Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001131

Physical Location & Seq

Genomic Coordinates Forward (+)

1631747 .. 1633077

Gene Structure 1331 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTTGGCTGCAATGCATGGCAAGATCTCTTGCGTGCGAAAGCTTCTTGAAGTAGGAGCAAATGTATTAATGTTCGATTCCCTTCACGAAAGAACTTGTTTGCATTATGCTGCTTACTATGGCCATGCCAATTGCCTCCAGGCCATTGTTTCCGCTGCTCAATCAAATCATGTAGCTGTTTCATGGCCTGAATGTGTACGTATATTGTTAGACAACGGAGCTCTTGTTTGTGCTTCAACTGGCGGATATGGCTGCCCAGGAAGCACTCCGCTGCATTTGGCGGCAAGAGGGGGATCTCTGGATTGTATACAAGGATTGTTGGCATGGGGTGCAGATCGCGCTCAAAGAGATGGATCGGGGAGAATGCCATATATAGTTGCTTTGAAACACAAACATGGAGCTTGTGCAGCTATGCTAAATCCGTCATCAGCTGAGCCTCTGGTGTGGCCATCACCTTTGAAGTTTATTAGTGAGCTTAGTGAGGAGGCAAAAGCTTTGTTAGAACAGGCCTTAACGGAGGCAAACAAGGAGAGGGAGAAGAATATCTTGAAAGGAAGCGGTTACTCTCTTGCATCTCCATCGCATTCTGATGTGCATTCTGATATAGGGATGGATGACAATCTTTCTGAGGTAATTTCCTACCTTCCTGTCTATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051704 GO:0051707 GO:0051865 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5

Protein Analysis

219

Amino Acids

23.45

Weight (kDa)

