Rh6DG468100

Rab proteins geranylgeranyltransferase component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0002158
Physical Location & Seq
Reverse (-)
63572785 .. 63579055
6271 bp
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UTR
Exon/CDS
Intron
Rh6DG468100.1

Sequence Viewer

Length: 825 bp
ATGGAGGCGGTGATCGTCGTCGATGTTCTGCGCCGAGCCGGAGCTGATGTCACTGTGGCTTCTGTGGAGAAGCAGCTGAAGGGAGGGATGTCAGGTGCTACCAATCTTAAGAATATTGAAAGCTATGAACATATACTCGAGACTCTTTTTCATCTGTGCCATGGTTGTGTGTATATGGTACATTGGTTTCTAGATGCCAATGGAGCTTTTCTTTATCCTATGTATGGTCATGAGGAGTTAGAACAAGCCTTTTGCCGCCGTGCTGCTGTTAAAGGTTGTCTTCAAGTTCTGCGAAGGCCAGTGATTTCTCTGCTTATGGACAAGGATAGTGGGCAATATAAGGGTGTTAGATTGGTTTCAGGTCAGGATTTGTTCAGTCATCCCTTCACGGTGCCACTGCCATCAGCTTCATCTCCACCAGTCCTTCCAAAAGAAAGTCTGAAAGTTGGCGCATCTGATTTGGAACACTTGGTGCTTAACTGCCGGTCATTGAAGTCTATTCTGGTGCACCATAAAACGCTAAAGCAGATATTGCCTCTGATGCGAAAGCGGACTAGAAGATTTGTGAAAAGTGGGTTACTGGAGAATATGGTGGAGGTTTCAGATTTAGCTTGGATCACCGACATTGGGGGTGTGGCGCTCTCGGCTATTTCAACCCTCAAGAACTTGAGCTTGGAAGAGCTGTCCAGAATGTCGGACCGCACCATTGTTGCTCTTGCTAAGAATTGCCCCGACTTGGAGGTCCTCGACTTAACTCGATGTGGAATAACTCCAGCTGTTTGTGTTTGTATGCCGGTCAGTGAAGTCTTTCGTGCTGCATCATGA

Protein Analysis

274

Amino Acids

30.2

Weight (kDa)

8.35

Isoelectric Point (pI)

