Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002158

Physical Location & Seq

Genomic Coordinates Forward (+)

7376638 .. 7378645

Gene Structure 2008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGAAGCAATTGAAAGGAAGTTTTGACTGCTGCTGCGCTCCCTCAACGCTCATTTTTTACACATCGCAACTTCGATCCGATCCCCGCTCCAATCCGCCAAACAGGCGTTCAGTGTACTTTTGTGTGAAAGAATCAAAGATGTTGGGAATTTTAAGGCAAAAAGTGGGAGCTGGAAGCCCGTCAGCTATGATTTTGGGGCAGAGGATCTGCCCTGCCACGTCGGCAATGAGGGGTTTCGCATCTTCGGCGAAAGAGATGACAGTGAGGGATGCTCTAAACTCTGCGCTCGATGAGGAAATGTCCGCGGACCCAAAAGTGTTTTTGATGGGTGAAGAGGTTGGGGAATATCAAGGTGCTTACAAGATAACCAAAGGACTTCTGGACAAGTATGGCCCTGACAGGGTTCGTGATACCCCAATCACCGAGGCTGGGTTTACAGGGATTGGAGTTGGTGCTGCTTACTATGGTTTGAGACCTGTTATAGAGTTTATGACCTTTAACTTCTCAATGCAGGCAATTGACCACATCATCAATTCTGCTGCAAAATCAAATTATATGTCTGCTGGCCAAATAAATGTGCCCATTGTTTTCAGAGGACCAAACGGTGCTGCTGCTGGTGTTGGTGCCCAGCATTCTCAAGTATTTGTTATGCAGCATGGTATGCAACCTGCCCTGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko04066 ko04922 ko05230 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200 map04066 map04922 map05230

Pfam Domains

Protein Families

Transket_pyr Transketolase_C

Protein Analysis

227

Amino Acids

24.35

Weight (kDa)

