Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002158

Physical Location & Seq

Genomic Coordinates Forward (+)

45397504 .. 45405527

Gene Structure 8024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG320400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCTGAAACAGTAGAGAATTACCAGAGAATGGAAGAGAACGATACTGGAGATGGCCAAGAAAGAGCGGATCATGAAGTAGCCGATGATTTTGAGGCCGGAGCGTTGCCGGAAAAGGTTCTGGTTCCGATTGCGAATGGCATGGAGCTGATGGAGGCGGCGATCGCCGTCGATGTTCTGCGCCGAGCCGGAGCTGATGTCACTGTGGCTTCTGTGGAGAAGCAGCTGAGGGTTGAGGCTTGTCATGGGGTTGAGATCATCGCTGATGCTTTGGTTTCGCACTATGGCCAGAGCTTCTTCAAGCTCATTACTCTACCTGTGAGTACTCAGTCCCTCTATATAGGTGTCCTGAATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0006081 GO:0006082 GO:0006089 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009438 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019172 GO:0019249 GO:0019752 GO:0030054 GO:0031090 GO:0032787 GO:0042180 GO:0042182 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046185 GO:0046394 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051596 GO:0055044 GO:0061727 GO:0065007 GO:0071704 GO:0071944 GO:0072330 GO:0080134 GO:0080135 GO:0098588 GO:0098805 GO:1900407 GO:1900409 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902882 GO:1902884

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

119

Amino Acids

12.96

Weight (kDa)

4.43

Isoelectric Point (pI)

