Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002115

Physical Location & Seq

Genomic Coordinates Reverse (-)

20797198 .. 20797434

Gene Structure 237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGATGTATATAGGCGGGTTGGATAAGGAGGAAAAAGTTGAGGTGAAGTCCATGGCGATGGATTCTGAGAGGGCGAATCCTCTGCACAATTTCAACTTGTCGTGGTATTTGAAGTGGGGGAACCAGAAGCACCTGTGGTGCCTGAATAAGAGCTTCGACGCCAGCGAGAGTGGCGGGGAAAGTTTGGGGTTAATCGGCGATCGTCGGCTCAGAAGATTGAGAGCTCGTTGGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1639

Protein Analysis

79

Amino Acids

9.18

Weight (kDa)

9.57

Isoelectric Point (pI)

62.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25370 AT1G25370 AT1G68340 AT1G68340 AT1G68340
fragaria_vesca	FvH4_4g27050
malus_domestica	MD13G1039500.v1.1 MD16G1040400.v1.1
prunus_persica	Prupe.1G313700_v2.0.a1 Prupe.1G313700_v2.0.a1
pyrus_communis	pycom05g23430 pycom13g03400 pycom13g29000 pycom15g37110 pycom16g03510 pycom17g22390
rosa_chinensis	RchiOBHm_Chr2g0122051 RchiOBHm_Chr4g0434851 RchiOBHm_Chr5g0054211
rosa_laevigata	RLG00000001525 RLG00000006641 RLG00000020224
rosa_multiflora	Rmu_sc0000674.1_g000025 Rmu_sc0002398.1_g000003 Rmu_sc0003726.1_g000003 Rmu_sc0005624.1_g000003 Rmu_sc0009656.1_g000005
rosa_roxburghii	Rroxscaffold_156G00440310 Rroxscaffold_5G00342830 Rroxscaffold_5G00376060 Rroxscaffold_5G00383210
rosa_rugosa	Rorug04G0279400 Rorug04G0279500 Rorug04G0279600
rosa_samantha	Rh1AG099900 Rh2BG456800 Rh4CG259900 Rh4CG358400 Rh4DG337900 Rh7CG341700 Rh7CG453800 Rh7DG393600
rosa_wichuraiana	Rw4G029260 Rw7G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	138
AciI	CCGC	2 cut(s)	15, 174
AcyI	GRCGYC	1 cut(s)	159
AgsI	TTSAA	2 cut(s)	94, 112
AluBI	AGCT	2 cut(s)	153, 224
AluI	AGCT	2 cut(s)	153, 224
Alw21I	GWGCWC	1 cut(s)	226
AsuHPI	GGTGA	1 cut(s)	55
BanI	GGYRCC	1 cut(s)	138
BanII	GRGCYC	1 cut(s)	226
Bbv12I	GWGCWC	1 cut(s)	226
BccI	CCATC	1 cut(s)	52
BcgI	CGANNNNNNTGC	2 cut(s)	64, 98
BmiI	GGNNCC	2 cut(s)	122, 140
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	51
BseMII	CTCAG	2 cut(s)	57, 223
BsgI	GTGCAG	1 cut(s)	68
Bsh1285I	CGRYCG	1 cut(s)	202
BshNI	GGYRCC	1 cut(s)	138
BsiEI	CGRYCG	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	226
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp143I	GATC	1 cut(s)	199
Bsp19I	CCATGG	1 cut(s)	51
BspACI	CCGC	2 cut(s)	15, 174
BspCNI	CTCAG	2 cut(s)	58, 222
BspLI	GGNNCC	2 cut(s)	122, 140
BspT107I	GGYRCC	1 cut(s)	138
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	1 cut(s)	199
BssNI	GRCGYC	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	51
BstACI	GRCGYC	1 cut(s)	159
BstC8I	GCNNGC	1 cut(s)	163
BstDEI	CTNAG	2 cut(s)	66, 209
BstDSI	CCRYGG	1 cut(s)	51
BstKTI	GATC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	199
BstMCI	CGRYCG	1 cut(s)	202
BstMWI	GCNNNNNNNGC	1 cut(s)	171
BstXI	CCANNNNNNTGG	1 cut(s)	58
BtgI	CCRYGG	1 cut(s)	51
BtgZI	GCGATG	1 cut(s)	71
Cac8I	GCNNGC	1 cut(s)	163
CseI	GACGC	1 cut(s)	167
CviAII	CATG	1 cut(s)	52
CviJI	RGCY	3 cut(s)	153, 208, 224
CviKI_1	RGCY	3 cut(s)	153, 208, 224
DdeI	CTNAG	2 cut(s)	66, 209
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
Ecl136II	GAGCTC	1 cut(s)	224
Eco130I	CCWWGG	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	226
Eco53kI	GAGCTC	1 cut(s)	224
EcoICRI	GAGCTC	1 cut(s)	224
EcoT14I	CCWWGG	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	1 cut(s)	55
FaiI	YATR	3 cut(s)	9, 11, 53
FatI	CATG	1 cut(s)	51
FauI	CCCGC	2 cut(s)	8, 167
FriOI	GRGCYC	1 cut(s)	226
HgaI	GACGC	1 cut(s)	167
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	1 cut(s)	55
HinfI	GANTC	2 cut(s)	62, 76
HphI	GGTGA	1 cut(s)	55
Hpy188I	TCNGA	2 cut(s)	67, 212
Hpy99I	CGWCG	2 cut(s)	161, 207
HpyCH4V	TGCA	1 cut(s)	85
HpyF10VI	GCNNNNNNNGC	1 cut(s)	171
HpyF3I	CTNAG	2 cut(s)	66, 209
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	1 cut(s)	55
Kzo9I	GATC	1 cut(s)	199
LpnPI	CCDG	4 cut(s)	137, 146, 155, 175
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	1 cut(s)	225
MhlI	GDGCHC	1 cut(s)	226
MluCI	AATT	1 cut(s)	88
MnlI	CCTC	4 cut(s)	22, 34, 63, 90
MseI	TTAA	1 cut(s)	191
MslI	CAYNNNNRTG	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	171
NcoI	CCATGG	1 cut(s)	51
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	1 cut(s)	55
NlaIV	GGNNCC	2 cut(s)	122, 140
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PfeI	GAWTC	2 cut(s)	62, 76
Ple19I	CGATCG	1 cut(s)	202
Psp124BI	GAGCTC	1 cut(s)	226
PspN4I	GGNNCC	2 cut(s)	122, 140
PvuI	CGATCG	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	56
SacI	GAGCTC	1 cut(s)	226
SaqAI	TTAA	1 cut(s)	191
Sau3AI	GATC	1 cut(s)	199
SduI	GDGCHC	1 cut(s)	226
SetI	ASST	4 cut(s)	45, 135, 155, 226
SmiMI	CAYNNNNRTG	1 cut(s)	56
Sse9I	AATT	1 cut(s)	88
SsiI	CCGC	2 cut(s)	15, 174
SstI	GAGCTC	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	51
TaqI	TCGA	1 cut(s)	156
TasI	AATT	1 cut(s)	88
TfiI	GAWTC	2 cut(s)	62, 76
Tru1I	TTAA	1 cut(s)	191
Tru9I	TTAA	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.