RchiOBHm_Chr1g0355101

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001886
Physical Location & Seq
Forward (+)
47856054 .. 47858309
2256 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 408 bp
ATGGCGGCCGCGGGATCCGAACCCGGATCCGACGCCGACGAGCTGGGCGAGCTGGAGTGCCAAGTTACCGAAATGGCGGTGAAGATTCAAGAGTACCGAGCCACTGTACCGGAGCAGCTCAAGAACGCGCTGACTTCCATTATCGAAGCTCAGAGACCCGTTTTGGCTGATGGGTCGGAGCCTGGGACGTCCGGGGATCCAAATTCAGGACAGATTACTTCTGATAAGGATGTGTTAGGGGATCAGATGTTTCAGAAGATAAATTTGCTTAGAGACAAAATCTCTCGTAATGTTGCTGCTTTGCCGATTGTCTTGAAGAGGTTGAAGGAGTGTATGTCTAATATTGACAAACTGGATTCTCAAAACACATTCATACATCCTGCATTTAAACGGAAAAGGACTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.74

Weight (kDa)

5.21

Isoelectric Point (pI)

50.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 191
AccII CGCG 2 cut(s) 11, 128
AciI CCGC 4 cut(s) 5, 9, 11, 77
AclWI GGATC 7 cut(s) 9, 21, 22, 34, 191, 204, 249
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 2 cut(s) 202, 262
AcyI GRCGYC 2 cut(s) 33, 188
AfaI GTAC 2 cut(s) 95, 108
AfiI CCNNNNNNNGG 1 cut(s) 206
AgsI TTSAA 3 cut(s) 89, 316, 325
AjnI CCWGG 1 cut(s) 181
AluBI AGCT 5 cut(s) 43, 52, 118, 149, 405
AluI AGCT 5 cut(s) 43, 52, 118, 149, 405
Alw26I GTCTC 2 cut(s) 148, 267
AlwI GGATC 7 cut(s) 9, 21, 22, 34, 191, 204, 249
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 2 cut(s) 115, 296
ApoI RAATTY 2 cut(s) 202, 262
AspLEI GCGC 1 cut(s) 130
AsuC2I CCSGG 2 cut(s) 24, 193
AsuHPI GGTGA 1 cut(s) 91
BamHI GGATCC 3 cut(s) 14, 26, 196
BbvI GCAGC 2 cut(s) 127, 283
BccI CCATC 1 cut(s) 164
BciT130I CCWGG 1 cut(s) 183
BcnI CCSGG 2 cut(s) 24, 193
BcoDI GTCTC 2 cut(s) 148, 267
BfaI CTAG 2 cut(s) 402, 406
BisI GCNGC 4 cut(s) 6, 9, 116, 297
BlsI GCNGC 4 cut(s) 7, 10, 117, 298
Bme1390I CCNGG 3 cut(s) 24, 183, 193
BmiI GGNNCC 4 cut(s) 16, 28, 180, 198
BmrFI CCNGG 3 cut(s) 24, 183, 193
BpmI CTGGAG 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 104
BpuMI CCSGG 2 cut(s) 24, 193
BsaHI GRCGYC 2 cut(s) 33, 188
BsaI GGTCTC 1 cut(s) 148
BsaJI CCNNGG 3 cut(s) 9, 182, 192
BsaWI WCCGGW 1 cut(s) 109
BsaXI ACNNNNNCTCC 2 cut(s) 320, 350
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 357
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 3 cut(s) 9, 182, 192
BseGI GGATG 2 cut(s) 235, 376
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMII CTCAG 1 cut(s) 164
BseNI ACTGG 1 cut(s) 357
BseX3I CGGCCG 1 cut(s) 6
BseXI GCAGC 2 cut(s) 127, 283
BseYI CCCAGC 1 cut(s) 43
Bsh1236I CGCG 2 cut(s) 11, 128
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 1 cut(s) 8
