Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002158

Physical Location & Seq

Genomic Coordinates Forward (+)

65416045 .. 65425428

Gene Structure 9384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG434200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGCTTCTGCTTCTCCCGCCAAGAAGGGAGGGATGTCTGGTGCTACCAATCTTAAGAATATTGAAAGCTATGAACATATACTCGAGACTCTTTTTCATCTGTGCCATGGTTGTGTGTATATGGTACATTGCTGTGATGCTTTACCTATGCCCGAAATCTCGATCATACAGGTTCTGCGAAGGCCAGTGATTTCTCTGCTTATGGACAAGGATAGTGGGCAATATAAGGGTGTTAGATTGGTTTCAGGTCAGGATTTGTTCAGTCATCCCTTCACGGTGCCACTGCCATCAGCTTCATCTCCACCAGTCCTTCCAAAAGAAAGTCTGAAAGGTGATAAAAGAAAAGTGGCCAGGGGAATATGTATTACAACAAGATCCTTGAAGCCAGATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005968 GO:0008150 GO:0009889 GO:0009893 GO:0010556 GO:0010604 GO:0017016 GO:0017137 GO:0019222 GO:0019899 GO:0031267 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051020 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0080090 GO:1902494 GO:1990234 GO:2000112 GO:2000539 GO:2000541

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDI

Protein Analysis

131

Amino Acids

14.27

Weight (kDa)

9.06

Isoelectric Point (pI)

