Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000918

Physical Location & Seq

Genomic Coordinates Reverse (-)

16772963 .. 16773400

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGTCCATGAGAAGAAGCTGGTCTTGAAAGTATCCGATTGGCTTAGAGTCTATGACGACGGCTCTGTCGACCGGACATGGAGAGGACATCCTCAGATCAGTCACTTATTGGAGCCTGTTCCACCTCACCAGGAATATATTAACGGAGTTGCCACCAAAGACGTGGTTATTGACAACACGTCCGGCCATCGTGTCCGAATATATCTACAGGAGAGAAAGCCAGATGATAACAACGAGACTAAGCTACCCATAATCCTTCATTTCCATGGAGGGGGCTTTTGCTTTTGCGAAGCGGATTGGTACATGTACTACCATATCTACACCAAAATTGCACGTGCGGCCAACGCCATTGTTGTCTCCCCCTATCTAAGACAAGCTCCAGAGCACCGCCTCCCAGCTCAGATGGACGACGGCTTTTCTGTTCTCCTTTGGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

145

Amino Acids

16.88

Weight (kDa)

6.49

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_3	PF07859	85 - 145	1.9e-16	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000918)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g04030 FvH4_7g04040 FvH4_7g04070
malus_domestica	MD02G1275500.v1.1 MD02G1275600.v1.1 MD02G1275900.v1.1 MD02G1276300.v1.1 MD02G1276600.v1.1 MD07G1043400.v1.1
prunus_persica	Prupe.2G044700_v2.0.a1 Prupe.2G045000_v2.0.a1 Prupe.2G045300_v2.0.a1
pyrus_communis	pycom02g23560 pycom02g23580 pycom07g03080
rosa_chinensis	RchiOBHm_Chr1g0327821 RchiOBHm_Chr1g0327831 RchiOBHm_Chr1g0327841 RchiOBHm_Chr1g0327851 RchiOBHm_Chr1g0327881 RchiOBHm_Chr1g0327901
rosa_laevigata	RLG00000029959 RLG00000029962 RLG00000029966 RLG00000029967
rosa_multiflora	Rmu_co8316237.1_g000001 Rmu_sc0005527.1_g000004 Rmu_sc0005693.1_g000003 Rmu_sc0005693.1_g000016 Rmu_sc0005693.1_g000026
rosa_roxburghii	Rroxscaffold_4G00322160 Rroxscaffold_4G00322190 Rroxscaffold_4G00322210 Rroxscaffold_4G00322290 Rroxscaffold_4G00322300
rosa_rugosa	Rorug01G0071200 Rorug01G0071300 Rorug01G0071400 Rorug01G0071600 Rorug01G0072300 Rorug06G0427900 Rorug06G0427900
rosa_samantha	Rh1AG077600 Rh1AG087500 Rh1AG087600 Rh1AG087700 Rh1AG087900 Rh1AG088100 Rh1BG070600 Rh1BG070700 Rh1BG070900 Rh1CG085500 Rh1CG086200 Rh1CG086400 Rh1DG091900 Rh1DG092100 Rh1DG092200 Rh1DG092400 Rh1DG092600 Rh1DG092800 Rh7BG026600
rosa_wichuraiana	Rw1G006820 Rw1G006830 Rw1G006840 Rw1G006870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	65
AccI	GTMKAC	1 cut(s)	69
AciI	CCGC	3 cut(s)	293, 338, 388
AcoI	YGGCCR	2 cut(s)	184, 339
AcvI	CACGTG	1 cut(s)	335
AfaI	GTAC	2 cut(s)	302, 308
AfiI	CCNNNNNNNGG	1 cut(s)	271
AflIII	ACRYGT	2 cut(s)	177, 303
AgsI	TTSAA	1 cut(s)	28
AhdI	GACNNNNNGTC	1 cut(s)	178
AjiI	CACGTC	2 cut(s)	163, 180
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	4 cut(s)	19, 244, 377, 398
AluI	AGCT	4 cut(s)	19, 244, 377, 398
Alw21I	GWGCWC	1 cut(s)	387
Alw26I	GTCTC	2 cut(s)	230, 361
AoxI	GGCC	2 cut(s)	184, 339
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	4
