, 812, 854
NdeII	GATC	5 cut(s)	23, 369, 508, 624, 639
NlaIII	CATG	8 cut(s)	352, 455, 675, 698, 795, 815, 898, 917
NlaIV	GGNNCC	3 cut(s)	333, 822, 823
NmeAIII	GCCGAG	1 cut(s)	416
NmuCI	GTSAC	5 cut(s)	232, 406, 607, 721, 865
NsiI	ATGCAT	2 cut(s)	541, 915
OliI	CACNNNNGTG	1 cut(s)	889
PagI	TCATGA	1 cut(s)	694
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PkrI	GCNGC	4 cut(s)	367, 432, 571, 817
Ple19I	CGATCG	1 cut(s)	372
Psp1406I	AACGTT	1 cut(s)	900
Psp6I	CCWGG	3 cut(s)	564, 613, 643
PspGI	CCWGG	3 cut(s)	564, 613, 643
PspN4I	GGNNCC	3 cut(s)	333, 822, 823
PspOMI	GGGCCC	1 cut(s)	821
PspPI	GGNCC	2 cut(s)	821, 822
PsuI	RGATCY	1 cut(s)	23
PvuI	CGATCG	1 cut(s)	372
PvuII	CAGCTG	1 cut(s)	433
RgaI	GCGATCGC	1 cut(s)	372
RseI	CAYNNNNRTG	2 cut(s)	673, 889
SacII	CCGCGG	1 cut(s)	819
SaqAI	TTAA	4 cut(s)	159, 260, 441, 878
SatI	GCNGC	4 cut(s)	366, 431, 570, 816
Sau3AI	GATC	5 cut(s)	23, 369, 508, 624, 639
Sau96I	GGNCC	2 cut(s)	821, 822
ScrFI	CCNGG	3 cut(s)	566, 615, 645
SduI	GDGCHC	2 cut(s)	20, 825
SfaAI	GCGATCGC	1 cut(s)	372
SfaNI	GCATC	7 cut(s)	78, 463, 526, 548, 677, 900, 907
Sfr303I	CCGCGG	1 cut(s)	819
SgfI	GCGATCGC	1 cut(s)	372
SgrBI	CCGCGG	1 cut(s)	819
SmiMI	CAYNNNNRTG	2 cut(s)	673, 889
SpeI	ACTAGT	1 cut(s)	604
Sse9I	AATT	4 cut(s)	78, 263, 648, 858
SsiI	CCGC	8 cut(s)	181, 193, 365, 661, 801, 816, 818, 853
SspMI	CTAG	4 cut(s)	21, 71, 239, 605
StyD4I	CCNGG	3 cut(s)	564, 613, 643
StyI	CCWWGG	1 cut(s)	887
TaaI	ACNGT	4 cut(s)	144, 256, 412, 941
TaiI	ACGT	1 cut(s)	903
TaqI	TCGA	3 cut(s)	174, 378, 507
TasI	AATT	4 cut(s)	78, 263, 648, 858
TauI	GCSGC	2 cut(s)	368, 818
Tru1I	TTAA	4 cut(s)	159, 260, 441, 878
Tru9I	TTAA	4 cut(s)	159, 260, 441, 878
TscAI	CASTG	1 cut(s)	147
TseFI	GTSAC	5 cut(s)	232, 406, 607, 721, 865
TseI	GCWGC	2 cut(s)	430, 569
Tsp45I	GTSAC	5 cut(s)	232, 406, 607, 721, 865
TspDTI	ATGAA	5 cut(s)	454, 702, 780, 911, 948
TspRI	CASTG	1 cut(s)	147
XapI	RAATTY	1 cut(s)	263
XcmI	CCANNNNNNNNNTGG	1 cut(s)	325
XspI	CTAG	4 cut(s)	21, 71, 239, 605
Zsp2I	ATGCAT	2 cut(s)	541, 915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.