66.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0002158)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g10710
rosa_chinensis	RchiOBHm_Chr1g0352931 RchiOBHm_Chr1g0379931 RchiOBHm_Chr2g0127521 RchiOBHm_Chr5g0077921 RchiOBHm_Chr6g0254011 RchiOBHm_Chr7g0224991
rosa_laevigata	RLG00000010747 RLG00000036727
rosa_multiflora	Rmu_co8264081.1_g000001 Rmu_co8475729.1_g000001 Rmu_sc0000512.1_g000010 Rmu_sc0002563.1_g000056 Rmu_sc0003651.1_g000010 Rmu_sc0008382.1_g000016 Rmu_sc0011010.1_g000011 Rmu_sc0014844.1_g000012 Rmu_sc0017063.1_g000001 Rmu_sc0019512.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012710 Rroxscaffold_7G00161280
rosa_rugosa	Rorug01G0236000 Rorug02G0221700
rosa_samantha	Rh1BG320400 Rh1CG044300 Rh1CG334400 Rh1DG351000 Rh2AG096900 Rh2AG182700 Rh2BG335100 Rh2CG313300 Rh2CG351300 Rh2DG352700 Rh2DG390400 Rh3BG073400 Rh4CG209000 Rh5AG316800 Rh5AG511900 Rh6BG273400 Rh6BG434200 Rh6DG468100
rosa_wichuraiana	Rw2G026410 Rw4G021840 Rw6G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	277
AciI	CCGC	1 cut(s)	18
AclWI	GGATC	1 cut(s)	369
AcoI	YGGCCR	1 cut(s)	348
AfaI	GTAC	1 cut(s)	126
AflII	CTTAAG	1 cut(s)	53
AgsI	TTSAA	2 cut(s)	65, 382
AjnI	CCWGG	1 cut(s)	350
AluBI	AGCT	2 cut(s)	69, 293
AluI	AGCT	2 cut(s)	69, 293
Alw26I	GTCTC	1 cut(s)	80
AlwI	GGATC	1 cut(s)	369
AlwNI	CAGNNNCTG	1 cut(s)	175
Ama87I	CYCGRG	1 cut(s)	83
AoxI	GGCC	2 cut(s)	182, 348
AsuHPI	GGTGA	1 cut(s)	344
AvaI	CYCGRG	1 cut(s)	83
BalI	TGGCCA	1 cut(s)	350
BanI	GGYRCC	1 cut(s)	277
BccI	CCATC	1 cut(s)	295
BciT130I	CCWGG	1 cut(s)	352
BcoDI	GTCTC	1 cut(s)	80
BfrI	CTTAAG	1 cut(s)	53
Bme1390I	CCNGG	1 cut(s)	352
BmeT110I	CYCGRG	1 cut(s)	83
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	1 cut(s)	352
BmsI	GCATC	1 cut(s)	127
BsaJI	CCNNGG	2 cut(s)	106, 351
Bse1I	ACTGG	2 cut(s)	185, 305
Bse3DI	GCAATG	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	352
BseDI	CCNNGG	2 cut(s)	106, 351
BseGI	GGATG	2 cut(s)	39, 265
BseMI	GCAATG	1 cut(s)	127
BseNI	ACTGG	2 cut(s)	185, 305
BshFI	GGCC	2 cut(s)	184, 350
BshNI	GGYRCC	1 cut(s)	277
BsiHKCI	CYCGRG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	80
BsnI	GGCC	2 cut(s)	184, 350
BsoBI	CYCGRG	1 cut(s)	83
Bsp143I	GATC	2 cut(s)	162, 374
Bsp19I	CCATGG	1 cut(s)	106
BspACI	CCGC	1 cut(s)	18
BspANI	GGCC	2 cut(s)	184, 350
BspLI	GGNNCC	1 cut(s)	279
BspPI	GGATC	1 cut(s)	369
BspT107I	GGYRCC	1 cut(s)	277
BspTI	CTTAAG	1 cut(s)	53
BsrDI	GCAATG	1 cut(s)	127
BsrI	ACTGG	2 cut(s)	185, 305
BssECI	CCNNGG	2 cut(s)	106, 351
BssMI	GATC	2 cut(s)	162, 374
BssT1I	CCWWGG	1 cut(s)	106
Bst2UI	CCWGG	1 cut(s)	352
Bst4CI	ACNGT	1 cut(s)	277
BstAFI	CTTAAG	1 cut(s)	53
BstDSI	CCRYGG	1 cut(s)	106
BstF5I	GGATG	2 cut(s)	39, 265
BstKTI	GATC	2 cut(s)	165, 377
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	2 cut(s)	162, 374
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstNI	CCWGG	1 cut(s)	352
BstSCI	CCNGG	1 cut(s)	350
BstX2I	RGATCY	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	374
BsuRI	GGCC	2 cut(s)	184, 350
BtgI	CCRYGG	1 cut(s)	106
BtsCI	GGATG	2 cut(s)	39, 265
BtsI	GCAGTG	1 cut(s)	281
BtsIMutI	CAGTG	2 cut(s)	192, 281
CaiI	CAGNNNCTG	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	125
CspCI	CAANNNNNGTGG	2 cut(s)	196, 231
CviAII	CATG	1 cut(s)	107
CviJI	RGCY	6 cut(s)	5, 69, 184, 293, 350, 385
CviKI_1	RGCY	6 cut(s)	5, 69, 184, 293, 350, 385
CviQI	GTAC	1 cut(s)	125
DpnI	GATC	2 cut(s)	164, 376
DpnII	GATC	2 cut(s)	162, 374
EaeI	YGGCCR	1 cut(s)	348
Eco130I	CCWWGG	1 cut(s)	106
Eco88I	CYCGRG	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	350
EcoT14I	CCWWGG	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	106
FaeI	CATG	1 cut(s)	110
FatI	CATG	1 cut(s)	106
FauI	CCCGC	1 cut(s)	25
FokI	GGATG	2 cut(s)	46, 252
HaeIII	GGCC	2 cut(s)	184, 350
Hin1II	CATG	1 cut(s)	110
HinfI	GANTC	1 cut(s)	88
HphI	GGTGA	1 cut(s)	344
Hpy188I	TCNGA	1 cut(s)	327
Hpy188III	TCNNGA	3 cut(s)	85, 160, 251
HpyAV	CCTTC	4 cut(s)	19, 174, 280, 320
HpyCH4III	ACNGT	1 cut(s)	277
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
Hsp92II	CATG	1 cut(s)	110
Kzo9I	GATC	2 cut(s)	162, 374
LpnPI	CCDG	8 cut(s)	24, 155, 198, 231, 236, 318, 337, 364
LweI	GCATC	1 cut(s)	127
MalI	GATC	2 cut(s)	164, 376
MboI	GATC	2 cut(s)	162, 374
MflI	RGATCY	1 cut(s)	374
MlsI	TGGCCA	1 cut(s)	350
MluNI	TGGCCA	1 cut(s)	350
MlyI	GAGTC	1 cut(s)	82
MnlI	CCTC	1 cut(s)	23
Mox20I	TGGCCA	1 cut(s)	350
MscI	TGGCCA	1 cut(s)	350
MseI	TTAA	1 cut(s)	54
MslI	CAYNNNNRTG	2 cut(s)	111, 132
Msp20I	TGGCCA	1 cut(s)	350
MspCI	CTTAAG	1 cut(s)	53
MspR9I	CCNGG	1 cut(s)	352
MvaI	CCWGG	1 cut(s)	352
MwoI	GCNNNNNNNGC	1 cut(s)	17
NcoI	CCATGG	1 cut(s)	106
NdeII	GATC	2 cut(s)	162, 374
NlaIII	CATG	1 cut(s)	110
NlaIV	GGNNCC	1 cut(s)	279
PaeR7I	CTCGAG	1 cut(s)	83
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
Psp6I	CCWGG	1 cut(s)	350
PspGI	CCWGG	1 cut(s)	350
PspN4I	GGNNCC	1 cut(s)	279
PstNI	CAGNNNCTG	1 cut(s)	175
PsuI	RGATCY	1 cut(s)	374
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
RseI	CAYNNNNRTG	2 cut(s)	111, 132
SaqAI	TTAA	1 cut(s)	54
Sau3AI	GATC	2 cut(s)	162, 374
SchI	GAGTC	1 cut(s)	82
ScrFI	CCNGG	1 cut(s)	352
SetI	ASST	6 cut(s)	71, 148, 174, 250, 295, 334
SfaNI	GCATC	1 cut(s)	127
Sfr274I	CTCGAG	1 cut(s)	83
SlaI	CTCGAG	1 cut(s)	83
SmiMI	CAYNNNNRTG	2 cut(s)	111, 132
SmlI	CTYRAG	2 cut(s)	53, 83
SmoI	CTYRAG	2 cut(s)	53, 83
SsiI	CCGC	1 cut(s)	18
SspI	AATATT	1 cut(s)	61
StyD4I	CCNGG	1 cut(s)	350
StyI	CCWWGG	1 cut(s)	106
TaaI	ACNGT	1 cut(s)	277
TaqI	TCGA	2 cut(s)	84, 161
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	2 cut(s)	192, 288
TspDTI	ATGAA	3 cut(s)	86, 87, 285
TspRI	CASTG	2 cut(s)	192, 288
Vha464I	CTTAAG	1 cut(s)	53
XhoI	CTCGAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.