RLG00000010747

F-box LRR-repeat protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002158
Physical Location & Seq
Forward (+)
4065814 .. 4068817
3004 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010747

Sequence Viewer

Length: 870 bp
ATGTTAAATTGGAGAAGGAGTATTAATGATTCCGTACTGATTTCCCTTACAAGTATAGCAGACAACTTGACACATTTGGATTTGGGAGGTTGTATTAAGGTCTCGGACGAAGCCCTCGAAGCAATTGGGTCTTCCAGTTCTATTAACTATTTGAATTTGGAATGCTGTCTTCTGGTTACGGATCGCGGATCGGGTTTTCTAGGAAATGGGTCTACCTCAAAAACCCTCAAGACATTGATCCTTAATTGGATCACCAGCATTACTGATGTTGGGGTCTCGCATTTGCAGAAAATGCATTGCTTGGAGCACCTGAGTTTGGCTGACTGTTCGCAACCAGAGATCACCGATGTTGGAGGTGTCGCAATCTCGGCCATTTTAACCCTAAAAAAATTGAGCTTGTGCAGGCTTGGCCGAGTGTCAGACCGCACCATTGTTGCTCTAGCTCAGAATTGCCCCAACTTGGAGACGGTTGATGCAAGTGACTGTGGAATAACTGGAGCTGTTGGCGCATCTGATTTGGAACACTTGGTGCTTAGCTGCCGGTCATTGAAGTCTATTCTGGTGCACCATAAAACGCTAAAGCAGATATTGCCTCTGATGCGAAAGCGGACTAGAAGATTTGTGAAAAGTGGGTTACTGGAGAATATGGTGGGGGTTTCAGATTTAGCTTGGATCACCGACATTGGGGGTGTGGCGCTCTCGGCTATTTCAACCCTCAAGAACTTGAGCTTGGAAGAGCTGTTCAGAATGTCGGACCGCACCATTGTTGCTCTTGCTAAGAATTGCCCCGACTTGGAGGTCCTCGACTTAACTCGATGTGGAATAACTCCAGCTGGTATTCGTGCATTTTCTAGTCATAAGTGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

290

Amino Acids

31.15

Weight (kDa)

7.54

Isoelectric Point (pI)

