Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001292

Physical Location & Seq

Genomic Coordinates Forward (+)

9101391 .. 9102291

Gene Structure 901 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTCAAGTCAACTGAACAATACTGCTCCGAGAAAATTGAAGATGCCACCTGAAACGGCCAAGTCTTTGAATTCTATGAAAATTTATAGGAAGATTATGTATTATGGGGGAAGCTATCAATTCAAGCAATGTATGAAGATTGTGGGCATGTATGGTGATGGGTTAAAACTTCCTCACCAAGTAATAGATTCCTTGAACAATGGTCAGAGTAGTGATGAAATTGCTGAGTTTCAATGGCAGAGACTAATCCGAGAGTTGTCAGACAAAGGGAAGCTCAGGAATTGTATTGCTGTGTGTGACATTCCTGAAAGCATGAGAGGGACAACCAACGAAACAGTCTGCATTGCAATGGGGTTATTGATTTCGGAACTGAGTGAATATCCATGGAAAGGAAAGGTTTTCTCTTTCAGTGATTTTCCCAAGCTTCATAAGTTTGAAGGAGAGAATCTTCGATCGAAATGTGAGTTCATGAAGCAGCATATGGAATCTGCAAAGAAACTGAATTTCGGAGAGATTTACGACGGAGTGTTGGAGATTGCCATCAAAGAAAAGCTAGGGCACCATCAGATTCCGCAGAGGATTTTTGTGTTCACAGACAAGGATTTTGACATGGCATTCAAAAACGATTGGTTTGATGATTATGCAAAGGCTCTTTATGATTACAAAAATAGAGGGTATTTGTTTCATGTGCCAGACATGGTATTATGGAATCTTAAGGGTTCCATTTCTAAGCCAATGGCCATTTATAGCCTAGTGAAGGACCAGGATGTGGGGATGATTATTACCGGGTTTTCTAGCAATCTGCTTAGGCACCTTATGGTTTCAGTTACAGTTTCGCACCTAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2828

Protein Analysis

282

Amino Acids

32.5

Weight (kDa)

8.77

Isoelectric Point (pI)

