RchiOBHm_Chr3g0490971

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
37607555 .. 37609714
2160 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1410 bp
ATGAAATGGAGGAACCCAAAGTGCAATGGGGTTCTTCCTCCAGGTTCAATGGGTTTGCCTCTCATCGGTGAGACACTCAGTTTGATCATTCCAAGCTACTCCCTAGATCTTCACCCTTTCATAAAGAAAAGACTTGAAAGATATGGACCTATATTTCGGACTAGTTTGGCAGGTAGGCCAGTTGTGATATCAGCTGATCTTGAATTCAATAACTTCCTTTTTCAGCAAGAAGGGAGGTCTGTTAAGTTGTGGTACTTGGATACATTTTCAAAGATCTTCGTGCTGGAAGGTGAATCAAAGATAAACGCAGTGGGCATCGTTCACAAATACGTAAGGAGAGCTTTCTTGAATCACTTTGGCGCTGAGAGGCTTAAGGAAAAGTTGCTCCCTGAAATACAAGAATTCGTCAACAAATGTTTATGTTCTTGGTCAATTCAGGAATCTGTTGAAGTGAAACATGTTGGCTCAGTTATGGTTCTAAATTTTAGTGCAAAGCAGATGATTAGTTATAATGCTGAAAAAGCTACTGATGACCTGAGTGAGAAATATACTAAAATCATAGATGGTCTTATGTCGTTTCCCTTGAATATCCCTGGGACTGCATACTATAATTGTACCAAGCACCAAAAGAAGGTAGAGACCATGTTGAGGGATATGCTCAAGGAGAGACACGATTCACCTGAGACCCAACATGGGGATTTCCTTGATCAAATTGCAAATGACATGGACAAGGAGAAGTTTTTATCAGAGGATTTTATCGTTCACTTGTTATTTGGGGGCTTATTTGCTGCCTTTGAATCTATTTCAGCAGTGTTGGCATTAGCCTTCAGTTTACTTGCAGAGTATCCTTCAGTCTTACAAGAGTTTACTGCTGAGCATGAAGCTATTCTCAAAAATAGAGAAGATCCAAATACTTCACTCACATGGGATGAATATAAATCGATGACTTTTACTCTTCAGGTTATCAACGAAGCTCTTCGGTTGGGTAATGTTGCACCCGGCTTGTTGCGTAGAGCTTTGAGAGACATCCCAGTAAAGGGATTTACAATCCCAGAAGGTTGGACGATTATGGTTGTCACGTCTGCGCTTCAGTTAAATCCCAACACATTTGAGGATCCCATTAAGTTCAATCCATGGCGTTGGAAGGTACGTGTGTATGACAATATTGGTGGAGGAATGAGACAATGTGCTGGGGCAGAGTATAGTAGAGTTTTCTTGTCTACATTTTTCCATGTCTTGGTCACCAAATATAGGTATGTTTCTTATTCTCCTTCTCTCTCTCTTTCTCAAGCGTGTATTCATTTGAACTGTACTATGTTAAAACCAAAGCTTTTTGTAAGGAAATTAATCTGTCATATCTTCAGTATTAATGCAAATTGTTATACAGATCAAGTTGTACAATATCTGTAG

Protein Analysis

469

Amino Acids

53.63

Weight (kDa)

8.42

Isoelectric Point (pI)

36.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 13 - 418 1.7e-44 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 510
Acc36I ACCTGC 1 cut(s) 161
AccB7I CCANNNNNTGG 1 cut(s) 1237
AccI GTMKAC 1 cut(s) 1220
AclWI GGATC 3 cut(s) 899, 1109, 1122
AcsI RAATTY 3 cut(s) 203, 401, 481
AcuI CTGAAG 5 cut(s) 811, 834, 941, 1073, 1345
AfaI GTAC 5 cut(s) 254, 616, 1149, 1312, 1398
