RchiOBHm_Chr4g0403301

Protein TRANSPORT INHIBITOR RESPONSE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001768
Physical Location & Seq
Reverse (-)
22381827 .. 22383075
1249 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37506

Sequence Viewer

Length: 327 bp
ATGATCTTTGACGAGATCTTGGAGCTGATTGCCAAGTCTTTCAAGAATTTCAAGCTCCTTGTGCTTTCGTCCTGTGAGGGATTCAGTACCGATGGCCTTGCCTCCATTGCGGCTAATTGCAGGTTCATCTCTCTGCTGCTATGGTTATCTATCAGGATTGGCAAAACCCTCAAAATCAACCTCAATGAGTTCCCTGGTGCCTACAGAGCTGACTCTACTGCAATTCCCGAGACTCTCACTTACCAGAGAAAGCATCAAAATATGGTGAAGGCCAAAAGGAACATGGAGCATGATACAGATCCTGGGAAGGATATTATGGGATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0000822 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0008144 GO:0008150 GO:0008152 GO:0009267 GO:0009555 GO:0009605 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0009991 GO:0010011 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010152 GO:0010311 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016036 GO:0016567 GO:0016740 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031461 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0032446 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033554 GO:0036094 GO:0036211 GO:0038023 GO:0038198 GO:0042221 GO:0042562 GO:0042594 GO:0043167 GO:0043168 GO:0043170 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045013 GO:0045014 GO:0045892 GO:0045934 GO:0045990 GO:0046015 GO:0048229 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060089 GO:0060255 GO:0061458 GO:0061984 GO:0061985 GO:0061986 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1990234 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

108

Amino Acids

12.18

Weight (kDa)

8.62

Isoelectric Point (pI)