30.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7788	PF25043	94 - 275	3e-39	Domain of unknown function (DUF7788)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001292)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04500 FvH4_2g04520 FvH4_2g04540 FvH4_2g04550
malus_domestica	MD05G1095800.v1.1 MD05G1215400.v1.1
prunus_persica	Prupe.8G139800_v2.0.a1 Prupe.8G139900_v2.0.a1 Prupe.8G140000_v2.0.a1 Prupe.8G140100_v2.0.a1 Prupe.8G140200_v2.0.a1
pyrus_communis	pycom05g09450
rosa_chinensis	RchiOBHm_Chr6g0254021 RchiOBHm_Chr6g0254031 RchiOBHm_Chr6g0254051 RchiOBHm_Chr6g0254071 RchiOBHm_Chr6g0254131
rosa_laevigata	RLG00000014941 RLG00000014945 RLG00000014947 RLG00000014948 RLG00000028713
rosa_multiflora	Rmu_co8068492.1_g000001 Rmu_co8292957.1_g000001 Rmu_sc0000010.1_g000029 Rmu_sc0001716.1_g000022 Rmu_sc0001716.1_g000026 Rmu_sc0001716.1_g000030
rosa_roxburghii	Rroxscaffold_7G00211140 Rroxscaffold_7G00211260 Rroxscaffold_7G00211290 Rroxscaffold_7G00211300
rosa_rugosa	Rorug05G0549000
rosa_samantha	Rh6AG065500 Rh6AG065600 Rh6AG065800 Rh6AG066400 Rh6BG058400 Rh6BG058600 Rh6BG059500 Rh6CG058500 Rh6CG058600 Rh6CG058700 Rh6CG058800 Rh6CG059100 Rh6CG059200 Rh6DG055300 Rh6DG055400 Rh6DG055500 Rh6DG055600 Rh6DG056000 Rh6DG056100
rosa_wichuraiana	Rw6G005770 Rw6G005790 Rw6G005830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	558, 810
AccB7I	CCANNNNNTGG	1 cut(s)	769
AciI	CCGC	1 cut(s)	572
AcoI	YGGCCR	2 cut(s)	57, 738
AcsI	RAATTY	3 cut(s)	70, 81, 502
AfiI	CCNNNNNNNGG	3 cut(s)	389, 757, 769
AflII	CTTAAG	1 cut(s)	713
AgsI	TTSAA	7 cut(s)	40, 70, 124, 196, 233, 437, 619
AjnI	CCWGG	1 cut(s)	762
AluBI	AGCT	4 cut(s)	114, 274, 424, 553
AluI	AGCT	4 cut(s)	114, 274, 424, 553
Alw26I	GTCTC	1 cut(s)	235
AoxI	GGCC	2 cut(s)	57, 738
ApeKI	GCWGC	1 cut(s)	475
ApoI	RAATTY	3 cut(s)	70, 81, 502
ArsI	GACNNNNNNTTYG	2 cut(s)	587, 619
AspS9I	GGNCC	1 cut(s)	760
AsuC2I	CCSGG	1 cut(s)	787
AsuHPI	GGTGA	2 cut(s)	167, 167
AvaII	GGWCC	1 cut(s)	760
BaeGI	GKGCMC	1 cut(s)	561
BalI	TGGCCA	1 cut(s)	740
BanI	GGYRCC	2 cut(s)	558, 810
BbvI	GCAGC	1 cut(s)	487
BccI	CCATC	3 cut(s)	152, 548, 570
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	1 cut(s)	764
BcnI	CCSGG	1 cut(s)	787
BcoDI	GTCTC	1 cut(s)	235
BfaI	CTAG	3 cut(s)	554, 752, 795
BfrI	CTTAAG	1 cut(s)	713
BisI	GCNGC	1 cut(s)	476
BlsI	GCNGC	1 cut(s)	477
Bme1390I	CCNGG	2 cut(s)	764, 787
Bme18I	GGWCC	1 cut(s)	760
BmgT120I	GGNCC	1 cut(s)	760
BmiI	GGNNCC	3 cut(s)	560, 721, 812
BmrFI	CCNGG	2 cut(s)	764, 787
BmsI	GCATC	1 cut(s)	33
Bpu10I	CCTNAGC	2 cut(s)	275, 806
BpuMI	CCSGG	1 cut(s)	787
BsaBI	GATNNNNATC	1 cut(s)	539
BsaJI	CCNNGG	1 cut(s)	383
Bsc4I	CCNNNNNNNGG	3 cut(s)	389, 757, 769
Bse3DI	GCAATG	3 cut(s)	134, 342, 354
Bse8I	GATNNNNATC	1 cut(s)	539
BseBI	CCWGG	1 cut(s)	764
BseDI	CCNNGG	1 cut(s)	383
BseGI	GGATG	2 cut(s)	772, 780
BseJI	GATNNNNATC	1 cut(s)	539