BbrPI	CACGTG	1 cut(s)	335
Bbv12I	GWGCWC	1 cut(s)	387
BccI	CCATC	2 cut(s)	195, 397
BceAI	ACGGC	2 cut(s)	76, 427
BciT130I	CCWGG	1 cut(s)	131
BciVI	GTATCC	1 cut(s)	43
BcoDI	GTCTC	2 cut(s)	230, 361
BfmI	CTRYAG	1 cut(s)	206
BfuI	GTATCC	1 cut(s)	43
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
Bme1390I	CCNGG	1 cut(s)	131
Bme18I	GGWCC	1 cut(s)	4
BmeRI	GACNNNNNGTC	1 cut(s)	178
BmgBI	CACGTC	2 cut(s)	163, 180
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	1 cut(s)	131
BpmI	CTGGAG	1 cut(s)	363
BsaAI	YACGTR	1 cut(s)	335
BsaJI	CCNNGG	1 cut(s)	265
BsaWI	WCCGGW	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	265
BseGI	GGATG	1 cut(s)	88
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMII	CTCAG	2 cut(s)	107, 413
BseYI	CCCAGC	1 cut(s)	394
Bsh1285I	CGRYCG	1 cut(s)	73
BshFI	GGCC	2 cut(s)	186, 341
BsiEI	CGRYCG	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	387
BsiSI	CCGG	2 cut(s)	73, 183
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmAI	GTCTC	2 cut(s)	230, 361
BsnI	GGCC	2 cut(s)	186, 341
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp143I	GATC	1 cut(s)	96
Bsp19I	CCATGG	1 cut(s)	265
BspACI	CCGC	3 cut(s)	293, 338, 388
BspANI	GGCC	2 cut(s)	186, 341
BspCNI	CTCAG	2 cut(s)	106, 412
BspLI	GGNNCC	1 cut(s)	114
BssECI	CCNNGG	1 cut(s)	265
BssMI	GATC	1 cut(s)	96
BssT1I	CCWWGG	1 cut(s)	265
Bst2UI	CCWGG	1 cut(s)	131
BstBAI	YACGTR	1 cut(s)	335
BstDEI	CTNAG	5 cut(s)	44, 93, 240, 368, 399
BstDSI	CCRYGG	1 cut(s)	265
BstF5I	GGATG	1 cut(s)	88
BstKTI	GATC	1 cut(s)	99
BstMAI	GTCTC	2 cut(s)	230, 361
BstMBI	GATC	1 cut(s)	96
BstMCI	CGRYCG	1 cut(s)	73
BstMWI	GCNNNNNNNGC	2 cut(s)	338, 344
BstNI	CCWGG	1 cut(s)	131
BstNSI	RCATGY	1 cut(s)	307
BstSCI	CCNGG	1 cut(s)	129
BstSFI	CTRYAG	1 cut(s)	206
BstXI	CCANNNNNNTGG	1 cut(s)	163
BsuI	GTATCC	1 cut(s)	43
BsuRI	GGCC	2 cut(s)	186, 341
BtgI	CCRYGG	1 cut(s)	265
BtrI	CACGTC	2 cut(s)	163, 180
BtsCI	GGATG	1 cut(s)	88
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	2 cut(s)	301, 307
CviAII	CATG	4 cut(s)	8, 78, 266, 304
CviQI	GTAC	2 cut(s)	301, 307
DdeI	CTNAG	5 cut(s)	44, 93, 240, 368, 399
DpnI	GATC	1 cut(s)	98
DpnII	GATC	1 cut(s)	96
DrdI	GACNNNNNNGTC	1 cut(s)	65
DriI	GACNNNNNGTC	1 cut(s)	178
DseDI	GACNNNNNNGTC	1 cut(s)	65
EaeI	YGGCCR	2 cut(s)	184, 339
Eam1105I	GACNNNNNGTC	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	4
Eco72I	CACGTG	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	129
EcoT14I	CCWWGG	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	265
FaeI	CATG	4 cut(s)	11, 81, 269, 307
FaiI	YATR	9 cut(s)	9, 54, 79, 138, 202, 251, 267, 305, 315
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FatI	CATG	4 cut(s)	7, 77, 265, 303
FblI	GTMKAC	1 cut(s)	69
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	1 cut(s)	75
Fsp4HI	GCNGC	1 cut(s)	339