50.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDI PF00996 68 - 118 5.1e-07 GDP dissociation inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 740
AccB1I GGYRCC 1 cut(s) 391
AciI CCGC 4 cut(s) 8, 256, 550, 700
AclWI GGATC 1 cut(s) 623
AcuI CTGAAG 1 cut(s) 98
AdeI CACNNNGTG 1 cut(s) 472
AfaI GTAC 1 cut(s) 180
AfiI CCNNNNNNNGG 3 cut(s) 224, 627, 736
AflII CTTAAG 1 cut(s) 107
AgsI TTSAA 4 cut(s) 119, 284, 493, 654
AjuI GAANNNNNNNTTGG 2 cut(s) 656, 688
AluBI AGCT 9 cut(s) 44, 76, 123, 206, 407, 611, 672, 682, 776
AluI AGCT 9 cut(s) 44, 76, 123, 206, 407, 611, 672, 682, 776
Alw21I GWGCWC 1 cut(s) 510
Alw26I GTCTC 1 cut(s) 134
Alw44I GTGCAC 1 cut(s) 506
AlwI GGATC 1 cut(s) 623
Ama87I CYCGRG 1 cut(s) 137
AoxI GGCC 1 cut(s) 296
ApaLI GTGCAC 1 cut(s) 506
ApeKI GCWGC 3 cut(s) 73, 263, 815
Asp700I GAANNNNTTC 1 cut(s) 807
AspLEI GCGC 3 cut(s) 33, 452, 640
AspS9I GGNCC 2 cut(s) 697, 742
AsuHPI GGTGA 2 cut(s) 22, 610
AvaI CYCGRG 1 cut(s) 137
AvaII GGWCC 2 cut(s) 697, 742
BaeGI GKGCMC 1 cut(s) 510
BaeI ACNNNNGTAYC 2 cut(s) 170, 203
BanI GGYRCC 1 cut(s) 391
BbsI GAAGAC 1 cut(s) 272
Bbv12I GWGCWC 1 cut(s) 510
BbvI GCAGC 3 cut(s) 85, 250, 802
BccI CCATC 1 cut(s) 409
BceAI ACGGC 1 cut(s) 243
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 2 cut(s) 191, 555
BfoI RGCGCY 1 cut(s) 641
BfrI CTTAAG 1 cut(s) 107
BisI GCNGC 4 cut(s) 74, 256, 264, 816
BlsI GCNGC 4 cut(s) 75, 257, 265, 817
Bme18I GGWCC 2 cut(s) 697, 742
BmeT110I CYCGRG 1 cut(s) 137
BmgT120I GGNCC 2 cut(s) 697, 742
BmiI GGNNCC 1 cut(s) 393
BmsI GCATC 3 cut(s) 184, 461, 531
BpiI GAAGAC 1 cut(s) 272
BpmI CTGGAG 2 cut(s) 602, 756
BpuEI CTTGAG 2 cut(s) 644, 688
BsaJI CCNNGG 1 cut(s) 160
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
Bsc4I CCNNNNNNNGG 3 cut(s) 224, 627, 736
Bse118I RCCGGY 2 cut(s) 483, 793
Bse1I ACTGG 3 cut(s) 299, 419, 585
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 2 cut(s) 93, 379
BseLI CCNNNNNNNGG 3 cut(s) 224, 627, 736
BseNI ACTGG 3 cut(s) 299, 419, 585
BseRI GAGGAG 1 cut(s) 248
BseSI GKGCMC 1 cut(s) 510
BseXI GCAGC 3 cut(s) 85, 250, 802
BshFI GGCC 1 cut(s) 298
BshNI GGYRCC 1 cut(s) 391
BsiHKAI GWGCWC 1 cut(s) 510
BsiHKCI CYCGRG 1 cut(s) 137
BsiSI CCGG 3 cut(s) 39, 484, 794
BslI CCNNNNNNNGG 3 cut(s) 224, 627, 736
BsmAI GTCTC 1 cut(s) 134
BsnI GGCC 1 cut(s) 298
BsoBI CYCGRG 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 510
Bsp143I GATC 2 cut(s) 12, 615
Bsp19I CCATGG 1 cut(s) 160
BspACI CCGC 4 cut(s) 8, 256, 550, 700
BspANI GGCC 1 cut(s) 298
BspHI TCATGA 2 cut(s) 229, 821
BspLI GGNNCC 1 cut(s) 393
BspPI GGATC 1 cut(s) 623
BspQI GCTCTTC 1 cut(s) 672
BspT107I GGYRCC 1 cut(s) 391
BspTI CTTAAG 1 cut(s) 107