32.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 6 - 103 7.8e-09 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 797
AccI GTMKAC 1 cut(s) 212
AccII CGCG 1 cut(s) 186
AciI CCGC 4 cut(s) 186, 424, 607, 757
AclWI GGATC 5 cut(s) 189, 196, 232, 257, 680
AcoI YGGCCR 2 cut(s) 369, 409
AcsI RAATTY 1 cut(s) 154
AdeI CACNNNGTG 1 cut(s) 529
AfaI GTAC 1 cut(s) 36
AfiI CCNNNNNNNGG 4 cut(s) 316, 460, 684, 793
AgsI TTSAA 3 cut(s) 154, 550, 711
AjuI GAANNNNNNNTTGG 2 cut(s) 713, 745
AloI GAACNNNNNNTCC 2 cut(s) 725, 757
AluBI AGCT 8 cut(s) 396, 443, 500, 537, 668, 729, 739, 833
AluI AGCT 8 cut(s) 396, 443, 500, 537, 668, 729, 739, 833
Alw21I GWGCWC 2 cut(s) 309, 567
Alw26I GTCTC 3 cut(s) 106, 280, 458
Alw44I GTGCAC 1 cut(s) 563
AlwI GGATC 5 cut(s) 189, 196, 232, 257, 680
AoxI GGCC 2 cut(s) 369, 409
ApaLI GTGCAC 1 cut(s) 563
ApeKI GCWGC 1 cut(s) 537
ApoI RAATTY 1 cut(s) 154
AseI ATTAAT 1 cut(s) 24
AspLEI GCGC 2 cut(s) 509, 697
AspS9I GGNCC 2 cut(s) 754, 799
AsuHPI GGTGA 3 cut(s) 244, 334, 667
AvaII GGWCC 2 cut(s) 754, 799
BaeGI GKGCMC 1 cut(s) 567
BbsI GAAGAC 2 cut(s) 123, 161
Bbv12I GWGCWC 2 cut(s) 309, 567
BbvI GCAGC 1 cut(s) 524
BcoDI GTCTC 3 cut(s) 106, 280, 458
BfaI CTAG 4 cut(s) 200, 440, 612, 852
BfoI RGCGCY 1 cut(s) 698
BisI GCNGC 1 cut(s) 538
BlpI GCTNAGC 1 cut(s) 533
BlsI GCNGC 1 cut(s) 539
Bme18I GGWCC 2 cut(s) 754, 799
BmgT120I GGNCC 2 cut(s) 754, 799
BmsI GCATC 3 cut(s) 463, 518, 588
BpiI GAAGAC 2 cut(s) 123, 161
BpmI CTGGAG 3 cut(s) 516, 659, 813
Bpu1102I GCTNAGC 1 cut(s) 533
BpuEI CTTGAG 3 cut(s) 212, 701, 745
BsaI GGTCTC 2 cut(s) 106, 280
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 4 cut(s) 316, 460, 684, 793
Bse118I RCCGGY 1 cut(s) 540
Bse1I ACTGG 3 cut(s) 135, 499, 642
Bse3DI GCAATG 1 cut(s) 295
BseLI CCNNNNNNNGG 4 cut(s) 316, 460, 684, 793
BseMI GCAATG 1 cut(s) 295
BseMII CTCAG 2 cut(s) 302, 458
BseNI ACTGG 3 cut(s) 135, 499, 642
BseSI GKGCMC 1 cut(s) 567
BseXI GCAGC 1 cut(s) 524
BsgI GTGCAG 1 cut(s) 421
Bsh1236I CGCG 1 cut(s) 186
BshFI GGCC 2 cut(s) 371, 411
BsiHKAI GWGCWC 2 cut(s) 309, 567
BsiSI CCGG 1 cut(s) 541
BslI CCNNNNNNNGG 4 cut(s) 316, 460, 684, 793
BsmAI GTCTC 3 cut(s) 106, 280, 458
BsmBI CGTCTC 1 cut(s) 458
BsmI GAATGC 1 cut(s) 167
BsnI GGCC 2 cut(s) 371, 411
Bso31I GGTCTC 2 cut(s) 106, 280
Bsp1286I GDGCHC 2 cut(s) 309, 567
Bsp143I GATC 6 cut(s) 181, 188, 237, 249, 339, 672
Bsp1720I GCTNAGC 1 cut(s) 533
BspACI CCGC 4 cut(s) 186, 424, 607, 757
BspANI GGCC 2 cut(s) 371, 411
BspCNI CTCAG 2 cut(s) 303, 457