6.18

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	1 - 52	5e-07	Ankyrin repeats (3 copies)
Ank_4	PF13637	3 - 47	1.3e-06	Ankyrin repeats (many copies)
Ank_2	PF12796	60 - 139	3.5e-07	Ankyrin repeats (3 copies)
Ank	PF00023	87 - 117	9.1e-06	Ankyrin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28840 AT2G28840
fragaria_vesca	FvH4_3g35930 FvH4_6g13990 FvH4_6g13990 FvH4_6g13990
malus_domestica	MD03G1096100.v1.1 MD04G1126800.v1.1 MD11G1110600.v1.1 MD12G1078200.v1.1
prunus_persica	Prupe.6G079100_v2.0.a1 Prupe.6G253500_v2.0.a1 Prupe.6G253500_v2.0.a1
pyrus_communis	pycom03g07860 pycom04g11370 pycom11g09140 pycom12g13520
rosa_chinensis	RchiOBHm_Chr1g0314361 RchiOBHm_Chr1g0357421 RchiOBHm_Chr2g0133681 RchiOBHm_Chr3g0466811 RchiOBHm_Chr3g0487431 RchiOBHm_Chr5g0038661 RchiOBHm_Chr5g0051561 RchiOBHm_Chr5g0064211
rosa_laevigata	RLG00000024550 RLG00000035712
rosa_multiflora	Rmu_sc0000147.1_g000071 Rmu_sc0000259.1_g000037 Rmu_sc0000259.1_g000038 Rmu_sc0000924.1_g000027 Rmu_sc0008017.1_g000003 Rmu_sc0011921.1_g000015 Rmu_ssc0000170.1_g000007
rosa_roxburghii	Rroxscaffold_1G00016740 Rroxscaffold_1G00038780 Rroxscaffold_4G00300840 Rroxscaffold_6G00414120
rosa_rugosa	Rorug03G0083800 Rorug05G0363400
rosa_samantha	Rh2AG384600 Rh2BG197500 Rh2BG371900 Rh2BG492700 Rh2DG501500 Rh3AG131400 Rh3BG152500 Rh3DG153600 Rh5AG421300 Rh5BG362000 Rh5BG436900 Rh5CG459600 Rh5DG450300 Rh6DG133300 Rh7AG222900
rosa_wichuraiana	Rw2G039230 Rw3G012420 Rw5G039670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	307
AccII	CGCG	1 cut(s)	339
AciI	CCGC	5 cut(s)	153, 243, 269, 281, 558
AclWI	GGATC	2 cut(s)	301, 361
AcoI	YGGCCR	2 cut(s)	121, 446
AfaI	GTAC	1 cut(s)	198
AgsI	TTSAA	5 cut(s)	50, 237, 385, 460, 550
AjnI	CCWGG	2 cut(s)	138, 256
AluBI	AGCT	8 cut(s)	43, 176, 221, 401, 410, 431, 475, 494
AluI	AGCT	8 cut(s)	43, 176, 221, 401, 410, 431, 475, 494
Alw21I	GWGCWC	1 cut(s)	223
AlwI	GGATC	2 cut(s)	301, 361
AoxI	GGCC	5 cut(s)	121, 141, 185, 446, 507
ApeKI	GCWGC	6 cut(s)	8, 110, 155, 252, 271, 407
AseI	ATTAAT	1 cut(s)	68
AspLEI	GCGC	1 cut(s)	341
AsuHPI	GGTGA	1 cut(s)	444
BalI	TGGCCA	2 cut(s)	123, 448
BanII	GRGCYC	1 cut(s)	223
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	5 cut(s)	97, 142, 239, 258, 419
BccI	CCATC	4 cut(s)	344, 457, 586, 604
BcgI	CGANNNNNNTGC	2 cut(s)	561, 595
BciT130I	CCWGG	2 cut(s)	140, 258
BglII	AGATCT	1 cut(s)	24
BisI	GCNGC	7 cut(s)	9, 111, 156, 253, 272, 282, 408
BlpI	GCTNAGC	1 cut(s)	432
BlsI	GCNGC	7 cut(s)	10, 112, 157, 254, 273, 283, 409
Bme1390I	CCNGG	2 cut(s)	140, 258
BmrFI	CCNGG	2 cut(s)	140, 258
BmsI	GCATC	1 cut(s)	581
BpmI	CTGGAG	1 cut(s)	122
Bpu1102I	GCTNAGC	1 cut(s)	432
BsaAI	YACGTR	1 cut(s)	200
BsaBI	GATNNNNATC	1 cut(s)	618
BsaJI	CCNNGG	1 cut(s)	256
BsaXI	ACNNNNNCTCC	4 cut(s)	48, 78, 210, 240
Bse1I	ACTGG	1 cut(s)	244
Bse3DI	GCAATG	1 cut(s)	18
Bse8I	GATNNNNATC	1 cut(s)	618
BseBI	CCWGG	2 cut(s)	140, 258
BseDI	CCNNGG	1 cut(s)	256
BseGI	GGATG	2 cut(s)	615, 619