8.96

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transket_pyr	PF02779	85 - 214	1.9e-28	Transketolase, pyrimidine binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002158)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g10710
rosa_chinensis	RchiOBHm_Chr1g0352931 RchiOBHm_Chr1g0379931 RchiOBHm_Chr2g0127521 RchiOBHm_Chr5g0077921 RchiOBHm_Chr6g0254011 RchiOBHm_Chr7g0224991
rosa_laevigata	RLG00000010747 RLG00000036727
rosa_multiflora	Rmu_co8264081.1_g000001 Rmu_co8475729.1_g000001 Rmu_sc0000512.1_g000010 Rmu_sc0002563.1_g000056 Rmu_sc0003651.1_g000010 Rmu_sc0008382.1_g000016 Rmu_sc0011010.1_g000011 Rmu_sc0014844.1_g000012 Rmu_sc0017063.1_g000001 Rmu_sc0019512.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012710 Rroxscaffold_7G00161280
rosa_rugosa	Rorug01G0236000 Rorug02G0221700
rosa_samantha	Rh1BG320400 Rh1CG044300 Rh1CG334400 Rh1DG351000 Rh2AG096900 Rh2AG182700 Rh2BG335100 Rh2CG313300 Rh2CG351300 Rh2DG352700 Rh2DG390400 Rh3BG073400 Rh4CG209000 Rh5AG316800 Rh5AG511900 Rh6BG273400 Rh6BG434200 Rh6DG468100
rosa_wichuraiana	Rw2G026410 Rw4G021840 Rw6G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	676
AccB1I	GGYRCC	1 cut(s)	623
AccBSI	CCGCTC	1 cut(s)	87
AccII	CGCG	1 cut(s)	305
AciI	CCGC	4 cut(s)	85, 95, 303, 305
AclWI	GGATC	3 cut(s)	69, 74, 212
AcoI	YGGCCR	1 cut(s)	565
AcsI	RAATTY	1 cut(s)	147
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	3 cut(s)	400, 429, 674
AgsI	TTSAA	1 cut(s)	13
AjiI	CACGTC	1 cut(s)	219
AjnI	CCWGG	1 cut(s)	672
AjuI	GAANNNNNNNTTGG	2 cut(s)	91, 123
AluBI	AGCT	2 cut(s)	170, 185
AluI	AGCT	2 cut(s)	170, 185
Alw26I	GTCTC	1 cut(s)	466
AlwI	GGATC	3 cut(s)	69, 74, 212
AoxI	GGCC	2 cut(s)	391, 565
ApeKI	GCWGC	7 cut(s)	30, 33, 455, 539, 608, 611, 652
ApoI	RAATTY	1 cut(s)	147
ArsI	GACNNNNNNTTYG	2 cut(s)	542, 574
AspLEI	GCGC	2 cut(s)	38, 286
AspS9I	GGNCC	3 cut(s)	307, 392, 596
AsuHPI	GGTGA	2 cut(s)	341, 412
AvaII	GGWCC	2 cut(s)	307, 596
BaeGI	GKGCMC	2 cut(s)	582, 628
BalI	TGGCCA	1 cut(s)	567
BanI	GGYRCC	1 cut(s)	623
BbvI	GCAGC	7 cut(s)	17, 20, 442, 526, 595, 598, 664
BccI	CCATC	1 cut(s)	319
BciT130I	CCWGG	1 cut(s)	674
BcoDI	GTCTC	1 cut(s)	466
BfuAI	ACCTGC	1 cut(s)	676
BglI	GCCNNNNNGGC	2 cut(s)	103, 221
BisI	GCNGC	7 cut(s)	31, 34, 456, 540, 609, 612, 653
BlsI	GCNGC	7 cut(s)	32, 35, 457, 541, 610, 613, 654
Bme1390I	CCNGG	1 cut(s)	674
Bme18I	GGWCC	2 cut(s)	307, 596
BmgBI	CACGTC	1 cut(s)	219
BmgT120I	GGNCC	3 cut(s)	307, 392, 596
BmiI	GGNNCC	2 cut(s)	309, 625
BmrFI	CCNGG	1 cut(s)	674
BmsI	GCATC	2 cut(s)	248, 259
BplI	GAGNNNNNCTC	2 cut(s)	256, 288
BpuEI	CTTGAG	1 cut(s)	621
BsaI	GGTCTC	1 cut(s)	466
BsaJI	CCNNGG	4 cut(s)	303, 423, 672, 673
Bsc4I	CCNNNNNNNGG	3 cut(s)	400, 429, 674
Bse3DI	GCAATG	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	674
BseDI	CCNNGG	4 cut(s)	303, 423, 672, 673
