Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8475729.1

Orthogroup ID

OG0002158

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2075

Gene Structure 2075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8475729.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

atggaggcagtgatcgccgtcgctgttccacaccgagccggagctgatgtcactgtggcttttgtggagaagaagctgagggttgaggcttgtgatggggttaagatcatcgctgaagctttggtttcggactgtggccaaagctccttcgatctcattactctacct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0006081 GO:0006082 GO:0006089 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009438 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019172 GO:0019249 GO:0019752 GO:0030054 GO:0031090 GO:0032787 GO:0042180 GO:0042182 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046185 GO:0046394 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051596 GO:0055044 GO:0061727 GO:0065007 GO:0071704 GO:0071944 GO:0072330 GO:0080134 GO:0080135 GO:0098588 GO:0098805 GO:1900407 GO:1900409 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902882 GO:1902884

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

56

Amino Acids

5.85

Weight (kDa)

4.75

Isoelectric Point (pI)

36.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002158)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g10710
rosa_chinensis	RchiOBHm_Chr1g0352931 RchiOBHm_Chr1g0379931 RchiOBHm_Chr2g0127521 RchiOBHm_Chr5g0077921 RchiOBHm_Chr6g0254011 RchiOBHm_Chr7g0224991
rosa_laevigata	RLG00000010747 RLG00000036727
rosa_multiflora	Rmu_co8264081.1_g000001 Rmu_co8475729.1_g000001 Rmu_sc0000512.1_g000010 Rmu_sc0002563.1_g000056 Rmu_sc0003651.1_g000010 Rmu_sc0008382.1_g000016 Rmu_sc0011010.1_g000011 Rmu_sc0014844.1_g000012 Rmu_sc0017063.1_g000001 Rmu_sc0019512.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012710 Rroxscaffold_7G00161280
rosa_rugosa	Rorug01G0236000 Rorug02G0221700
rosa_samantha	Rh1BG320400 Rh1CG044300 Rh1CG334400 Rh1DG351000 Rh2AG096900 Rh2AG182700 Rh2BG335100 Rh2CG313300 Rh2CG351300 Rh2DG352700 Rh2DG390400 Rh3BG073400 Rh4CG209000 Rh5AG316800 Rh5AG511900 Rh6BG273400 Rh6BG434200 Rh6DG468100
rosa_wichuraiana	Rw2G026410 Rw4G021840 Rw6G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	136
AcuI	CTGAAG	1 cut(s)	135
AluBI	AGCT	4 cut(s)	44, 76, 119, 144
AluI	AGCT	4 cut(s)	44, 76, 119, 144
AoxI	GGCC	1 cut(s)	136
BalI	TGGCCA	1 cut(s)	138
BbvCI	CCTCAGC	1 cut(s)	77
BccI	CCATC	1 cut(s)	89
BceAI	ACGGC	1 cut(s)	2
Bpu10I	CCTNAGC	1 cut(s)	77
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
BseMII	CTCAG	1 cut(s)	68
BshFI	GGCC	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	39
BsnI	GGCC	1 cut(s)	138
Bsp143I	GATC	3 cut(s)	12, 105, 151
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	1 cut(s)	69
BssMI	GATC	3 cut(s)	12, 105, 151
Bst4CI	ACNGT	2 cut(s)	55, 134
BstDEI	CTNAG	1 cut(s)	77
BstKTI	GATC	3 cut(s)	15, 108, 154
BstMBI	GATC	3 cut(s)	12, 105, 151
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BsuRI	GGCC	1 cut(s)	138
BtgZI	GCGATG	1 cut(s)	94
BtsI	GCAGTG	1 cut(s)	15
BtsIMutI	CAGTG	2 cut(s)	15, 51
CviJI	RGCY	8 cut(s)	38, 44, 59, 76, 89, 119, 138, 144
CviKI_1	RGCY	8 cut(s)	38, 44, 59, 76, 89, 119, 138, 144
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	3 cut(s)	14, 107, 153
DpnII	GATC	3 cut(s)	12, 105, 151
EaeI	YGGCCR	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	1 cut(s)	39
HindIII	AAGCTT	1 cut(s)	117
HpaII	CCGG	1 cut(s)	39
Hpy188I	TCNGA	1 cut(s)	130
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	2 cut(s)	55, 134
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	1 cut(s)	77
Kzo9I	GATC	3 cut(s)	12, 105, 151
LmnI	GCTCC	2 cut(s)	41, 149
LpnPI	CCDG	1 cut(s)	52
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	3 cut(s)	14, 107, 153
MboI	GATC	3 cut(s)	12, 105, 151
MboII	GAAGA	1 cut(s)	82
MlsI	TGGCCA	1 cut(s)	138
MluNI	TGGCCA	1 cut(s)	138
MnlI	CCTC	2 cut(s)	72, 79
Mox20I	TGGCCA	1 cut(s)	138
MscI	TGGCCA	1 cut(s)	138
MseI	TTAA	1 cut(s)	102
Msp20I	TGGCCA	1 cut(s)	138
MspI	CCGG	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeII	GATC	3 cut(s)	12, 105, 151
NmuCI	GTSAC	1 cut(s)	49
SaqAI	TTAA	1 cut(s)	102
Sau3AI	GATC	3 cut(s)	12, 105, 151
SetI	ASST	4 cut(s)	46, 78, 121, 146
SgeI	CNNG	3 cut(s)	47, 51, 102
TaaI	ACNGT	2 cut(s)	55, 134
TaqI	TCGA	1 cut(s)	150
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	2 cut(s)	15, 58
TseFI	GTSAC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	49
TspRI	CASTG	2 cut(s)	15, 58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.