BsiEI CGRYCG 1 cut(s) 9
BsiSI CCGG 3 cut(s) 24, 110, 192
BslFI GGGAC 1 cut(s) 199
BslI CCNNNNNNNGG 1 cut(s) 206
BsmAI GTCTC 2 cut(s) 148, 267
BsmFI GGGAC 1 cut(s) 199
BsnI GGCC 1 cut(s) 8
Bso31I GGTCTC 1 cut(s) 148
Bsp143I GATC 4 cut(s) 14, 26, 196, 241
BspACI CCGC 4 cut(s) 5, 9, 11, 77
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 1 cut(s) 163
BspFNI CGCG 2 cut(s) 11, 128
BspLI GGNNCC 4 cut(s) 16, 28, 180, 198
BspPI GGATC 7 cut(s) 9, 21, 22, 34, 191, 204, 249
BspTNI GGTCTC 1 cut(s) 148
BsrI ACTGG 1 cut(s) 357
BssECI CCNNGG 3 cut(s) 9, 182, 192
BssMI GATC 4 cut(s) 14, 26, 196, 241
BssNI GRCGYC 2 cut(s) 33, 188
Bst2UI CCWGG 1 cut(s) 183
Bst4CI ACNGT 1 cut(s) 106
Bst6I CTCTTC 1 cut(s) 311
BstACI GRCGYC 2 cut(s) 33, 188
BstC8I GCNNGC 1 cut(s) 50
BstDEI CTNAG 2 cut(s) 150, 269
BstDSI CCRYGG 1 cut(s) 9
BstF5I GGATG 2 cut(s) 235, 376
BstFNI CGCG 2 cut(s) 11, 128
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 4 cut(s) 17, 29, 199, 244
BstMAI GTCTC 2 cut(s) 148, 267
BstMBI GATC 4 cut(s) 14, 26, 196, 241
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 49
BstNI CCWGG 1 cut(s) 183
BstSCI CCNGG 3 cut(s) 22, 181, 191
BstUI CGCG 2 cut(s) 11, 128
BstV1I GCAGC 2 cut(s) 127, 283
BstX2I RGATCY 3 cut(s) 14, 26, 196
BstYI RGATCY 3 cut(s) 14, 26, 196
BstZI CGGCCG 1 cut(s) 6
BsuRI GGCC 1 cut(s) 8
BtgI CCRYGG 1 cut(s) 9
BtsCI GGATG 2 cut(s) 235, 376
BtsIMutI CAGTG 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 50
CciNI GCGGCCGC 1 cut(s) 6
CfoI GCGC 1 cut(s) 130
Cfr42I CCGCGG 1 cut(s) 12
CseI GACGC 1 cut(s) 41
Csp6I GTAC 2 cut(s) 94, 107
CviJI RGCY 9 cut(s) 8, 43, 52, 101, 118, 149, 167, 181, 405
CviKI_1 RGCY 9 cut(s) 8, 43, 52, 101, 118, 149, 167, 181, 405
CviQI GTAC 2 cut(s) 94, 107
DdeI CTNAG 2 cut(s) 150, 269
DpnI GATC 4 cut(s) 16, 28, 198, 243
DpnII GATC 4 cut(s) 14, 26, 196, 241
DraI TTTAAA 1 cut(s) 388
EaeI YGGCCR 1 cut(s) 6
EagI CGGCCG 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
EclXI CGGCCG 1 cut(s) 6
Eco31I GGTCTC 1 cut(s) 148
Eco52I CGGCCG 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 181
FaiI YATR 2 cut(s) 335, 374
FaqI GGGAC 1 cut(s) 199
FauI CCCGC 1 cut(s) 4
Fnu4HI GCNGC 4 cut(s) 6, 9, 116, 297
FokI GGATG 2 cut(s) 242, 363
Fsp4HI GCNGC 4 cut(s) 6, 9, 116, 297
FspBI CTAG 2 cut(s) 402, 406
GlaI GCGC 1 cut(s) 129
GluI GCNGC 4 cut(s) 6, 9, 116, 297
GsaI CCCAGC 1 cut(s) 47
GsuI CTGGAG 1 cut(s) 74
HaeIII GGCC 1 cut(s) 8
HapII CCGG 3 cut(s) 24, 110, 192
HgaI GACGC 1 cut(s) 41
HhaI GCGC 1 cut(s) 130
Hin1I GRCGYC 2 cut(s) 33, 188