BseJI	GATNNNNATC	1 cut(s)	618
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	2 cut(s)	423, 618
BseNI	ACTGG	1 cut(s)	244
BseRI	GAGGAG	1 cut(s)	497
BseXI	GCAGC	5 cut(s)	97, 142, 239, 258, 419
BsgI	GTGCAG	2 cut(s)	351, 426
Bsh1236I	CGCG	1 cut(s)	339
BshFI	GGCC	5 cut(s)	123, 143, 187, 448, 509
BsiHKAI	GWGCWC	1 cut(s)	223
BsmI	GAATGC	3 cut(s)	369, 583, 595
BsnI	GGCC	5 cut(s)	123, 143, 187, 448, 509
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	4 cut(s)	24, 293, 334, 353
Bsp1720I	GCTNAGC	1 cut(s)	432
BspACI	CCGC	5 cut(s)	153, 243, 269, 281, 558
BspANI	GGCC	5 cut(s)	123, 143, 187, 448, 509
BspCNI	CTCAG	2 cut(s)	424, 619
BspFNI	CGCG	1 cut(s)	339
BspPI	GGATC	2 cut(s)	301, 361
BsrDI	GCAATG	1 cut(s)	18
BsrI	ACTGG	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	4 cut(s)	24, 293, 334, 353
BssNAI	GTATAC	1 cut(s)	308
Bst1107I	GTATAC	1 cut(s)	308
Bst2UI	CCWGG	2 cut(s)	140, 258
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstBAI	YACGTR	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	35
BstDEI	CTNAG	3 cut(s)	432, 476, 627
BstF5I	GGATG	2 cut(s)	615, 619
BstFNI	CGCG	1 cut(s)	339
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	4 cut(s)	27, 296, 337, 356
BstMBI	GATC	4 cut(s)	24, 293, 334, 353
BstMWI	GCNNNNNNNGC	5 cut(s)	249, 261, 329, 338, 407
BstNI	CCWGG	2 cut(s)	140, 258
BstSCI	CCNGG	2 cut(s)	138, 256
BstSNI	TACGTA	1 cut(s)	200
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	5 cut(s)	97, 142, 239, 258, 419
BstX2I	RGATCY	2 cut(s)	24, 293
BstYI	RGATCY	2 cut(s)	24, 293
BstZ17I	GTATAC	1 cut(s)	308
BsuRI	GGCC	5 cut(s)	123, 143, 187, 448, 509
BtgZI	GCGATG	1 cut(s)	564
BtsCI	GGATG	2 cut(s)	615, 619
Cac8I	GCNNGC	1 cut(s)	35
CfoI	GCGC	1 cut(s)	341
Csp6I	GTAC	1 cut(s)	197
CviAII	CATG	6 cut(s)	17, 125, 170, 183, 324, 395
CviQI	GTAC	1 cut(s)	197
DdeI	CTNAG	3 cut(s)	432, 476, 627
DpnI	GATC	4 cut(s)	26, 295, 336, 355
DpnII	GATC	4 cut(s)	24, 293, 334, 353
EaeI	YGGCCR	2 cut(s)	121, 446
EciI	GGCGGA	1 cut(s)	258
Ecl136II	GAGCTC	1 cut(s)	221
Eco105I	TACGTA	1 cut(s)	200
Eco147I	AGGCCT	1 cut(s)	509
Eco24I	GRGCYC	1 cut(s)	223
Eco53kI	GAGCTC	1 cut(s)	221
EcoICRI	GAGCTC	1 cut(s)	221
EcoRII	CCWGG	2 cut(s)	138, 256
EcoT22I	ATGCAT	1 cut(s)	18
EcoT38I	GRGCYC	1 cut(s)	223
FaeI	CATG	6 cut(s)	20, 128, 173, 186, 327, 398
FalI	AAGNNNNNCTT	2 cut(s)	530, 562
FatI	CATG	6 cut(s)	16, 124, 169, 182, 323, 394
FblI	GTMKAC	1 cut(s)	307
Fnu4HI	GCNGC	7 cut(s)	9, 111, 156, 253, 272, 282, 408
FokI	GGATG	2 cut(s)	622, 626
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	7 cut(s)	9, 111, 156, 253, 272, 282, 408
GlaI	GCGC	1 cut(s)	340
GluI	GCNGC	7 cut(s)	9, 111, 156, 253, 272, 282, 408
GsuI	CTGGAG	1 cut(s)	122
HaeIII	GGCC	5 cut(s)	123, 143, 187, 448, 509
HhaI	GCGC	1 cut(s)	341
Hin1II	CATG	6 cut(s)	20, 128, 173, 186, 327, 398
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HindIII	AAGCTT	2 cut(s)	41, 492
HinfI	GANTC	1 cut(s)	77
HphI	GGTGA	1 cut(s)	444
