Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001714

Physical Location & Seq

Genomic Coordinates Reverse (-)

8142306 .. 8143814

Gene Structure 1509 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGGTGGAACACGCTGTTCCACGGAACAAGTTTTGGGTGATTTTTCATTCCGTCTCCCTCCCTGGAACGACTTGTTCCACATCTGTGGGACACAAATTTATAACATTTTAAGACAAAAATACCCCTTCTGCTGCTCTCTTCCCGTAGACTTCCTCCTCATCTTTCCTCCTCATCCTTCTTCTTCATCCTCTCCCGTAGCCGTCGACTGCACCCAGCCAGCACGCAGCGGCACGGAGCCACTACCATCGCACTGCAGATTGACCCAGGTGGAGGTTCAAGTGAGGAAGTTGTATTGTGTGAGTAAGGTTGTTGTTTTACCTATTAACATTGAGGATGTTGCTCTGAGTGATGTCGAAATCGAAAAGGCTTTGCAGGCCGGAGAGACACTTGTTCGAGTTAATCAGGATACCCGCTTGAATAACCGAGTTCTTGATTTGCGAACACCTGCGAATAAGGGGATATTCCGCATTCAGAGTCAAGTTGGCAATATCTTTAGGCAGTTCTTGATATCCGAAGGCTTTTTTGAAATCCACTCGCCAAAGCTGATTGCTGGTTCAAGTGAAGGTGGAGTTGCTGTTTTTAGACTCAACTACAAGGGTCAAGATGCCTGCCTTGCCCAGTCACCTCAGCTTCACAAGCAGATGGCTATATGTGGTGACTTCGGCCATATTTTTGAGATTGGTCCTGTTTTTAGAGCTGAGGACTCCTTCACCCATAGGCATTTGTGTGAGTTCACTTGCCTTGATGTTAAGATGGAGATCAAGAGGCACTACTTTGAGGTAGAATTAGTAATTTTTTGGGCATTTGTTTACCTTTATCGCCCTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006422 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045202 GO:0046483 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0098542 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2 tRNA_anti-codon

Protein Analysis

277

Amino Acids

31.3

Weight (kDa)

6.74

Isoelectric Point (pI)