AfiI CCNNNNNNNGG 9 cut(s) 65, 631, 648, 693, 694, 1036, 1037, 1237, 1251
AflII CTTAAG 1 cut(s) 371
AflIII ACRYGT 2 cut(s) 457, 1150
AhlI ACTAGT 1 cut(s) 161
AjiI CACGTC 1 cut(s) 1080
AjnI CCWGG 2 cut(s) 40, 592
AluBI AGCT 8 cut(s) 96, 194, 341, 524, 884, 974, 1016, 1330
AluI AGCT 8 cut(s) 96, 194, 341, 524, 884, 974, 1016, 1330
Alw26I GTCTC 6 cut(s) 65, 632, 661, 677, 1017, 1174
AlwI GGATC 3 cut(s) 899, 1109, 1122
AoxI GGCC 1 cut(s) 176
ApeKI GCWGC 1 cut(s) 788
ApoI RAATTY 3 cut(s) 203, 401, 481
ArsI GACNNNNNNTTYG 4 cut(s) 64, 96, 138, 170
AseI ATTAAT 2 cut(s) 1346, 1368
Asp700I GAANNNNTTC 2 cut(s) 885, 975
AspLEI GCGC 2 cut(s) 362, 1087
AspS9I GGNCC 1 cut(s) 146
AsuC2I CCSGG 1 cut(s) 999
AsuHPI GGTGA 5 cut(s) 80, 104, 302, 669, 1234
AvaII GGWCC 1 cut(s) 146
BaeI ACNNNNGTAYC 2 cut(s) 1139, 1172
BamHI GGATCC 1 cut(s) 1114
BbvI GCAGC 1 cut(s) 775
BccI CCATC 1 cut(s) 557
BciT130I CCWGG 2 cut(s) 42, 594
BciVI GTATCC 2 cut(s) 253, 855
BclI TGATCA 2 cut(s) 84, 706
BcnI CCSGG 1 cut(s) 999
BcoDI GTCTC 6 cut(s) 65, 632, 661, 677, 1017, 1174
BcuI ACTAGT 1 cut(s) 161
BfaI CTAG 2 cut(s) 104, 162
BfmI CTRYAG 1 cut(s) 1406
BfoI RGCGCY 1 cut(s) 363
BfrI CTTAAG 1 cut(s) 371
BfuAI ACCTGC 1 cut(s) 161
BfuI GTATCC 2 cut(s) 253, 855
BglII AGATCT 2 cut(s) 106, 273
BisI GCNGC 1 cut(s) 789
BlpI GCTNAGC 1 cut(s) 873
BlsI GCNGC 1 cut(s) 790
Bme1390I CCNGG 3 cut(s) 42, 594, 999
Bme18I GGWCC 1 cut(s) 146
BmgBI CACGTC 1 cut(s) 1080
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 2 cut(s) 14, 1116
BmrFI CCNGG 3 cut(s) 42, 594, 999
BmrI ACTGGG 1 cut(s) 1025
BmsI GCATC 1 cut(s) 324
BmuI ACTGGG 1 cut(s) 1025
BpmI CTGGAG 1 cut(s) 24
Bpu1102I GCTNAGC 1 cut(s) 873
BpuEI CTTGAG 2 cut(s) 644, 1272
BpuMI CCSGG 1 cut(s) 999
Bsa29I ATCGAT 1 cut(s) 941
BsaAI YACGTR 2 cut(s) 331, 1151
BsaI GGTCTC 2 cut(s) 632, 677
BsaJI CCNNGG 3 cut(s) 592, 593, 1133
Bsc4I CCNNNNNNNGG 9 cut(s) 65, 631, 648, 693, 694, 1036, 1037, 1237, 1251
Bse1I ACTGG 2 cut(s) 179, 1031
Bse3DI GCAATG 1 cut(s) 31
BseBI CCWGG 2 cut(s) 42, 594
BseCI ATCGAT 1 cut(s) 941