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HinfI GANTC 2 cut(s) 85, 356
HpaII CCGG 3 cut(s) 24, 110, 192
HphI GGTGA 1 cut(s) 91
Hpy188I TCNGA 7 cut(s) 19, 31, 153, 178, 223, 246, 255
Hpy188III TCNNGA 4 cut(s) 89, 121, 207, 313
Hpy99I CGWCG 2 cut(s) 35, 41
HpyAV CCTTC 1 cut(s) 319
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4IV ACGT 1 cut(s) 188
HpyCH4V TGCA 1 cut(s) 383
HpyF10VI GCNNNNNNNGC 1 cut(s) 49
HpyF3I CTNAG 2 cut(s) 150, 269
HpySE526I ACGT 1 cut(s) 188
Hsp92I GRCGYC 2 cut(s) 33, 188
HspAI GCGC 1 cut(s) 128
KspI CCGCGG 1 cut(s) 12
Kzo9I GATC 4 cut(s) 14, 26, 196, 241
LmnI GCTCC 2 cut(s) 112, 178
Lsp1109I GCAGC 2 cut(s) 127, 283
MaeI CTAG 2 cut(s) 402, 406
MaeII ACGT 1 cut(s) 188
MaeIII GTNAC 1 cut(s) 64
MalI GATC 4 cut(s) 16, 28, 198, 243
MboI GATC 4 cut(s) 14, 26, 196, 241
MboII GAAGA 3 cut(s) 94, 268, 328
MflI RGATCY 3 cut(s) 14, 26, 196
MluCI AATT 2 cut(s) 202, 262
MmeI TCCRAC 2 cut(s) 54, 156
MnlI CCTC 1 cut(s) 312
MseI TTAA 1 cut(s) 387
MspA1I CMGCKG 1 cut(s) 11
MspI CCGG 3 cut(s) 24, 110, 192
MspR9I CCNGG 3 cut(s) 24, 183, 193
MvaI CCWGG 1 cut(s) 183
MvnI CGCG 2 cut(s) 11, 128
MwoI GCNNNNNNNGC 1 cut(s) 49
NciI CCSGG 2 cut(s) 24, 193
NdeII GATC 4 cut(s) 14, 26, 196, 241
NlaIV GGNNCC 4 cut(s) 16, 28, 180, 198
NotI GCGGCCGC 1 cut(s) 6
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PfeI GAWTC 2 cut(s) 85, 356
PkrI GCNGC 4 cut(s) 7, 10, 117, 298
Psp6I CCWGG 1 cut(s) 181
PspFI CCCAGC 1 cut(s) 43
PspGI CCWGG 1 cut(s) 181
PspN4I GGNNCC 4 cut(s) 16, 28, 180, 198
PsuI RGATCY 3 cut(s) 14, 26, 196
RsaI GTAC 2 cut(s) 95, 108
RsaNI GTAC 2 cut(s) 94, 107
SacII CCGCGG 1 cut(s) 12
SaqAI TTAA 1 cut(s) 387
SatI GCNGC 4 cut(s) 6, 9, 116, 297
Sau3AI GATC 4 cut(s) 14, 26, 196, 241
ScrFI CCNGG 3 cut(s) 24, 183, 193
SetI ASST 7 cut(s) 45, 54, 120, 151, 191, 323, 407
Sfr303I CCGCGG 1 cut(s) 12
SgrBI CCGCGG 1 cut(s) 12
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 2 cut(s) 202, 262
SsiI CCGC 4 cut(s) 5, 9, 11, 77
SspI AATATT 1 cut(s) 343
SspMI CTAG 2 cut(s) 402, 406
StyD4I CCNGG 3 cut(s) 22, 181, 191
TaaI ACNGT 1 cut(s) 106
TaiI ACGT 1 cut(s) 191
TaqI TCGA 1 cut(s) 144
TasI AATT 2 cut(s) 202, 262
TauI GCSGC 2 cut(s) 8, 11
TfiI GAWTC 2 cut(s) 85, 356
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TscAI CASTG 1 cut(s) 109
TseI GCWGC 2 cut(s) 115, 296
TspDTI ATGAA 1 cut(s) 361
TspGWI ACGGA 1 cut(s) 406
TspRI CASTG 1 cut(s) 109
XapI RAATTY 2 cut(s) 202, 262
XspI CTAG 2 cut(s) 402, 406
ZraI GACGTC 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.