17.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 111
AccB1I GGYRCC 1 cut(s) 197
AciI CCGC 1 cut(s) 110
AclWI GGATC 1 cut(s) 293
AcsI RAATTY 1 cut(s) 46
AfaI GTAC 1 cut(s) 88
AgsI TTSAA 2 cut(s) 43, 52
AjnI CCWGG 2 cut(s) 193, 301
AluBI AGCT 3 cut(s) 25, 55, 209
AluI AGCT 3 cut(s) 25, 55, 209
Alw26I GTCTC 1 cut(s) 224
AlwI GGATC 1 cut(s) 293
AlwNI CAGNNNCTG 1 cut(s) 302
Ama87I CYCGRG 1 cut(s) 227
AoxI GGCC 2 cut(s) 94, 270
ApeKI GCWGC 1 cut(s) 136
ApoI RAATTY 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 277
AvaI CYCGRG 1 cut(s) 227
BanI GGYRCC 1 cut(s) 197
BbvI GCAGC 1 cut(s) 123
BccI CCATC 1 cut(s) 86
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BciT130I CCWGG 2 cut(s) 195, 303
BcoDI GTCTC 1 cut(s) 224
BfmI CTRYAG 1 cut(s) 202
BfuAI ACCTGC 1 cut(s) 111
BglII AGATCT 1 cut(s) 15
BisI GCNGC 2 cut(s) 111, 137
BlsI GCNGC 2 cut(s) 112, 138
Bme1390I CCNGG 2 cut(s) 195, 303
BmeT110I CYCGRG 1 cut(s) 227
BmiI GGNNCC 1 cut(s) 199
BmrFI CCNGG 2 cut(s) 195, 303
BmsI GCATC 1 cut(s) 262
BsaBI GATNNNNATC 1 cut(s) 297
BsaJI CCNNGG 2 cut(s) 193, 302
Bse3DI GCAATG 1 cut(s) 105
Bse8I GATNNNNATC 1 cut(s) 297
BseBI CCWGG 2 cut(s) 195, 303
BseDI CCNNGG 2 cut(s) 193, 302
BseJI GATNNNNATC 1 cut(s) 297
BseMI GCAATG 1 cut(s) 105
BseXI GCAGC 1 cut(s) 123
BshFI GGCC 2 cut(s) 96, 272
BshNI GGYRCC 1 cut(s) 197
BsiHKCI CYCGRG 1 cut(s) 227
BsmAI GTCTC 1 cut(s) 224
BsnI GGCC 2 cut(s) 96, 272
BsoBI CYCGRG 1 cut(s) 227
Bsp143I GATC 3 cut(s) 3, 15, 298
BspACI CCGC 1 cut(s) 110
BspANI GGCC 2 cut(s) 96, 272
BspLI GGNNCC 1 cut(s) 199
BspMI ACCTGC 1 cut(s) 111
BspPI GGATC 1 cut(s) 293
BspT107I GGYRCC 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 105
BssECI CCNNGG 2 cut(s) 193, 302
BssMI GATC 3 cut(s) 3, 15, 298
Bst2UI CCWGG 2 cut(s) 195, 303
BstKTI GATC 3 cut(s) 6, 18, 301
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 3 cut(s) 3, 15, 298
BstMWI GCNNNNNNNGC 3 cut(s) 61, 107, 206
BstNI CCWGG 2 cut(s) 195, 303
BstSCI CCNGG 2 cut(s) 193, 301
BstSFI CTRYAG 1 cut(s) 202
BstV1I GCAGC 1 cut(s) 123
BstX2I RGATCY 2 cut(s) 15, 298
BstYI RGATCY 2 cut(s) 15, 298
BsuRI GGCC 2 cut(s) 96, 272
BveI ACCTGC 1 cut(s) 111
CaiI CAGNNNCTG 1 cut(s) 302
Csp6I GTAC 1 cut(s) 87
CviAII CATG 2 cut(s) 283, 290
CviJI RGCY 6 cut(s) 25, 55, 96, 113, 209, 272
CviKI_1 RGCY 6 cut(s) 25, 55, 96, 113, 209, 272
CviQI GTAC 1 cut(s) 87
DpnI GATC 3 cut(s) 5, 17, 300
DpnII GATC 3 cut(s) 3, 15, 298
Eco88I CYCGRG 1 cut(s) 227
EcoRII CCWGG 2 cut(s) 193, 301
FaeI CATG 2 cut(s) 286, 293
FaiI YATR 6 cut(s) 142, 263, 284, 291, 317, 325
FatI CATG 2 cut(s) 282, 289
Fnu4HI GCNGC 2 cut(s) 111, 137
Fsp4HI GCNGC 2 cut(s) 111, 137
GluI GCNGC 2 cut(s) 111, 137
HaeIII GGCC 2 cut(s) 96, 272
Hin1II CATG 2 cut(s) 286, 293
HinfI GANTC 3 cut(s) 81, 212, 232
HphI GGTGA 1 cut(s) 277
Hpy188III TCNNGA 3 cut(s) 43, 154, 227
HpyAV CCTTC 2 cut(s) 262, 301
HpyCH4V TGCA 2 cut(s) 120, 221
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 107, 206
Hsp92II CATG 2 cut(s) 286, 293
Kzo9I GATC 3 cut(s) 3, 15, 298
LmnI GCTCC 3 cut(s) 22, 60, 286
LpnPI CCDG 8 cut(s) 85, 106, 139, 180, 207, 257, 288, 315
Lsp1109I GCAGC 1 cut(s) 123
LweI GCATC 1 cut(s) 262
MalI GATC 3 cut(s) 5, 17, 300
MboI GATC 3 cut(s) 3, 15, 298
MflI RGATCY 2 cut(s) 15, 298
MluCI AATT 3 cut(s) 46, 115, 222
MlyI GAGTC 2 cut(s) 206, 226
MnlI CCTC 4 cut(s) 70, 112, 179, 191
MspR9I CCNGG 2 cut(s) 195, 303
MvaI CCWGG 2 cut(s) 195, 303
MwoI GCNNNNNNNGC 3 cut(s) 61, 107, 206
NdeII GATC 3 cut(s) 3, 15, 298
NlaIII CATG 2 cut(s) 286, 293
NlaIV GGNNCC 1 cut(s) 199
PfeI GAWTC 1 cut(s) 81
PkrI GCNGC 2 cut(s) 112, 138
PleI GAGTC 2 cut(s) 206, 226
PpsI GAGTC 2 cut(s) 206, 226
Psp6I CCWGG 2 cut(s) 193, 301
PspGI CCWGG 2 cut(s) 193, 301
PspN4I GGNNCC 1 cut(s) 199
PstNI CAGNNNCTG 1 cut(s) 302
PsuI RGATCY 2 cut(s) 15, 298
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
SatI GCNGC 2 cut(s) 111, 137
Sau3AI GATC 3 cut(s) 3, 15, 298
SchI GAGTC 2 cut(s) 206, 226
ScrFI CCNGG 2 cut(s) 195, 303
SetI ASST 5 cut(s) 27, 57, 125, 183, 211
SfaNI GCATC 1 cut(s) 262
SfcI CTRYAG 1 cut(s) 202
Sse9I AATT 3 cut(s) 46, 115, 222
SsiI CCGC 1 cut(s) 110
StyD4I CCNGG 2 cut(s) 193, 301
TasI AATT 3 cut(s) 46, 115, 222
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 1 cut(s) 81
TseI GCWGC 1 cut(s) 136
TspDTI ATGAA 1 cut(s) 115
XapI RAATTY 1 cut(s) 46
XcmI CCANNNNNNNNNTGG 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.