BspFNI CGCG 1 cut(s) 186
BspPI GGATC 5 cut(s) 189, 196, 232, 257, 680
BspQI GCTCTTC 1 cut(s) 729
BspTNI GGTCTC 2 cut(s) 106, 280
BsrDI GCAATG 1 cut(s) 295
BsrFI RCCGGY 1 cut(s) 540
BsrI ACTGG 3 cut(s) 135, 499, 642
BssAI RCCGGY 1 cut(s) 540
BssMI GATC 6 cut(s) 181, 188, 237, 249, 339, 672
Bst4CI ACNGT 3 cut(s) 326, 469, 485
Bst6I CTCTTC 1 cut(s) 729
BstAPI GCANNNNNTGC 2 cut(s) 292, 589
BstC8I GCNNGC 1 cut(s) 404
BstDEI CTNAG 4 cut(s) 311, 444, 533, 777
BstFNI CGCG 1 cut(s) 186
BstH2I RGCGCY 1 cut(s) 698
BstHHI GCGC 2 cut(s) 509, 697
BstKTI GATC 6 cut(s) 184, 191, 240, 252, 342, 675
BstMAI GTCTC 3 cut(s) 106, 280, 458
BstMBI GATC 6 cut(s) 181, 188, 237, 249, 339, 672
BstMWI GCNNNNNNNGC 8 cut(s) 119, 292, 368, 408, 506, 589, 598, 701
BstSLI GKGCMC 1 cut(s) 567
BstUI CGCG 1 cut(s) 186
BstV1I GCAGC 1 cut(s) 524
BstV2I GAAGAC 2 cut(s) 123, 161
BsuRI GGCC 2 cut(s) 371, 411
Cac8I GCNNGC 1 cut(s) 404
CfoI GCGC 2 cut(s) 509, 697
Cfr10I RCCGGY 1 cut(s) 540
Cfr13I GGNCC 2 cut(s) 754, 799
CpoI CGGWCCG 1 cut(s) 754
Csp6I GTAC 1 cut(s) 35
CspI CGGWCCG 1 cut(s) 754
CviQI GTAC 1 cut(s) 35
DdeI CTNAG 4 cut(s) 311, 444, 533, 777
DpnI GATC 6 cut(s) 183, 190, 239, 251, 341, 674
DpnII GATC 6 cut(s) 181, 188, 237, 249, 339, 672
DraIII CACNNNGTG 1 cut(s) 529
DrdI GACNNNNNNGTC 1 cut(s) 797
DseDI GACNNNNNNGTC 1 cut(s) 797
EaeI YGGCCR 2 cut(s) 369, 409
Eam1104I CTCTTC 1 cut(s) 729
EarI CTCTTC 1 cut(s) 729
Eco31I GGTCTC 2 cut(s) 106, 280
Eco47I GGWCC 2 cut(s) 754, 799
EcoO109I RGGNCCY 1 cut(s) 799
EcoT22I ATGCAT 1 cut(s) 297
Esp3I CGTCTC 1 cut(s) 458
FaiI YATR 4 cut(s) 56, 570, 647, 858
FblI GTMKAC 1 cut(s) 212
Fnu4HI GCNGC 1 cut(s) 538
Fsp4HI GCNGC 1 cut(s) 538
FspBI CTAG 4 cut(s) 200, 440, 612, 852
GlaI GCGC 2 cut(s) 508, 696
GluI GCNGC 1 cut(s) 538
GsuI CTGGAG 3 cut(s) 516, 659, 813
HaeII RGCGCY 1 cut(s) 698
HaeIII GGCC 2 cut(s) 371, 411
HapII CCGG 1 cut(s) 541
HhaI GCGC 2 cut(s) 509, 697
Hin6I GCGC 2 cut(s) 507, 695
HinP1I GCGC 2 cut(s) 507, 695
HinfI GANTC 1 cut(s) 29
HpaII CCGG 1 cut(s) 541
HphI GGTGA 3 cut(s) 244, 334, 667
Hpy166II GTNNAC 2 cut(s) 213, 565
Hpy188I TCNGA 8 cut(s) 106, 421, 447, 514, 597, 661, 746, 754
Hpy188III TCNNGA 2 cut(s) 229, 718
Hpy8I GTNNAC 2 cut(s) 213, 565
HpyAV CCTTC 1 cut(s) 9
HpyCH4III ACNGT 3 cut(s) 326, 469, 485
HpyCH4V TGCA 6 cut(s) 286, 295, 402, 476, 565, 845
HpyF10VI GCNNNNNNNGC 8 cut(s) 119, 292, 368, 408, 506, 589, 598, 701
HpyF3I CTNAG 4 cut(s) 311, 444, 533, 777
HspAI GCGC 2 cut(s) 507, 695