BsrFI RCCGGY 2 cut(s) 483, 793
BsrI ACTGG 3 cut(s) 299, 419, 585
BssAI RCCGGY 2 cut(s) 483, 793
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 2 cut(s) 12, 615
BssT1I CCWWGG 1 cut(s) 160
Bst4CI ACNGT 2 cut(s) 55, 391
Bst6I CTCTTC 1 cut(s) 672
BstAFI CTTAAG 1 cut(s) 107
BstAPI GCANNNNNTGC 1 cut(s) 532
BstDEI CTNAG 1 cut(s) 720
BstDSI CCRYGG 1 cut(s) 160
BstF5I GGATG 2 cut(s) 93, 379
BstH2I RGCGCY 1 cut(s) 641
BstHHI GCGC 3 cut(s) 33, 452, 640
BstKTI GATC 2 cut(s) 15, 618
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 2 cut(s) 12, 615
BstMWI GCNNNNNNNGC 4 cut(s) 203, 532, 541, 644
BstSLI GKGCMC 1 cut(s) 510
BstV1I GCAGC 3 cut(s) 85, 250, 802
BstV2I GAAGAC 1 cut(s) 272
BsuRI GGCC 1 cut(s) 298
BtgI CCRYGG 1 cut(s) 160
BtsCI GGATG 2 cut(s) 93, 379
BtsI GCAGTG 1 cut(s) 395
BtsIMutI CAGTG 4 cut(s) 51, 306, 395, 805
CciI TCATGA 2 cut(s) 229, 821
CfoI GCGC 3 cut(s) 33, 452, 640
Cfr10I RCCGGY 2 cut(s) 483, 793
Cfr13I GGNCC 2 cut(s) 697, 742
CpoI CGGWCCG 1 cut(s) 697
Csp6I GTAC 1 cut(s) 179
CspCI CAANNNNNGTGG 2 cut(s) 310, 345
CspI CGGWCCG 1 cut(s) 697
CviAII CATG 3 cut(s) 161, 230, 822
CviQI GTAC 1 cut(s) 179
DdeI CTNAG 1 cut(s) 720
DpnI GATC 2 cut(s) 14, 617
DpnII GATC 2 cut(s) 12, 615
DraIII CACNNNGTG 1 cut(s) 472
DrdI GACNNNNNNGTC 1 cut(s) 740
DseDI GACNNNNNNGTC 1 cut(s) 740
Eam1104I CTCTTC 1 cut(s) 672
EarI CTCTTC 1 cut(s) 672
Eco130I CCWWGG 1 cut(s) 160
Eco47I GGWCC 2 cut(s) 697, 742
Eco57I CTGAAG 1 cut(s) 98
Eco88I CYCGRG 1 cut(s) 137
EcoO109I RGGNCCY 1 cut(s) 742
EcoT14I CCWWGG 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 160
FaeI CATG 3 cut(s) 164, 233, 825
FalI AAGNNNNNCTT 2 cut(s) 264, 296
FatI CATG 3 cut(s) 160, 229, 821
Fnu4HI GCNGC 4 cut(s) 74, 256, 264, 816
FokI GGATG 2 cut(s) 100, 366
Fsp4HI GCNGC 4 cut(s) 74, 256, 264, 816
FspBI CTAG 2 cut(s) 191, 555
GlaI GCGC 3 cut(s) 32, 451, 639
GluI GCNGC 4 cut(s) 74, 256, 264, 816
GsuI CTGGAG 2 cut(s) 602, 756
HaeII RGCGCY 1 cut(s) 641
HaeIII GGCC 1 cut(s) 298
HapII CCGG 3 cut(s) 39, 484, 794
HhaI GCGC 3 cut(s) 33, 452, 640
Hin1II CATG 3 cut(s) 164, 233, 825
Hin6I GCGC 3 cut(s) 31, 450, 638
HinP1I GCGC 3 cut(s) 31, 450, 638
HinfI GANTC 1 cut(s) 142
HpaII CCGG 3 cut(s) 39, 484, 794
HphI GGTGA 2 cut(s) 22, 610
Hpy166II GTNNAC 1 cut(s) 508
Hpy188I TCNGA 5 cut(s) 441, 457, 540, 604, 697
Hpy188III TCNNGA 7 cut(s) 139, 191, 230, 365, 661, 687, 822
Hpy8I GTNNAC 1 cut(s) 508
Hpy99I CGWCG 2 cut(s) 20, 23
HpyAV CCTTC 4 cut(s) 73, 288, 394, 434
HpyCH4III ACNGT 2 cut(s) 55, 391
HpyCH4V TGCA 2 cut(s) 508, 818
HpyF10VI GCNNNNNNNGC 4 cut(s) 203, 532, 541, 644
HpyF3I CTNAG 1 cut(s) 720
Hsp92II CATG 3 cut(s) 164, 233, 825