BseDI CCNNGG 3 cut(s) 592, 593, 1133
BseGI GGATG 2 cut(s) 934, 1026
BseLI CCNNNNNNNGG 9 cut(s) 65, 631, 648, 693, 694, 1036, 1037, 1237, 1251
BseMI GCAATG 1 cut(s) 31
BseMII CTCAG 6 cut(s) 91, 354, 480, 527, 672, 864
BseNI ACTGG 2 cut(s) 179, 1031
BseXI GCAGC 1 cut(s) 775
BseYI CCCAGC 1 cut(s) 1190
BshFI GGCC 1 cut(s) 178
BshVI ATCGAT 1 cut(s) 941
BsiSI CCGG 1 cut(s) 999
BslFI GGGAC 1 cut(s) 610
BslI CCNNNNNNNGG 9 cut(s) 65, 631, 648, 693, 694, 1036, 1037, 1237, 1251
BsmAI GTCTC 6 cut(s) 65, 632, 661, 677, 1017, 1174
BsmFI GGGAC 1 cut(s) 610
BsnI GGCC 1 cut(s) 178
Bso31I GGTCTC 2 cut(s) 632, 677
Bsp1407I TGTACA 1 cut(s) 1396
Bsp143I GATC 8 cut(s) 84, 106, 196, 273, 706, 904, 1114, 1387
Bsp1720I GCTNAGC 1 cut(s) 873
Bsp19I CCATGG 1 cut(s) 1133
BspANI GGCC 1 cut(s) 178
BspCNI CTCAG 6 cut(s) 90, 355, 479, 528, 673, 865
BspDI ATCGAT 1 cut(s) 941
BspLI GGNNCC 2 cut(s) 14, 1116
BspMI ACCTGC 1 cut(s) 161
BspPI GGATC 3 cut(s) 899, 1109, 1122
BspQI GCTCTTC 1 cut(s) 981
BspTI CTTAAG 1 cut(s) 371
BspTNI GGTCTC 2 cut(s) 632, 677
BsrDI GCAATG 1 cut(s) 31
BsrGI TGTACA 1 cut(s) 1396
BsrI ACTGG 2 cut(s) 179, 1031
BssECI CCNNGG 3 cut(s) 592, 593, 1133
BssMI GATC 8 cut(s) 84, 106, 196, 273, 706, 904, 1114, 1387
BssT1I CCWWGG 1 cut(s) 1133
Bst2UI CCWGG 2 cut(s) 42, 594
Bst4CI ACNGT 1 cut(s) 1310
Bst6I CTCTTC 2 cut(s) 960, 981
BstAFI CTTAAG 1 cut(s) 371
BstAUI TGTACA 1 cut(s) 1396
BstBAI YACGTR 2 cut(s) 331, 1151
BstDEI CTNAG 6 cut(s) 77, 363, 466, 536, 681, 873
BstDSI CCRYGG 1 cut(s) 1133
BstEII GGTNACC 1 cut(s) 1240
BstF5I GGATG 2 cut(s) 934, 1026
BstH2I RGCGCY 1 cut(s) 363
BstHHI GCGC 2 cut(s) 362, 1087
BstKTI GATC 8 cut(s) 87, 109, 199, 276, 709, 907, 1117, 1390
BstMAI GTCTC 6 cut(s) 65, 632, 661, 677, 1017, 1174
BstMBI GATC 8 cut(s) 84, 106, 196, 273, 706, 904, 1114, 1387
BstMWI GCNNNNNNNGC 2 cut(s) 521, 815
BstNI CCWGG 2 cut(s) 42, 594
BstNSI RCATGY 1 cut(s) 461
BstPI GGTNACC 1 cut(s) 1240
BstSCI CCNGG 3 cut(s) 40, 592, 997
BstSFI CTRYAG 1 cut(s) 1406
BstSNI TACGTA 1 cut(s) 331
BstV1I GCAGC 1 cut(s) 775
BstX2I RGATCY 4 cut(s) 106, 273, 904, 1114