Kzo9I GATC 6 cut(s) 181, 188, 237, 249, 339, 672
LguI GCTCTTC 1 cut(s) 729
LmnI GCTCC 2 cut(s) 304, 497
Lsp1109I GCAGC 1 cut(s) 524
LweI GCATC 3 cut(s) 463, 518, 588
MaeI CTAG 4 cut(s) 200, 440, 612, 852
MaeIII GTNAC 3 cut(s) 175, 479, 633
MalI GATC 6 cut(s) 183, 190, 239, 251, 341, 674
MboI GATC 6 cut(s) 181, 188, 237, 249, 339, 672
MboII GAAGA 4 cut(s) 123, 161, 627, 746
MfeI CAATTG 1 cut(s) 123
MhlI GDGCHC 2 cut(s) 309, 567
MluCI AATT 7 cut(s) 7, 123, 154, 244, 389, 448, 781
MmeI TCCRAC 2 cut(s) 331, 732
MnlI CCTC 9 cut(s) 80, 125, 226, 236, 347, 603, 725, 790, 812
Mph1103I ATGCAT 1 cut(s) 297
MseI TTAA 7 cut(s) 5, 24, 96, 144, 243, 377, 809
MspA1I CMGCKG 1 cut(s) 833
MspI CCGG 1 cut(s) 541
MunI CAATTG 1 cut(s) 123
Mva1269I GAATGC 1 cut(s) 167
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 8 cut(s) 119, 292, 368, 408, 506, 589, 598, 701
NdeII GATC 6 cut(s) 181, 188, 237, 249, 339, 672
NmeAIII GCCGAG 3 cut(s) 347, 437, 680
NmuCI GTSAC 1 cut(s) 479
NsiI ATGCAT 1 cut(s) 297
PciSI GCTCTTC 1 cut(s) 729
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PctI GAATGC 1 cut(s) 167
PfeI GAWTC 1 cut(s) 29
PkrI GCNGC 1 cut(s) 539
PpuMI RGGWCCY 1 cut(s) 799
PshBI ATTAAT 1 cut(s) 24
Psp5II RGGWCCY 1 cut(s) 799
PspPI GGNCC 2 cut(s) 754, 799
PspPPI RGGWCCY 1 cut(s) 799
PvuII CAGCTG 1 cut(s) 833
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
Rsr2I CGGWCCG 1 cut(s) 754
RsrII CGGWCCG 1 cut(s) 754
SapI GCTCTTC 1 cut(s) 729
SaqAI TTAA 7 cut(s) 5, 24, 96, 144, 243, 377, 809
SatI GCNGC 1 cut(s) 538
Sau3AI GATC 6 cut(s) 181, 188, 237, 249, 339, 672
Sau96I GGNCC 2 cut(s) 754, 799
SduI GDGCHC 2 cut(s) 309, 567
SfaNI GCATC 3 cut(s) 463, 518, 588
SinI GGWCC 2 cut(s) 754, 799
SmlI CTYRAG 3 cut(s) 227, 716, 724
SmoI CTYRAG 3 cut(s) 227, 716, 724
Sse9I AATT 7 cut(s) 7, 123, 154, 244, 389, 448, 781
SsiI CCGC 4 cut(s) 186, 424, 607, 757
SspMI CTAG 4 cut(s) 200, 440, 612, 852
TaaI ACNGT 3 cut(s) 326, 469, 485
TaqI TCGA 3 cut(s) 117, 804, 814
TasI AATT 7 cut(s) 7, 123, 154, 244, 389, 448, 781
TfiI GAWTC 1 cut(s) 29
Tru1I TTAA 7 cut(s) 5, 24, 96, 144, 243, 377, 809
Tru9I TTAA 7 cut(s) 5, 24, 96, 144, 243, 377, 809
TseFI GTSAC 1 cut(s) 479
TseI GCWGC 1 cut(s) 537
Tsp45I GTSAC 1 cut(s) 479
TspGWI ACGGA 2 cut(s) 22, 194
VneI GTGCAC 1 cut(s) 563
VpaK11BI GGWCC 2 cut(s) 754, 799
VspI ATTAAT 1 cut(s) 24
XapI RAATTY 1 cut(s) 154
XmiI GTMKAC 1 cut(s) 212
XspI CTAG 4 cut(s) 200, 440, 612, 852
Zsp2I ATGCAT 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.