BseLI	CCNNNNNNNGG	3 cut(s)	389, 757, 769
BseMI	GCAATG	3 cut(s)	134, 342, 354
BseMII	CTCAG	3 cut(s)	216, 289, 362
BseSI	GKGCMC	1 cut(s)	561
BseXI	GCAGC	1 cut(s)	487
Bsh1285I	CGRYCG	1 cut(s)	455
BshFI	GGCC	2 cut(s)	59, 740
BshNI	GGYRCC	2 cut(s)	558, 810
BsiEI	CGRYCG	1 cut(s)	455
BsiSI	CCGG	1 cut(s)	786
BslFI	GGGAC	1 cut(s)	334
BslI	CCNNNNNNNGG	3 cut(s)	389, 757, 769
BsmAI	GTCTC	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	334
BsmI	GAATGC	1 cut(s)	614
BsnI	GGCC	2 cut(s)	59, 740
Bsp1286I	GDGCHC	1 cut(s)	561
Bsp143I	GATC	1 cut(s)	452
Bsp19I	CCATGG	1 cut(s)	383
BspACI	CCGC	1 cut(s)	572
BspANI	GGCC	2 cut(s)	59, 740
BspCNI	CTCAG	3 cut(s)	217, 288, 363
BspHI	TCATGA	1 cut(s)	468
BspLI	GGNNCC	3 cut(s)	560, 721, 812
BspT107I	GGYRCC	2 cut(s)	558, 810
BspTI	CTTAAG	1 cut(s)	713
BsrDI	GCAATG	3 cut(s)	134, 342, 354
BssECI	CCNNGG	1 cut(s)	383
BssMI	GATC	1 cut(s)	452
BssT1I	CCWWGG	1 cut(s)	383
Bst2UI	CCWGG	1 cut(s)	764
Bst4CI	ACNGT	2 cut(s)	337, 832
BstAFI	CTTAAG	1 cut(s)	713
BstDEI	CTNAG	5 cut(s)	225, 275, 371, 729, 806
BstDSI	CCRYGG	1 cut(s)	383
BstENI	CCTNNNNNAGG	1 cut(s)	755
BstF5I	GGATG	2 cut(s)	772, 780
BstKTI	GATC	1 cut(s)	455
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	1 cut(s)	452
BstMCI	CGRYCG	1 cut(s)	455
BstNI	CCWGG	1 cut(s)	764
BstNSI	RCATGY	1 cut(s)	151
BstSCI	CCNGG	2 cut(s)	762, 785
BstSLI	GKGCMC	1 cut(s)	561
BstV1I	GCAGC	1 cut(s)	487
BsuRI	GGCC	2 cut(s)	59, 740
BtgI	CCRYGG	1 cut(s)	383
BtsCI	GGATG	2 cut(s)	772, 780
BtsIMutI	CAGTG	1 cut(s)	415
CciI	TCATGA	1 cut(s)	468
Cfr13I	GGNCC	1 cut(s)	760
CviAII	CATG	7 cut(s)	148, 313, 384, 469, 610, 686, 697
CviJI	RGCY	9 cut(s)	59, 114, 274, 424, 553, 650, 733, 740, 750
CviKI_1	RGCY	9 cut(s)	59, 114, 274, 424, 553, 650, 733, 740, 750
DdeI	CTNAG	5 cut(s)	225, 275, 371, 729, 806
DpnI	GATC	1 cut(s)	454
DpnII	GATC	1 cut(s)	452
EaeI	YGGCCR	2 cut(s)	57, 738
Eco130I	CCWWGG	1 cut(s)	383
Eco47I	GGWCC	1 cut(s)	760
EcoNI	CCTNNNNNAGG	1 cut(s)	755
EcoRI	GAATTC	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	762
EcoT14I	CCWWGG	1 cut(s)	383
ErhI	CCWWGG	1 cut(s)	383
FaeI	CATG	7 cut(s)	151, 316, 387, 472, 613, 689, 700
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	7 cut(s)	147, 312, 383, 468, 609, 685, 696
FauNDI	CATATG	1 cut(s)	480
Fnu4HI	GCNGC	1 cut(s)	476
FokI	GGATG	2 cut(s)	779, 787
Fsp4HI	GCNGC	1 cut(s)	476
FspBI	CTAG	3 cut(s)	554, 752, 795
GluI	GCNGC	1 cut(s)	476
HaeIII	GGCC	2 cut(s)	59, 740
HapII	CCGG	1 cut(s)	786
Hin1II	CATG	7 cut(s)	151, 316, 387, 472, 613, 689, 700
HincII	GTYRAC	1 cut(s)	11
HindII	GTYRAC	1 cut(s)	11
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	5 cut(s)	188, 445, 485, 568, 709
HpaII	CCGG	1 cut(s)	786
HphI	GGTGA	2 cut(s)	167, 167
Hpy166II	GTNNAC	2 cut(s)	11, 591
Hpy188I	TCNGA	7 cut(s)	30, 207, 251, 262, 367, 509, 567
Hpy188III	TCNNGA	3 cut(s)	277, 305, 469