BseGI	GGATG	1 cut(s)	274
BseLI	CCNNNNNNNGG	3 cut(s)	400, 429, 674
BseMI	GCAATG	1 cut(s)	231
BseSI	GKGCMC	2 cut(s)	582, 628
BseXI	GCAGC	7 cut(s)	17, 20, 442, 526, 595, 598, 664
BseYI	CCCAGC	2 cut(s)	428, 627
Bsh1236I	CGCG	1 cut(s)	305
BshFI	GGCC	2 cut(s)	393, 567
BshNI	GGYRCC	1 cut(s)	623
BslI	CCNNNNNNNGG	3 cut(s)	400, 429, 674
BsmAI	GTCTC	1 cut(s)	466
BsmI	GAATGC	1 cut(s)	631
BsnI	GGCC	2 cut(s)	393, 567
Bso31I	GGTCTC	1 cut(s)	466
Bsp1286I	GDGCHC	2 cut(s)	582, 628
Bsp143I	GATC	3 cut(s)	74, 79, 204
BspACI	CCGC	4 cut(s)	85, 95, 303, 305
BspANI	GGCC	2 cut(s)	393, 567
BspFNI	CGCG	1 cut(s)	305
BspLI	GGNNCC	2 cut(s)	309, 625
BspMI	ACCTGC	1 cut(s)	676
BspPI	GGATC	3 cut(s)	69, 74, 212
BspT107I	GGYRCC	1 cut(s)	623
BspTNI	GGTCTC	1 cut(s)	466
BsrBI	CCGCTC	1 cut(s)	87
BsrDI	GCAATG	1 cut(s)	231
BssECI	CCNNGG	4 cut(s)	303, 423, 672, 673
BssMI	GATC	3 cut(s)	74, 79, 204
Bst2UI	CCWGG	1 cut(s)	674
Bst4CI	ACNGT	2 cut(s)	262, 605
Bst6I	CTCTTC	1 cut(s)	327
BstAPI	GCANNNNNTGC	1 cut(s)	661
BstC8I	GCNNGC	2 cut(s)	513, 565
BstDSI	CCRYGG	1 cut(s)	303
BstF5I	GGATG	1 cut(s)	274
BstFNI	CGCG	1 cut(s)	305
BstHHI	GCGC	2 cut(s)	38, 286
BstKTI	GATC	3 cut(s)	77, 82, 207
BstMAI	GTCTC	1 cut(s)	466
BstMBI	GATC	3 cut(s)	74, 79, 204
BstMWI	GCNNNNNNNGC	4 cut(s)	103, 221, 245, 661
BstNI	CCWGG	1 cut(s)	674
BstSCI	CCNGG	1 cut(s)	672
BstSLI	GKGCMC	2 cut(s)	582, 628
BstUI	CGCG	1 cut(s)	305
BstV1I	GCAGC	7 cut(s)	17, 20, 442, 526, 595, 598, 664
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
BsuRI	GGCC	2 cut(s)	393, 567
BtgI	CCRYGG	1 cut(s)	303
BtgZI	GCGATG	1 cut(s)	48
BtrI	CACGTC	1 cut(s)	219
BtsCI	GGATG	1 cut(s)	274
BtsIMutI	CAGTG	2 cut(s)	117, 267
BveI	ACCTGC	1 cut(s)	676
Cac8I	GCNNGC	2 cut(s)	513, 565
CfoI	GCGC	2 cut(s)	38, 286
Cfr13I	GGNCC	3 cut(s)	307, 392, 596
Cfr42I	CCGCGG	1 cut(s)	306
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	1 cut(s)	656
CviJI	RGCY	6 cut(s)	170, 177, 185, 393, 428, 567
CviKI_1	RGCY	6 cut(s)	170, 177, 185, 393, 428, 567
CviQI	GTAC	1 cut(s)	115
DpnI	GATC	3 cut(s)	76, 81, 206
DpnII	GATC	3 cut(s)	74, 79, 204
EaeI	YGGCCR	1 cut(s)	565
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
EciI	GGCGGA	1 cut(s)	84
Eco31I	GGTCTC	1 cut(s)	466
Eco47I	GGWCC	2 cut(s)	307, 596
EcoRII	CCWGG	1 cut(s)	672
FaeI	CATG	1 cut(s)	659
FatI	CATG	1 cut(s)	655
FauI	CCCGC	1 cut(s)	92
Fnu4HI	GCNGC	7 cut(s)	31, 34, 456, 540, 609, 612, 653
FokI	GGATG	1 cut(s)	281
Fsp4HI	GCNGC	7 cut(s)	31, 34, 456, 540, 609, 612, 653
GlaI	GCGC	2 cut(s)	37, 285
GluI	GCNGC	7 cut(s)	31, 34, 456, 540, 609, 612, 653
GsaI	CCCAGC	2 cut(s)	432, 631
HaeIII	GGCC	2 cut(s)	393, 567
HhaI	GCGC	2 cut(s)	38, 286
Hin1II	CATG	1 cut(s)	659
Hin6I	GCGC	2 cut(s)	36, 284
HinP1I	GCGC	2 cut(s)	36, 284
HinfI	GANTC	1 cut(s)	131
HphI	GGTGA	2 cut(s)	341, 412