37.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DJ-1_PfpI	PF01965	39 - 106	2.5e-09	DJ-1/PfpI family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002158)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g10710
rosa_chinensis	RchiOBHm_Chr1g0352931 RchiOBHm_Chr1g0379931 RchiOBHm_Chr2g0127521 RchiOBHm_Chr5g0077921 RchiOBHm_Chr6g0254011 RchiOBHm_Chr7g0224991
rosa_laevigata	RLG00000010747 RLG00000036727
rosa_multiflora	Rmu_co8264081.1_g000001 Rmu_co8475729.1_g000001 Rmu_sc0000512.1_g000010 Rmu_sc0002563.1_g000056 Rmu_sc0003651.1_g000010 Rmu_sc0008382.1_g000016 Rmu_sc0011010.1_g000011 Rmu_sc0014844.1_g000012 Rmu_sc0017063.1_g000001 Rmu_sc0019512.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012710 Rroxscaffold_7G00161280
rosa_rugosa	Rorug01G0236000 Rorug02G0221700
rosa_samantha	Rh1BG320400 Rh1CG044300 Rh1CG334400 Rh1DG351000 Rh2AG096900 Rh2AG182700 Rh2BG335100 Rh2CG313300 Rh2CG351300 Rh2DG352700 Rh2DG390400 Rh3BG073400 Rh4CG209000 Rh5AG316800 Rh5AG511900 Rh6BG273400 Rh6BG434200 Rh6DG468100
rosa_wichuraiana	Rw2G026410 Rw4G021840 Rw6G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	31
AccBSI	CCGCTC	1 cut(s)	68
AciI	CCGC	2 cut(s)	68, 158
AclWI	GGATC	1 cut(s)	78
AcoI	YGGCCR	2 cut(s)	55, 286
AfaI	GTAC	1 cut(s)	325
AfiI	CCNNNNNNNGG	1 cut(s)	31
AgsI	TTSAA	1 cut(s)	301
AluBI	AGCT	5 cut(s)	148, 194, 226, 294, 304
AluI	AGCT	5 cut(s)	148, 194, 226, 294, 304
AlwI	GGATC	1 cut(s)	78
AoxI	GGCC	3 cut(s)	55, 96, 286
ApeKI	GCWGC	1 cut(s)	223
AsiSI	GCGATCGC	1 cut(s)	165
Asp700I	GAANNNNTTC	1 cut(s)	117
AspLEI	GCGC	1 cut(s)	183
BalI	TGGCCA	2 cut(s)	57, 288
BbvCI	CCTCAGC	1 cut(s)	227
BbvI	GCAGC	1 cut(s)	235
BccI	CCATC	2 cut(s)	47, 145
BceAI	ACGGC	1 cut(s)	152
BisI	GCNGC	2 cut(s)	159, 224
BlsI	GCNGC	2 cut(s)	160, 225
BmcAI	AGTACT	1 cut(s)	325
BmiI	GGNNCC	1 cut(s)	126
BmsI	GCATC	1 cut(s)	256
BpmI	CTGGAG	1 cut(s)	69
Bpu10I	CCTNAGC	1 cut(s)	227
Bsa29I	ATCGAT	1 cut(s)	355
BsaXI	ACNNNNNCTCC	2 cut(s)	183, 213
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	52
BseCI	ATCGAT	1 cut(s)	355
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMII	CTCAG	2 cut(s)	218, 341
BseNI	ACTGG	1 cut(s)	52
BseXI	GCAGC	1 cut(s)	235
Bsh1285I	CGRYCG	1 cut(s)	165
BshFI	GGCC	3 cut(s)	57, 98, 288
BshVI	ATCGAT	1 cut(s)	355
BsiEI	CGRYCG	1 cut(s)	165
BsiSI	CCGG	3 cut(s)	99, 110, 189
BslFI	GGGAC	1 cut(s)	316
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	316
BsnI	GGCC	3 cut(s)	57, 98, 288
Bsp143I	GATC	3 cut(s)	70, 162, 255
BspACI	CCGC	2 cut(s)	68, 158
BspANI	GGCC	3 cut(s)	57, 98, 288
BspCNI	CTCAG	2 cut(s)	219, 340
BspDI	ATCGAT	1 cut(s)	355
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	126
BspPI	GGATC	1 cut(s)	78
BsrBI	CCGCTC	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	52
BssMI	GATC	3 cut(s)	70, 162, 255
Bst4CI	ACNGT	2 cut(s)	13, 205
Bst6I	CTCTTC	1 cut(s)	30
BstDEI	CTNAG	2 cut(s)	227, 327
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	3 cut(s)	73, 165, 258
BstMBI	GATC	3 cut(s)	70, 162, 255
BstMCI	CGRYCG	1 cut(s)	165
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstV1I	GCAGC	1 cut(s)	235
Bsu15I	ATCGAT	1 cut(s)	355
BsuRI	GGCC	3 cut(s)	57, 98, 288
BsuTUI	ATCGAT	1 cut(s)	355
BtgZI	GCGATG	1 cut(s)	244
BtsIMutI	CAGTG	1 cut(s)	201
CciI	TCATGA	1 cut(s)	73
CfoI	GCGC	1 cut(s)	183
ClaI	ATCGAT	1 cut(s)	355
Csp6I	GTAC	1 cut(s)	324
CviAII	CATG	3 cut(s)	74, 142, 245
CviQI	GTAC	1 cut(s)	324
DdeI	CTNAG	2 cut(s)	227, 327
DpnI	GATC	3 cut(s)	72, 164, 257
DpnII	GATC	3 cut(s)	70, 162, 255
EaeI	YGGCCR	2 cut(s)	55, 286
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
FaeI	CATG	3 cut(s)	77, 145, 248
FaiI	YATR	6 cut(s)	75, 143, 246, 285, 339, 341
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	3 cut(s)	73, 141, 244
Fnu4HI	GCNGC	2 cut(s)	159, 224
Fsp4HI	GCNGC	2 cut(s)	159, 224
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	2 cut(s)	159, 224
GsuI	CTGGAG	1 cut(s)	69
HaeIII	GGCC	3 cut(s)	57, 98, 288
HapII	CCGG	3 cut(s)	99, 110, 189
HhaI	GCGC	1 cut(s)	183
Hin1II	CATG	3 cut(s)	77, 145, 248
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HinfI	GANTC	1 cut(s)	352
HpaII	CCGG	3 cut(s)	99, 110, 189
Hpy188I	TCNGA	1 cut(s)	129
Hpy188III	TCNNGA	2 cut(s)	74, 349
Hpy99I	CGWCG	1 cut(s)	173
HpyCH4III	ACNGT	2 cut(s)	13, 205
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	2 cut(s)	227, 327
Hsp92II	CATG	3 cut(s)	77, 145, 248
HspAI	GCGC	1 cut(s)	181
Kzo9I	GATC	3 cut(s)	70, 162, 255
LmnI	GCTCC	3 cut(s)	101, 145, 191
LpnPI	CCDG	8 cut(s)	33, 38, 107, 112, 123, 202, 302, 330
Lsp1109I	GCAGC	1 cut(s)	235
LweI	GCATC	1 cut(s)	256
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	3 cut(s)	72, 164, 257
MbiI	CCGCTC	1 cut(s)	68
MboI	GATC	3 cut(s)	70, 162, 255
MboII	GAAGA	2 cut(s)	47, 289
MlsI	TGGCCA	2 cut(s)	57, 288
MluCI	AATT	1 cut(s)	19
MluNI	TGGCCA	2 cut(s)	57, 288
MnlI	CCTC	5 cut(s)	88, 148, 222, 229, 344
Mox20I	TGGCCA	2 cut(s)	57, 288
MroXI	GAANNNNTTC	1 cut(s)	117
MscI	TGGCCA	2 cut(s)	57, 288
Msp20I	TGGCCA	2 cut(s)	57, 288
MspA1I	CMGCKG	1 cut(s)	226
MspI	CCGG	3 cut(s)	99, 110, 189
MwoI	GCNNNNNNNGC	1 cut(s)	164
NdeII	GATC	3 cut(s)	70, 162, 255
NlaIII	CATG	3 cut(s)	77, 145, 248
NlaIV	GGNNCC	1 cut(s)	126
NmeAIII	GCCGAG	1 cut(s)	209
NmuCI	GTSAC	1 cut(s)	199
PagI	TCATGA	1 cut(s)	73
PdmI	GAANNNNTTC	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	352
PflMI	CCANNNNNTGG	1 cut(s)	31
PkrI	GCNGC	2 cut(s)	160, 225
Ple19I	CGATCG	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	126
PvuI	CGATCG	1 cut(s)	165
PvuII	CAGCTG	1 cut(s)	226
RgaI	GCGATCGC	1 cut(s)	165
RsaI	GTAC	1 cut(s)	325
RsaNI	GTAC	1 cut(s)	324
SatI	GCNGC	2 cut(s)	159, 224
Sau3AI	GATC	3 cut(s)	70, 162, 255
ScaI	AGTACT	1 cut(s)	325
SetI	ASST	8 cut(s)	120, 150, 196, 228, 296, 306, 319, 346
SfaAI	GCGATCGC	1 cut(s)	165
SfaNI	GCATC	1 cut(s)	256
SgfI	GCGATCGC	1 cut(s)	165
Sse9I	AATT	1 cut(s)	19
SsiI	CCGC	2 cut(s)	68, 158
TaaI	ACNGT	2 cut(s)	13, 205
TaqI	TCGA	2 cut(s)	171, 355
TasI	AATT	1 cut(s)	19
TatI	WGTACW	1 cut(s)	323
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	1 cut(s)	352
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	223
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	1 cut(s)	90
TspRI	CASTG	1 cut(s)	208
Van91I	CCANNNNNTGG	1 cut(s)	31
XmnI	GAANNNNTTC	1 cut(s)	117
ZrmI	AGTACT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.