Hpy8I	GTNNAC	2 cut(s)	11, 591
Hpy99I	CGWCG	1 cut(s)	524
HpyAV	CCTTC	2 cut(s)	431, 751
HpyCH4III	ACNGT	2 cut(s)	337, 832
HpyCH4V	TGCA	4 cut(s)	342, 347, 491, 644
HpyF3I	CTNAG	5 cut(s)	225, 275, 371, 729, 806
Hsp92II	CATG	7 cut(s)	151, 316, 387, 472, 613, 689, 700
Kzo9I	GATC	1 cut(s)	452
LmnI	GCTCC	1 cut(s)	31
LpnPI	CCDG	7 cut(s)	63, 262, 318, 705, 749, 776, 799
Lsp1109I	GCAGC	1 cut(s)	487
LweI	GCATC	1 cut(s)	33
MaeI	CTAG	3 cut(s)	554, 752, 795
MaeIII	GTNAC	2 cut(s)	296, 826
MalI	GATC	1 cut(s)	454
MboI	GATC	1 cut(s)	452
MboII	GAAGA	4 cut(s)	52, 103, 148, 440
MhlI	GDGCHC	1 cut(s)	561
MlsI	TGGCCA	1 cut(s)	740
MluCI	AATT	8 cut(s)	35, 70, 81, 119, 219, 280, 502, 844
MluNI	TGGCCA	1 cut(s)	740
MmeI	TCCRAC	1 cut(s)	510
MnlI	CCTC	4 cut(s)	183, 311, 570, 665
Mox20I	TGGCCA	1 cut(s)	740
MscI	TGGCCA	1 cut(s)	740
MseI	TTAA	2 cut(s)	164, 714
MslI	CAYNNNNRTG	1 cut(s)	347
Msp20I	TGGCCA	1 cut(s)	740
MspCI	CTTAAG	1 cut(s)	713
MspI	CCGG	1 cut(s)	786
MspR9I	CCNGG	2 cut(s)	764, 787
Mva1269I	GAATGC	1 cut(s)	614
MvaI	CCWGG	1 cut(s)	764
NciI	CCSGG	1 cut(s)	787
NcoI	CCATGG	1 cut(s)	383
NdeI	CATATG	1 cut(s)	480
NdeII	GATC	1 cut(s)	452
NlaIII	CATG	7 cut(s)	151, 316, 387, 472, 613, 689, 700
NlaIV	GGNNCC	3 cut(s)	560, 721, 812
NmuCI	GTSAC	1 cut(s)	296
NspI	RCATGY	1 cut(s)	151
PagI	TCATGA	1 cut(s)	468
PctI	GAATGC	1 cut(s)	614
PfeI	GAWTC	5 cut(s)	188, 445, 485, 568, 709
PflMI	CCANNNNNTGG	1 cut(s)	769
PkrI	GCNGC	1 cut(s)	477
Ple19I	CGATCG	1 cut(s)	455
Psp6I	CCWGG	1 cut(s)	762
PspGI	CCWGG	1 cut(s)	762
PspN4I	GGNNCC	3 cut(s)	560, 721, 812
PspPI	GGNCC	1 cut(s)	760
PvuI	CGATCG	1 cut(s)	455
RseI	CAYNNNNRTG	1 cut(s)	347
SaqAI	TTAA	2 cut(s)	164, 714
SatI	GCNGC	1 cut(s)	476
Sau3AI	GATC	1 cut(s)	452
Sau96I	GGNCC	1 cut(s)	760
ScrFI	CCNGG	2 cut(s)	764, 787
SduI	GDGCHC	1 cut(s)	561
SetI	ASST	8 cut(s)	52, 116, 276, 399, 426, 555, 816, 843
SfaNI	GCATC	1 cut(s)	33
SinI	GGWCC	1 cut(s)	760
SmiMI	CAYNNNNRTG	1 cut(s)	347
SmlI	CTYRAG	1 cut(s)	713
SmoI	CTYRAG	1 cut(s)	713
Sse9I	AATT	8 cut(s)	35, 70, 81, 119, 219, 280, 502, 844
SsiI	CCGC	1 cut(s)	572
SspMI	CTAG	3 cut(s)	554, 752, 795
StyD4I	CCNGG	2 cut(s)	762, 785
StyI	CCWWGG	1 cut(s)	383
TaaI	ACNGT	2 cut(s)	337, 832
TaqI	TCGA	2 cut(s)	451, 455
TasI	AATT	8 cut(s)	35, 70, 81, 119, 219, 280, 502, 844
TfiI	GAWTC	5 cut(s)	188, 445, 485, 568, 709
Tru1I	TTAA	2 cut(s)	164, 714
Tru9I	TTAA	2 cut(s)	164, 714
TscAI	CASTG	1 cut(s)	415
TseFI	GTSAC	1 cut(s)	296
TseI	GCWGC	1 cut(s)	475
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	7 cut(s)	92, 149, 231, 416, 457, 485, 674
TspGWI	ACGGA	1 cut(s)	537
TspRI	CASTG	1 cut(s)	415
Van91I	CCANNNNNTGG	1 cut(s)	769
Vha464I	CTTAAG	1 cut(s)	713
VpaK11BI	GGWCC	1 cut(s)	760
XagI	CCTNNNNNAGG	1 cut(s)	755
XapI	RAATTY	3 cut(s)	70, 81, 502
XceI	RCATGY	1 cut(s)	151
XspI	CTAG	3 cut(s)	554, 752, 795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.