Hpy166II	GTNNAC	2 cut(s)	115, 435
Hpy188I	TCNGA	2 cut(s)	79, 593
Hpy188III	TCNNGA	2 cut(s)	380, 407
Hpy8I	GTNNAC	2 cut(s)	115, 435
Hpy99I	CGWCG	1 cut(s)	223
HpyCH4III	ACNGT	2 cut(s)	262, 605
HpyCH4IV	ACGT	1 cut(s)	218
HpyCH4V	TGCA	4 cut(s)	511, 542, 652, 664
HpyF10VI	GCNNNNNNNGC	4 cut(s)	103, 221, 245, 661
HpySE526I	ACGT	1 cut(s)	218
Hsp92II	CATG	1 cut(s)	659
HspAI	GCGC	2 cut(s)	36, 284
KspI	CCGCGG	1 cut(s)	306
Kzo9I	GATC	3 cut(s)	74, 79, 204
LmnI	GCTCC	3 cut(s)	43, 92, 167
Lsp1109I	GCAGC	7 cut(s)	17, 20, 442, 526, 595, 598, 664
LweI	GCATC	2 cut(s)	248, 259
MaeII	ACGT	1 cut(s)	218
MalI	GATC	3 cut(s)	76, 81, 206
MbiI	CCGCTC	1 cut(s)	87
MboI	GATC	3 cut(s)	74, 79, 204
MboII	GAAGA	2 cut(s)	234, 344
MfeI	CAATTG	2 cut(s)	8, 516
MflI	RGATCY	1 cut(s)	204
MhlI	GDGCHC	2 cut(s)	582, 628
MlsI	TGGCCA	1 cut(s)	567
MluCI	AATT	5 cut(s)	8, 147, 516, 532, 550
MluNI	TGGCCA	1 cut(s)	567
MnlI	CCTC	8 cut(s)	52, 195, 222, 258, 286, 328, 418, 587
Mox20I	TGGCCA	1 cut(s)	567
MscI	TGGCCA	1 cut(s)	567
MseI	TTAA	2 cut(s)	152, 498
Msp20I	TGGCCA	1 cut(s)	567
MspA1I	CMGCKG	1 cut(s)	305
MspR9I	CCNGG	1 cut(s)	674
MunI	CAATTG	2 cut(s)	8, 516
Mva1269I	GAATGC	1 cut(s)	631
MvaI	CCWGG	1 cut(s)	674
MvnI	CGCG	1 cut(s)	305
MwoI	GCNNNNNNNGC	4 cut(s)	103, 221, 245, 661
NdeII	GATC	3 cut(s)	74, 79, 204
NlaIII	CATG	1 cut(s)	659
NlaIV	GGNNCC	2 cut(s)	309, 625
PasI	CCCWGGG	1 cut(s)	673
PctI	GAATGC	1 cut(s)	631
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	7 cut(s)	32, 35, 457, 541, 610, 613, 654
Psp6I	CCWGG	1 cut(s)	672
PspFI	CCCAGC	2 cut(s)	428, 627
PspGI	CCWGG	1 cut(s)	672
PspN4I	GGNNCC	2 cut(s)	309, 625
PspPI	GGNCC	3 cut(s)	307, 392, 596
PsuI	RGATCY	1 cut(s)	204
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SacII	CCGCGG	1 cut(s)	306
SaqAI	TTAA	2 cut(s)	152, 498
SatI	GCNGC	7 cut(s)	31, 34, 456, 540, 609, 612, 653
Sau3AI	GATC	3 cut(s)	74, 79, 204
Sau96I	GGNCC	3 cut(s)	307, 392, 596
ScrFI	CCNGG	1 cut(s)	674
SduI	GDGCHC	2 cut(s)	582, 628
SetI	ASST	8 cut(s)	172, 187, 221, 339, 355, 478, 497, 670
SfaNI	GCATC	2 cut(s)	248, 259
Sfr303I	CCGCGG	1 cut(s)	306
SgrBI	CCGCGG	1 cut(s)	306
SinI	GGWCC	2 cut(s)	307, 596
SmlI	CTYRAG	1 cut(s)	636
SmoI	CTYRAG	1 cut(s)	636
Sse9I	AATT	5 cut(s)	8, 147, 516, 532, 550
SsiI	CCGC	4 cut(s)	85, 95, 303, 305
StyD4I	CCNGG	1 cut(s)	672
TaaI	ACNGT	2 cut(s)	262, 605
TaiI	ACGT	1 cut(s)	221
TaqI	TCGA	2 cut(s)	73, 288
TasI	AATT	5 cut(s)	8, 147, 516, 532, 550
TatI	WGTACW	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	2 cut(s)	152, 498
Tru9I	TTAA	2 cut(s)	152, 498
TscAI	CASTG	2 cut(s)	117, 267
TseI	GCWGC	7 cut(s)	30, 33, 455, 539, 608, 611, 652
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	117, 267
VpaK11BI	GGWCC	2 cut(s)	307, 596
XapI	RAATTY	1 cut(s)	147
XcmI	CCANNNNNNNNNTGG	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.