BstXI CCANNNNNNTGG 2 cut(s) 1059, 1140
BstYI RGATCY 4 cut(s) 106, 273, 904, 1114
Bsu15I ATCGAT 1 cut(s) 941
BsuI GTATCC 2 cut(s) 253, 855
BsuRI GGCC 1 cut(s) 178
BsuTUI ATCGAT 1 cut(s) 941
BtgI CCRYGG 1 cut(s) 1133
BtrI CACGTC 1 cut(s) 1080
BtsCI GGATG 2 cut(s) 934, 1026
BtsI GCAGTG 2 cut(s) 315, 816
BtsIMutI CAGTG 2 cut(s) 315, 816
BveI ACCTGC 1 cut(s) 161
CfoI GCGC 2 cut(s) 362, 1087
Cfr13I GGNCC 1 cut(s) 146
ClaI ATCGAT 1 cut(s) 941
Csp6I GTAC 5 cut(s) 253, 615, 1148, 1311, 1397
CspCI CAANNNNNGTGG 2 cut(s) 1150, 1185
CviAII CATG 8 cut(s) 458, 643, 692, 724, 878, 924, 1134, 1232
CviQI GTAC 5 cut(s) 253, 615, 1148, 1311, 1397
DdeI CTNAG 6 cut(s) 77, 363, 466, 536, 681, 873
DpnI GATC 8 cut(s) 86, 108, 198, 275, 708, 906, 1116, 1389
DpnII GATC 8 cut(s) 84, 106, 196, 273, 706, 904, 1114, 1387
Eam1104I CTCTTC 2 cut(s) 960, 981
EarI CTCTTC 2 cut(s) 960, 981
Eco105I TACGTA 1 cut(s) 331
Eco130I CCWWGG 1 cut(s) 1133
Eco31I GGTCTC 2 cut(s) 632, 677
Eco32I GATATC 1 cut(s) 189
Eco47I GGWCC 1 cut(s) 146
Eco57I CTGAAG 5 cut(s) 811, 834, 941, 1073, 1345
Eco91I GGTNACC 1 cut(s) 1240
EcoO65I GGTNACC 1 cut(s) 1240
EcoRI GAATTC 2 cut(s) 203, 401
EcoRII CCWGG 2 cut(s) 40, 592
EcoRV GATATC 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 1133
ErhI CCWWGG 1 cut(s) 1133
FaeI CATG 8 cut(s) 461, 646, 695, 727, 881, 927, 1137, 1235
FalI AAGNNNNNCTT 2 cut(s) 325, 357
FaqI GGGAC 1 cut(s) 610
FatI CATG 8 cut(s) 457, 642, 691, 723, 877, 923, 1133, 1231
FbaI TGATCA 2 cut(s) 84, 706
FblI GTMKAC 1 cut(s) 1220
Fnu4HI GCNGC 1 cut(s) 789
FokI GGATG 2 cut(s) 941, 1013
Fsp4HI GCNGC 1 cut(s) 789
FspBI CTAG 2 cut(s) 104, 162
GlaI GCGC 2 cut(s) 361, 1086
GluI GCNGC 1 cut(s) 789
GsaI CCCAGC 1 cut(s) 1194
GsuI CTGGAG 1 cut(s) 24
HaeII RGCGCY 1 cut(s) 363
HaeIII GGCC 1 cut(s) 178
HapII CCGG 1 cut(s) 999
HhaI GCGC 2 cut(s) 362, 1087
Hin1II CATG 8 cut(s) 461, 646, 695, 727, 881, 927, 1137, 1235
Hin6I GCGC 2 cut(s) 360, 1085
HinP1I GCGC 2 cut(s) 360, 1085
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HindIII AAGCTT 1 cut(s) 1328