HspAI GCGC 3 cut(s) 31, 450, 638
Kzo9I GATC 2 cut(s) 12, 615
LguI GCTCTTC 1 cut(s) 672
LmnI GCTCC 2 cut(s) 41, 203
Lsp1109I GCAGC 3 cut(s) 85, 250, 802
LweI GCATC 3 cut(s) 184, 461, 531
MaeI CTAG 2 cut(s) 191, 555
MaeIII GTNAC 2 cut(s) 49, 576
MalI GATC 2 cut(s) 14, 617
MboI GATC 2 cut(s) 12, 615
MboII GAAGA 3 cut(s) 272, 570, 689
MhlI GDGCHC 1 cut(s) 510
MluCI AATT 1 cut(s) 724
MlyI GAGTC 1 cut(s) 136
MmeI TCCRAC 1 cut(s) 675
MnlI CCTC 7 cut(s) 77, 226, 546, 589, 668, 733, 755
MroXI GAANNNNTTC 1 cut(s) 807
MseI TTAA 4 cut(s) 108, 270, 477, 752
MslI CAYNNNNRTG 1 cut(s) 165
MspA1I CMGCKG 2 cut(s) 76, 776
MspCI CTTAAG 1 cut(s) 107
MspI CCGG 3 cut(s) 39, 484, 794
MwoI GCNNNNNNNGC 4 cut(s) 203, 532, 541, 644
NcoI CCATGG 1 cut(s) 160
NdeII GATC 2 cut(s) 12, 615
NlaIII CATG 3 cut(s) 164, 233, 825
NlaIV GGNNCC 1 cut(s) 393
NmeAIII GCCGAG 2 cut(s) 59, 623
NmuCI GTSAC 1 cut(s) 49
PaeR7I CTCGAG 1 cut(s) 137
PagI TCATGA 2 cut(s) 229, 821
PciSI GCTCTTC 1 cut(s) 672
PdmI GAANNNNTTC 1 cut(s) 807
PkrI GCNGC 4 cut(s) 75, 257, 265, 817
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
PpuMI RGGWCCY 1 cut(s) 742
Psp5II RGGWCCY 1 cut(s) 742
PspN4I GGNNCC 1 cut(s) 393
PspPI GGNCC 2 cut(s) 697, 742
PspPPI RGGWCCY 1 cut(s) 742
PvuII CAGCTG 2 cut(s) 76, 776
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
RseI CAYNNNNRTG 1 cut(s) 165
Rsr2I CGGWCCG 1 cut(s) 697
RsrII CGGWCCG 1 cut(s) 697
SapI GCTCTTC 1 cut(s) 672
SaqAI TTAA 4 cut(s) 108, 270, 477, 752
SatI GCNGC 4 cut(s) 74, 256, 264, 816
Sau3AI GATC 2 cut(s) 12, 615
Sau96I GGNCC 2 cut(s) 697, 742
SchI GAGTC 1 cut(s) 136
SduI GDGCHC 1 cut(s) 510
SfaNI GCATC 3 cut(s) 184, 461, 531
Sfr274I CTCGAG 1 cut(s) 137
SinI GGWCC 2 cut(s) 697, 742
SlaI CTCGAG 1 cut(s) 137
SmiMI CAYNNNNRTG 1 cut(s) 165
SmlI CTYRAG 4 cut(s) 107, 137, 659, 667
SmoI CTYRAG 4 cut(s) 107, 137, 659, 667
Sse9I AATT 1 cut(s) 724
SsiI CCGC 4 cut(s) 8, 256, 550, 700
SspI AATATT 1 cut(s) 115
SspMI CTAG 2 cut(s) 191, 555
StyI CCWWGG 1 cut(s) 160
TaaI ACNGT 2 cut(s) 55, 391
TaqI TCGA 4 cut(s) 21, 138, 747, 757
TasI AATT 1 cut(s) 724
TauI GCSGC 1 cut(s) 258
Tru1I TTAA 4 cut(s) 108, 270, 477, 752
Tru9I TTAA 4 cut(s) 108, 270, 477, 752
TscAI CASTG 4 cut(s) 58, 306, 402, 805
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 3 cut(s) 73, 263, 815
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 3 cut(s) 140, 141, 399
TspRI CASTG 4 cut(s) 58, 306, 402, 805
Vha464I CTTAAG 1 cut(s) 107
VneI GTGCAC 1 cut(s) 506
VpaK11BI GGWCC 2 cut(s) 697, 742
XbaI TCTAGA 1 cut(s) 190
XhoI CTCGAG 1 cut(s) 137
XmnI GAANNNNTTC 1 cut(s) 807
XspI CTAG 2 cut(s) 191, 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.