66.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2	PF00152	134 - 255	1e-31	tRNA synthetases class II (D, K and N)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26870 AT4G31180 AT4G31180
fragaria_vesca	FvH4_2g15870 FvH4_2g15910 FvH4_2g30550
malus_domestica	MD08G1134400.v1.1 MD12G1153800.v1.1 MD14G1143300.v1.1 MD15G1113400.v1.1
prunus_persica	Prupe.1G463800_v2.0.a1 Prupe.4G141600_v2.0.a1 Prupe.8G055000_v2.0.a1
pyrus_communis	pycom08g11340 pycom15g10170 pycom16g11710
rosa_chinensis	RchiOBHm_Chr5g0032141 RchiOBHm_Chr5g0032161 RchiOBHm_Chr6g0278871 RchiOBHm_Chr6g0312531
rosa_laevigata	RLG00000010321 RLG00000033368
rosa_multiflora	Rmu_co8427103.1_g000001 Rmu_sc0003031.1_g000023 Rmu_sc0005375.1_g000002 Rmu_sc0005375.1_g000011 Rmu_sc0008363.1_g000011 Rmu_sc0043080.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048240 Rroxscaffold_1G00048270 Rroxscaffold_7G00156770
rosa_rugosa	Rorug06G0119800 Rorug06G0120000 Rorug06G0123400 Rorug06G0396100 Rorug06G0396200
rosa_samantha	Rh5DG228900 Rh6AG228300 Rh6AG513500 Rh6BG233900 Rh6BG234000 Rh6BG524200 Rh6BG526500 Rh6CG236300 Rh6CG531400 Rh6DG515600
rosa_wichuraiana	Rw6G020030 Rw6G044650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	102
AarI	CACCTGC	1 cut(s)	454
Acc36I	ACCTGC	1 cut(s)	454
AccI	GTMKAC	2 cut(s)	147, 204
AciI	CCGC	3 cut(s)	228, 412, 466
AcoI	YGGCCR	1 cut(s)	664
AcsI	RAATTY	1 cut(s)	96
AfiI	CCNNNNNNNGG	1 cut(s)	271
AgsI	TTSAA	4 cut(s)	278, 418, 527, 558
AjnI	CCWGG	2 cut(s)	62, 264
AleI	CACNNNNGTG	1 cut(s)	84
AluBI	AGCT	3 cut(s)	544, 631, 698
AluI	AGCT	3 cut(s)	544, 631, 698
Alw26I	GTCTC	2 cut(s)	59, 377
AoxI	GGCC	2 cut(s)	375, 664
ApeKI	GCWGC	2 cut(s)	132, 225
ApoI	RAATTY	1 cut(s)	96
AspS9I	GGNCC	1 cut(s)	683
AsuHPI	GGTGA	4 cut(s)	50, 615, 668, 703
AvaII	GGWCC	1 cut(s)	683
BbvCI	CCTCAGC	2 cut(s)	627, 699
BbvI	GCAGC	2 cut(s)	119, 237
BccI	CCATC	3 cut(s)	253, 637, 748
BceAI	ACGGC	1 cut(s)	185
BciT130I	CCWGG	2 cut(s)	64, 266
BciVI	GTATCC	1 cut(s)	400
BcoDI	GTCTC	2 cut(s)	59, 377
BfmI	CTRYAG	1 cut(s)	253
BfuAI	ACCTGC	1 cut(s)	454
BfuI	GTATCC	1 cut(s)	400
BisI	GCNGC	3 cut(s)	133, 226, 229
BlsI	GCNGC	3 cut(s)	134, 227, 230
Bme1390I	CCNGG	2 cut(s)	64, 266
Bme18I	GGWCC	1 cut(s)	683
BmgT120I	GGNCC	1 cut(s)	683
BmiI	GGNNCC	1 cut(s)	237
BmrFI	CCNGG	2 cut(s)	64, 266
BmrI	ACTGGG	1 cut(s)	613
BmsI	GCATC	1 cut(s)	595
BmuI	ACTGGG	1 cut(s)	613
Bpu10I	CCTNAGC	2 cut(s)	627, 699
BsaBI	GATNNNNATC	1 cut(s)	758
BsaJI	CCNNGG	3 cut(s)	21, 62, 264
BsaXI	ACNNNNNCTCC	2 cut(s)	561, 591
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse1I	ACTGG	1 cut(s)	619
Bse8I	GATNNNNATC	1 cut(s)	758
BseBI	CCWGG	2 cut(s)	64, 266
BseDI	CCNNGG	3 cut(s)	21, 62, 264
BseGI	GGATG	3 cut(s)	172, 185, 340
BseJI	GATNNNNATC	1 cut(s)	758
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMII	CTCAG	3 cut(s)	335, 641, 690
BseNI	ACTGG	1 cut(s)	619
BseRI	GAGGAG	2 cut(s)	146, 159
BseXI	GCAGC	2 cut(s)	119, 237
BseYI	CCCAGC	1 cut(s)	213
BsgI	GTGCAG	1 cut(s)	193
BshFI	GGCC	2 cut(s)	377, 666
BsiSI	CCGG	1 cut(s)	378
BslFI	GGGAC	1 cut(s)	103
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmAI	GTCTC	2 cut(s)	59, 377
BsmBI	CGTCTC	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	103
BsmI	GAATGC	1 cut(s)	468
BsnI	GGCC	2 cut(s)	377, 666
Bsp143I	GATC	1 cut(s)	759
BspACI	CCGC	3 cut(s)	228, 412, 466
BspANI	GGCC	2 cut(s)	377, 666
BspCNI	CTCAG	3 cut(s)	336, 640, 691
BspLI	GGNNCC	1 cut(s)	237
BspMAI	CTGCAG	1 cut(s)	257
BspMI	ACCTGC	1 cut(s)	454
BsrI	ACTGG	1 cut(s)	619
BssECI	CCNNGG	3 cut(s)	21, 62, 264
BssMI	GATC	1 cut(s)	759
Bst2UI	CCWGG	2 cut(s)	64, 266
Bst6I	CTCTTC	1 cut(s)	144
BstC8I	GCNNGC	4 cut(s)	219, 223, 375, 610
BstDEI	CTNAG	3 cut(s)	344, 627, 699
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	3 cut(s)	172, 185, 340