HinfI GANTC 5 cut(s) 293, 349, 440, 674, 797
HpaII CCGG 1 cut(s) 999
HphI GGTGA 5 cut(s) 80, 104, 302, 669, 1234
Hpy166II GTNNAC 6 cut(s) 322, 409, 763, 833, 867, 1221
Hpy188I TCNGA 2 cut(s) 159, 748
Hpy188III TCNNGA 3 cut(s) 200, 346, 437
Hpy8I GTNNAC 6 cut(s) 322, 409, 763, 833, 867, 1221
HpyAV CCTTC 8 cut(s) 224, 281, 625, 835, 858, 1049, 1138, 1281
HpyCH4III ACNGT 1 cut(s) 1310
HpyCH4IV ACGT 3 cut(s) 330, 1079, 1150
HpyCH4V TGCA 7 cut(s) 24, 491, 602, 716, 839, 995, 1373
HpyF10VI GCNNNNNNNGC 2 cut(s) 521, 815
HpyF3I CTNAG 6 cut(s) 77, 363, 466, 536, 681, 873
HpySE526I ACGT 3 cut(s) 330, 1079, 1150
Hsp92II CATG 8 cut(s) 461, 646, 695, 727, 881, 927, 1137, 1235
HspAI GCGC 2 cut(s) 360, 1085
Ksp22I TGATCA 2 cut(s) 84, 706
Kzo9I GATC 8 cut(s) 84, 106, 196, 273, 706, 904, 1114, 1387
LguI GCTCTTC 1 cut(s) 981
LmnI GCTCC 1 cut(s) 390
Lsp1109I GCAGC 1 cut(s) 775
LweI GCATC 1 cut(s) 324
MaeI CTAG 2 cut(s) 104, 162
MaeII ACGT 3 cut(s) 330, 1079, 1150
MaeIII GTNAC 2 cut(s) 1075, 1240
MalI GATC 8 cut(s) 86, 108, 198, 275, 708, 906, 1116, 1389
MboI GATC 8 cut(s) 84, 106, 196, 273, 706, 904, 1114, 1387
MboII GAAGA 7 cut(s) 26, 101, 268, 914, 947, 968, 1351
MflI RGATCY 4 cut(s) 106, 273, 904, 1114
MluCI AATT 8 cut(s) 203, 401, 432, 481, 610, 711, 1343, 1375
MmeI TCCRAC 2 cut(s) 1040, 1121
MnlI CCTC 9 cut(s) 3, 48, 69, 228, 360, 642, 742, 1105, 1166
MroXI GAANNNNTTC 2 cut(s) 885, 975
MseI TTAA 7 cut(s) 243, 372, 1094, 1122, 1319, 1346, 1368
MslI CAYNNNNRTG 1 cut(s) 922
MspA1I CMGCKG 1 cut(s) 194
MspCI CTTAAG 1 cut(s) 371
MspI CCGG 1 cut(s) 999
MspR9I CCNGG 3 cut(s) 42, 594, 999
MvaI CCWGG 2 cut(s) 42, 594
MwoI GCNNNNNNNGC 2 cut(s) 521, 815
NciI CCSGG 1 cut(s) 999
NcoI CCATGG 1 cut(s) 1133
NdeII GATC 8 cut(s) 84, 106, 196, 273, 706, 904, 1114, 1387
NlaIII CATG 8 cut(s) 461, 646, 695, 727, 881, 927, 1137, 1235
NlaIV GGNNCC 2 cut(s) 14, 1116
NmuCI GTSAC 2 cut(s) 1075, 1240
NspI RCATGY 1 cut(s) 461
PasI CCCWGGG 1 cut(s) 593
PciI ACATGT 1 cut(s) 457
PciSI GCTCTTC 1 cut(s) 981
PdmI GAANNNNTTC 2 cut(s) 885, 975