GluI	GCNGC	1 cut(s)	339
GsaI	CCCAGC	1 cut(s)	398
GsuI	CTGGAG	1 cut(s)	363
HaeIII	GGCC	2 cut(s)	186, 341
HapII	CCGG	2 cut(s)	73, 183
Hin1II	CATG	4 cut(s)	11, 81, 269, 307
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HinfI	GANTC	1 cut(s)	48
HpaII	CCGG	2 cut(s)	73, 183
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	5 cut(s)	37, 96, 197, 402, 437
Hpy188III	TCNNGA	2 cut(s)	25, 380
Hpy8I	GTNNAC	1 cut(s)	70
Hpy99I	CGWCG	2 cut(s)	62, 413
HpyAV	CCTTC	1 cut(s)	266
HpyCH4IV	ACGT	3 cut(s)	162, 179, 334
HpyCH4V	TGCA	1 cut(s)	332
HpyF10VI	GCNNNNNNNGC	2 cut(s)	338, 344
HpyF3I	CTNAG	5 cut(s)	44, 93, 240, 368, 399
HpySE526I	ACGT	3 cut(s)	162, 179, 334
Hsp92II	CATG	4 cut(s)	11, 81, 269, 307
Kzo9I	GATC	1 cut(s)	96
LmnI	GCTCC	2 cut(s)	112, 382
MaeII	ACGT	3 cut(s)	162, 179, 334
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	1 cut(s)	98
MboI	GATC	1 cut(s)	96
MboII	GAAGA	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	387
MluCI	AATT	1 cut(s)	327
MlyI	GAGTC	1 cut(s)	57
MnlI	CCTC	5 cut(s)	77, 102, 135, 263, 401
MseI	TTAA	1 cut(s)	141
MslI	CAYNNNNRTG	1 cut(s)	264
MspI	CCGG	2 cut(s)	73, 183
MspR9I	CCNGG	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	2 cut(s)	338, 344
NcoI	CCATGG	1 cut(s)	265
NdeII	GATC	1 cut(s)	96
NlaIII	CATG	4 cut(s)	11, 81, 269, 307
NlaIV	GGNNCC	1 cut(s)	114
NmuCI	GTSAC	1 cut(s)	101
NspI	RCATGY	1 cut(s)	307
PciI	ACATGT	1 cut(s)	303
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PkrI	GCNGC	1 cut(s)	340
PleI	GAGTC	1 cut(s)	56
PmaCI	CACGTG	1 cut(s)	335
PmlI	CACGTG	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	56
Ppu21I	YACGTR	1 cut(s)	335
PscI	ACATGT	1 cut(s)	303
Psp6I	CCWGG	1 cut(s)	129
PspCI	CACGTG	1 cut(s)	335
PspFI	CCCAGC	1 cut(s)	394
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	2 cut(s)	302, 308
RsaNI	GTAC	2 cut(s)	301, 307
RseI	CAYNNNNRTG	1 cut(s)	264
SalI	GTCGAC	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	1 cut(s)	96
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	57
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	387
SetI	ASST	8 cut(s)	21, 127, 165, 182, 246, 337, 379, 400
SfcI	CTRYAG	1 cut(s)	206
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	264
Sse9I	AATT	1 cut(s)	327
SsiI	CCGC	3 cut(s)	293, 338, 388
StyD4I	CCNGG	1 cut(s)	129
StyI	CCWWGG	1 cut(s)	265
TaiI	ACGT	3 cut(s)	165, 182, 337
TaqI	TCGA	1 cut(s)	69
TasI	AATT	1 cut(s)	327
TatI	WGTACW	1 cut(s)	306
TauI	GCSGC	1 cut(s)	341
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TseFI	GTSAC	1 cut(s)	101
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	1 cut(s)	248
TspGWI	ACGGA	1 cut(s)	159
VpaK11BI	GGWCC	1 cut(s)	4
XceI	RCATGY	1 cut(s)	307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	160
XmiI	GTMKAC	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.