Hpy166II	GTNNAC	2 cut(s)	197, 308
Hpy188I	TCNGA	3 cut(s)	589, 601, 628
Hpy188III	TCNNGA	4 cut(s)	47, 86, 299, 547
Hpy8I	GTNNAC	2 cut(s)	197, 308
HpyAV	CCTTC	2 cut(s)	92, 653
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	8 cut(s)	11, 16, 103, 274, 332, 407, 572, 595
HpyF10VI	GCNNNNNNNGC	5 cut(s)	249, 261, 329, 338, 407
HpyF3I	CTNAG	3 cut(s)	432, 476, 627
HpySE526I	ACGT	1 cut(s)	199
Hsp92II	CATG	6 cut(s)	20, 128, 173, 186, 327, 398
HspAI	GCGC	1 cut(s)	339
Kzo9I	GATC	4 cut(s)	24, 293, 334, 353
LmnI	GCTCC	3 cut(s)	56, 218, 398
LpnPI	CCDG	9 cut(s)	125, 152, 201, 225, 243, 270, 284, 425, 491
Lsp1109I	GCAGC	5 cut(s)	97, 142, 239, 258, 419
LweI	GCATC	1 cut(s)	581
MaeII	ACGT	1 cut(s)	199
MaeIII	GTNAC	1 cut(s)	560
MalI	GATC	4 cut(s)	26, 295, 336, 355
MboI	GATC	4 cut(s)	24, 293, 334, 353
MboII	GAAGA	1 cut(s)	550
MfeI	CAATTG	1 cut(s)	130
MflI	RGATCY	2 cut(s)	24, 293
MhlI	GDGCHC	1 cut(s)	223
MlsI	TGGCCA	2 cut(s)	123, 448
MluCI	AATT	2 cut(s)	130, 633
MluNI	TGGCCA	2 cut(s)	123, 448
MnlI	CCTC	8 cut(s)	146, 281, 447, 475, 478, 511, 525, 622
Mox20I	TGGCCA	2 cut(s)	123, 448
Mph1103I	ATGCAT	1 cut(s)	18
MscI	TGGCCA	2 cut(s)	123, 448
MseI	TTAA	2 cut(s)	68, 512
MslI	CAYNNNNRTG	2 cut(s)	393, 588
Msp20I	TGGCCA	2 cut(s)	123, 448
MspA1I	CMGCKG	3 cut(s)	155, 271, 431
MspR9I	CCNGG	2 cut(s)	140, 258
MunI	CAATTG	1 cut(s)	130
Mva1269I	GAATGC	3 cut(s)	369, 583, 595
MvaI	CCWGG	2 cut(s)	140, 258
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	5 cut(s)	249, 261, 329, 338, 407
NdeII	GATC	4 cut(s)	24, 293, 334, 353
NlaIII	CATG	6 cut(s)	20, 128, 173, 186, 327, 398
NsiI	ATGCAT	1 cut(s)	18
PceI	AGGCCT	1 cut(s)	509
PctI	GAATGC	3 cut(s)	369, 583, 595
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	7 cut(s)	10, 112, 157, 254, 273, 283, 409
Ppu21I	YACGTR	1 cut(s)	200
PshBI	ATTAAT	1 cut(s)	68
Psp124BI	GAGCTC	1 cut(s)	223
Psp6I	CCWGG	2 cut(s)	138, 256
PspGI	CCWGG	2 cut(s)	138, 256
PsuI	RGATCY	2 cut(s)	24, 293
PvuII	CAGCTG	1 cut(s)	431
RsaI	GTAC	1 cut(s)	198
RsaNI	GTAC	1 cut(s)	197
RseI	CAYNNNNRTG	2 cut(s)	393, 588
SacI	GAGCTC	1 cut(s)	223
SaqAI	TTAA	2 cut(s)	68, 512
SatI	GCNGC	7 cut(s)	9, 111, 156, 253, 272, 282, 408
Sau3AI	GATC	4 cut(s)	24, 293, 334, 353
ScrFI	CCNGG	2 cut(s)	140, 258
SduI	GDGCHC	1 cut(s)	223
SfaNI	GCATC	1 cut(s)	581
SmiMI	CAYNNNNRTG	2 cut(s)	393, 588
SnaBI	TACGTA	1 cut(s)	200
Sse9I	AATT	2 cut(s)	130, 633
SseBI	AGGCCT	1 cut(s)	509
SsiI	CCGC	5 cut(s)	153, 243, 269, 281, 558
SstI	GAGCTC	1 cut(s)	223
StuI	AGGCCT	1 cut(s)	509
StyD4I	CCNGG	2 cut(s)	138, 256
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	1 cut(s)	75
TasI	AATT	2 cut(s)	130, 633
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	2 cut(s)	68, 512
Tru9I	TTAA	2 cut(s)	68, 512
TseI	GCWGC	6 cut(s)	8, 110, 155, 252, 271, 407
TspDTI	ATGAA	1 cut(s)	171
TspGWI	ACGGA	3 cut(s)	231, 411, 530
VspI	ATTAAT	1 cut(s)	68
XmiI	GTMKAC	1 cut(s)	307
Zsp2I	ATGCAT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.