PfeI GAWTC 5 cut(s) 293, 349, 440, 674, 797
PflMI CCANNNNNTGG 1 cut(s) 1237
PkrI GCNGC 1 cut(s) 790
Ppu21I YACGTR 2 cut(s) 331, 1151
PscI ACATGT 1 cut(s) 457
PshBI ATTAAT 2 cut(s) 1346, 1368
PsiI TTATAA 1 cut(s) 510
Psp6I CCWGG 2 cut(s) 40, 592
PspEI GGTNACC 1 cut(s) 1240
PspFI CCCAGC 1 cut(s) 1190
PspGI CCWGG 2 cut(s) 40, 592
PspN4I GGNNCC 2 cut(s) 14, 1116
PspPI GGNCC 1 cut(s) 146
PsuI RGATCY 4 cut(s) 106, 273, 904, 1114
PvuII CAGCTG 1 cut(s) 194
RsaI GTAC 5 cut(s) 254, 616, 1149, 1312, 1398
RsaNI GTAC 5 cut(s) 253, 615, 1148, 1311, 1397
RseI CAYNNNNRTG 1 cut(s) 922
SapI GCTCTTC 1 cut(s) 981
SaqAI TTAA 7 cut(s) 243, 372, 1094, 1122, 1319, 1346, 1368
SatI GCNGC 1 cut(s) 789
Sau3AI GATC 8 cut(s) 84, 106, 196, 273, 706, 904, 1114, 1387
Sau96I GGNCC 1 cut(s) 146
ScrFI CCNGG 3 cut(s) 42, 594, 999
SfaNI GCATC 1 cut(s) 324
SfcI CTRYAG 1 cut(s) 1406
SinI GGWCC 1 cut(s) 146
SmiMI CAYNNNNRTG 1 cut(s) 922
SmlI CTYRAG 3 cut(s) 371, 659, 1287
SmoI CTYRAG 3 cut(s) 371, 659, 1287
SnaBI TACGTA 1 cut(s) 331
SpeI ACTAGT 1 cut(s) 161
Sse9I AATT 8 cut(s) 203, 401, 432, 481, 610, 711, 1343, 1375
SspI AATATT 1 cut(s) 1165
SspMI CTAG 2 cut(s) 104, 162
StyD4I CCNGG 3 cut(s) 40, 592, 997
StyI CCWWGG 1 cut(s) 1133
TaaI ACNGT 1 cut(s) 1310
TaiI ACGT 3 cut(s) 333, 1082, 1153
TaqI TCGA 1 cut(s) 941
TasI AATT 8 cut(s) 203, 401, 432, 481, 610, 711, 1343, 1375
TatI WGTACW 2 cut(s) 1310, 1396
TfiI GAWTC 5 cut(s) 293, 349, 440, 674, 797
Tru1I TTAA 7 cut(s) 243, 372, 1094, 1122, 1319, 1346, 1368
Tru9I TTAA 7 cut(s) 243, 372, 1094, 1122, 1319, 1346, 1368
TscAI CASTG 2 cut(s) 315, 816
TseFI GTSAC 2 cut(s) 1075, 1240
TseI GCWGC 1 cut(s) 788
Tsp45I GTSAC 2 cut(s) 1075, 1240
TspDTI ATGAA 5 cut(s) 17, 109, 894, 945, 1289
TspRI CASTG 2 cut(s) 315, 816
Van91I CCANNNNNTGG 1 cut(s) 1237
Vha464I CTTAAG 1 cut(s) 371
VpaK11BI GGWCC 1 cut(s) 146
VspI ATTAAT 2 cut(s) 1346, 1368
XapI RAATTY 3 cut(s) 203, 401, 481
XceI RCATGY 1 cut(s) 461
XmiI GTMKAC 1 cut(s) 1220
XmnI GAANNNNTTC 2 cut(s) 885, 975
XspI CTAG 2 cut(s) 104, 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.