RchiOBHm_Chr5g0002501

Protein TRANSPORT INHIBITOR RESPONSE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001768
Physical Location & Seq
Reverse (-)
1447160 .. 1447409
250 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28387

Sequence Viewer

Length: 174 bp
ATGATCTCTGATGAGAGCTTGGAACTGATTGCCAAGTATTTCAAGAATTTCAATCTCCTTGTGCTTTCGTCCTGTGAGGGATTCGGTACCGATGGCCTTGCCTTCATTGCGGCTAATTGCAGGTTCATCTCTCTGCCAGTATGGATATCTATTGCACTGTCTGGTTTGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0000822 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0008144 GO:0008150 GO:0008152 GO:0009267 GO:0009555 GO:0009605 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0009991 GO:0010011 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010152 GO:0010311 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016036 GO:0016567 GO:0016740 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031461 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0032446 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033554 GO:0036094 GO:0036211 GO:0038023 GO:0038198 GO:0042221 GO:0042562 GO:0042594 GO:0043167 GO:0043168 GO:0043170 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045013 GO:0045014 GO:0045892 GO:0045934 GO:0045990 GO:0046015 GO:0048229 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060089 GO:0060255 GO:0061458 GO:0061984 GO:0061985 GO:0061986 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1990234 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

57

Amino Acids

6.2

Weight (kDa)

4.51

Isoelectric Point (pI)

21.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 111
Acc65I GGTACC 1 cut(s) 86
AccB1I GGYRCC 1 cut(s) 86
AciI CCGC 1 cut(s) 110
AcsI RAATTY 1 cut(s) 46
AfaI GTAC 1 cut(s) 88
AgsI TTSAA 2 cut(s) 43, 52
AluBI AGCT 1 cut(s) 18
AluI AGCT 1 cut(s) 18
AoxI GGCC 1 cut(s) 94
ApoI RAATTY 1 cut(s) 46
Asp718I GGTACC 1 cut(s) 86
BanI GGYRCC 1 cut(s) 86
BccI CCATC 1 cut(s) 86
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BfuAI ACCTGC 1 cut(s) 111
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 137
Bse3DI GCAATG 1 cut(s) 105
BseMI GCAATG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 137
BshFI GGCC 1 cut(s) 96
BshNI GGYRCC 1 cut(s) 86
BsnI GGCC 1 cut(s) 96
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 1 cut(s) 110
BspANI GGCC 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 88
BspMI ACCTGC 1 cut(s) 111
BspT107I GGYRCC 1 cut(s) 86
BsrDI GCAATG 1 cut(s) 105
BsrI ACTGG 1 cut(s) 137
BssMI GATC 1 cut(s) 3
Bst4CI ACNGT 1 cut(s) 159
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 107
BsuRI GGCC 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 155
BveI ACCTGC 1 cut(s) 111
Csp6I GTAC 1 cut(s) 87
CviJI RGCY 3 cut(s) 18, 96, 113
CviKI_1 RGCY 3 cut(s) 18, 96, 113
CviQI GTAC 1 cut(s) 87
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eco32I GATATC 1 cut(s) 147
EcoRV GATATC 1 cut(s) 147
FaiI YATR 1 cut(s) 142
Fnu4HI GCNGC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 111
GluI GCNGC 1 cut(s) 111
HaeIII GGCC 1 cut(s) 96
HinfI GANTC 1 cut(s) 81
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 1 cut(s) 43
HpyAV CCTTC 1 cut(s) 112
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4V TGCA 2 cut(s) 120, 155
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
KpnI GGTACC 1 cut(s) 90
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 4 cut(s) 85, 106, 147, 150
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MluCI AATT 2 cut(s) 46, 115
MnlI CCTC 1 cut(s) 70
MwoI GCNNNNNNNGC 1 cut(s) 107
NdeII GATC 1 cut(s) 3
NlaIV GGNNCC 1 cut(s) 88
PfeI GAWTC 1 cut(s) 81
PkrI GCNGC 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 88
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 1 cut(s) 3
SetI ASST 2 cut(s) 20, 125
SgeI CNNG 8 cut(s) 31, 46, 55, 71, 84, 110, 133, 149
Sse9I AATT 2 cut(s) 46, 115
SsiI CCGC 1 cut(s) 110
TaaI ACNGT 1 cut(s) 159
TasI AATT 2 cut(s) 46, 115
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 1 cut(s) 81
TscAI CASTG 1 cut(s) 162
TspDTI ATGAA 2 cut(s) 94, 115
TspRI CASTG 1 cut(s) 162
XapI RAATTY 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.