BstKTI	GATC	1 cut(s)	762
BstMAI	GTCTC	2 cut(s)	59, 377
BstMBI	GATC	1 cut(s)	759
BstMWI	GCNNNNNNNGC	3 cut(s)	374, 614, 637
BstNI	CCWGG	2 cut(s)	64, 266
BstSCI	CCNGG	2 cut(s)	62, 264
BstSFI	CTRYAG	1 cut(s)	253
BstV1I	GCAGC	2 cut(s)	119, 237
BstXI	CCANNNNNNTGG	1 cut(s)	86
BsuI	GTATCC	1 cut(s)	400
BsuRI	GGCC	2 cut(s)	377, 666
BtgI	CCRYGG	1 cut(s)	21
BtgZI	GCGATG	1 cut(s)	231
BtsCI	GGATG	3 cut(s)	172, 185, 340
BtsI	GCAGTG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	250
BveI	ACCTGC	1 cut(s)	454
Cac8I	GCNNGC	4 cut(s)	219, 223, 375, 610
Cfr13I	GGNCC	1 cut(s)	683
DdeI	CTNAG	3 cut(s)	344, 627, 699
DpnI	GATC	1 cut(s)	761
DpnII	GATC	1 cut(s)	759
EaeI	YGGCCR	1 cut(s)	664
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco32I	GATATC	1 cut(s)	510
Eco47I	GGWCC	1 cut(s)	683
EcoRII	CCWGG	2 cut(s)	62, 264
EcoRV	GATATC	1 cut(s)	510
Esp3I	CGTCTC	1 cut(s)	59
FaiI	YATR	7 cut(s)	102, 650, 652, 669, 717, 827, 829
FaqI	GGGAC	1 cut(s)	103
FauI	CCCGC	1 cut(s)	419
FblI	GTMKAC	2 cut(s)	147, 204
Fnu4HI	GCNGC	3 cut(s)	133, 226, 229
FokI	GGATG	3 cut(s)	159, 172, 347
Fsp4HI	GCNGC	3 cut(s)	133, 226, 229
GluI	GCNGC	3 cut(s)	133, 226, 229
GsaI	CCCAGC	1 cut(s)	217
HaeIII	GGCC	2 cut(s)	377, 666
HapII	CCGG	1 cut(s)	378
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	3 cut(s)	475, 585, 704
HpaII	CCGG	1 cut(s)	378
HphI	GGTGA	4 cut(s)	50, 615, 668, 703
Hpy166II	GTNNAC	4 cut(s)	148, 205, 735, 811
Hpy188I	TCNGA	3 cut(s)	345, 474, 514
Hpy188III	TCNNGA	5 cut(s)	404, 431, 505, 602, 763
Hpy8I	GTNNAC	4 cut(s)	148, 205, 735, 811
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	5 cut(s)	136, 186, 509, 557, 718
HpyCH4V	TGCA	3 cut(s)	210, 255, 373
HpyF10VI	GCNNNNNNNGC	3 cut(s)	374, 614, 637
HpyF3I	CTNAG	3 cut(s)	344, 627, 699
Kzo9I	GATC	1 cut(s)	759
LmnI	GCTCC	1 cut(s)	235
Lsp1109I	GCAGC	2 cut(s)	119, 237
LweI	GCATC	1 cut(s)	595
MaeIII	GTNAC	2 cut(s)	621, 656
MalI	GATC	1 cut(s)	761
MboI	GATC	1 cut(s)	759
MboII	GAAGA	3 cut(s)	131, 171, 174
MluCI	AATT	3 cut(s)	96, 785, 792
MlyI	GAGTC	3 cut(s)	484, 579, 698
MseI	TTAA	4 cut(s)	110, 324, 399, 750
MslI	CAYNNNNRTG	2 cut(s)	84, 726
MspA1I	CMGCKG	1 cut(s)	228
MspI	CCGG	1 cut(s)	378
MspR9I	CCNGG	2 cut(s)	64, 266
Mva1269I	GAATGC	1 cut(s)	468
MvaI	CCWGG	2 cut(s)	64, 266
MwoI	GCNNNNNNNGC	3 cut(s)	374, 614, 637
NdeII	GATC	1 cut(s)	759
NlaIV	GGNNCC	1 cut(s)	237
NmuCI	GTSAC	2 cut(s)	621, 656
OliI	CACNNNNGTG	1 cut(s)	84
PaqCI	CACCTGC	1 cut(s)	454
PctI	GAATGC	1 cut(s)	468
PkrI	GCNGC	3 cut(s)	134, 227, 230
PleI	GAGTC	3 cut(s)	483, 579, 698
PpsI	GAGTC	3 cut(s)	483, 579, 698
PsiI	TTATAA	1 cut(s)	102
Psp6I	CCWGG	2 cut(s)	62, 264
PspFI	CCCAGC	1 cut(s)	213
PspGI	CCWGG	2 cut(s)	62, 264
PspN4I	GGNNCC	1 cut(s)	237
PspPI	GGNCC	1 cut(s)	683
PstI	CTGCAG	1 cut(s)	257
RseI	CAYNNNNRTG	2 cut(s)	84, 726
SalI	GTCGAC	1 cut(s)	203
SaqAI	TTAA	4 cut(s)	110, 324, 399, 750
SatI	GCNGC	3 cut(s)	133, 226, 229
Sau3AI	GATC	1 cut(s)	759
Sau96I	GGNCC	1 cut(s)	683
SchI	GAGTC	3 cut(s)	484, 579, 698
ScrFI	CCNGG	2 cut(s)	64, 266
SfaNI	GCATC	1 cut(s)	595
SfcI	CTRYAG	1 cut(s)	253
SinI	GGWCC	1 cut(s)	683
SmiMI	CAYNNNNRTG	2 cut(s)	84, 726
Sse9I	AATT	3 cut(s)	96, 785, 792
SsiI	CCGC	3 cut(s)	228, 412, 466
StyD4I	CCNGG	2 cut(s)	62, 264
TaqI	TCGA	4 cut(s)	204, 354, 360, 394
TasI	AATT	3 cut(s)	96, 785, 792
TauI	GCSGC	1 cut(s)	231
Tru1I	TTAA	4 cut(s)	110, 324, 399, 750
Tru9I	TTAA	4 cut(s)	110, 324, 399, 750
TscAI	CASTG	1 cut(s)	257
TseFI	GTSAC	2 cut(s)	621, 656
TseI	GCWGC	2 cut(s)	132, 225
Tsp45I	GTSAC	2 cut(s)	621, 656
TspDTI	ATGAA	2 cut(s)	36, 174
TspGWI	ACGGA	3 cut(s)	38, 41, 248
TspRI	CASTG	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	683
XapI	RAATTY	1 cut(s)	96
XmiI	GTMKAC	2 cut(s)	147, 204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.