The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Prefoldin_2 | PF01920 | 13 - 117 | 2.2e-26 | Prefoldin subunit |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 172 |
| AclWI | GGATC | 1 cut(s) | 331 |
| AcsI | RAATTY | 2 cut(s) | 84, 309 |
| AcuI | CTGAAG | 2 cut(s) | 39, 163 |
| AfaI | GTAC | 2 cut(s) | 198, 332 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 425 |
| AgsI | TTSAA | 1 cut(s) | 280 |
| AjiI | CACGTC | 1 cut(s) | 118 |
| AjnI | CCWGG | 2 cut(s) | 167, 408 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 272, 304 |
| AluBI | AGCT | 3 cut(s) | 17, 41, 106 |
| AluI | AGCT | 3 cut(s) | 17, 41, 106 |
| Alw21I | GWGCWC | 2 cut(s) | 129, 382 |
| AlwI | GGATC | 1 cut(s) | 331 |
| AoxI | GGCC | 1 cut(s) | 415 |
| ApeKI | GCWGC | 2 cut(s) | 59, 238 |
| ApoI | RAATTY | 2 cut(s) | 84, 309 |
| AspS9I | GGNCC | 2 cut(s) | 223, 416 |
| AsuHPI | GGTGA | 1 cut(s) | 148 |
| AvaII | GGWCC | 1 cut(s) | 223 |
| Bbv12I | GWGCWC | 2 cut(s) | 129, 382 |
| BbvI | GCAGC | 2 cut(s) | 46, 250 |
| BccI | CCATC | 5 cut(s) | 106, 155, 172, 221, 365 |
| BciT130I | CCWGG | 2 cut(s) | 169, 410 |
| BclI | TGATCA | 1 cut(s) | 138 |
| BfaI | CTAG | 2 cut(s) | 6, 107 |
| BisI | GCNGC | 2 cut(s) | 60, 239 |
| BlsI | GCNGC | 2 cut(s) | 61, 240 |
| Bme1390I | CCNGG | 2 cut(s) | 169, 410 |
| Bme18I | GGWCC | 1 cut(s) | 223 |
| BmgBI | CACGTC | 1 cut(s) | 118 |
| BmgT120I | GGNCC | 2 cut(s) | 223, 416 |
| BmrFI | CCNGG | 2 cut(s) | 169, 410 |
| BpuEI | CTTGAG | 1 cut(s) | 384 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 396, 426 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 425 |
| Bse1I | ACTGG | 1 cut(s) | 204 |
| BseBI | CCWGG | 2 cut(s) | 169, 410 |
| BseGI | GGATG | 3 cut(s) | 147, 164, 376 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 425 |
| BseMII | CTCAG | 1 cut(s) | 93 |
| BseNI | ACTGG | 1 cut(s) | 204 |
| BseRI | GAGGAG | 2 cut(s) | 275, 377 |
| BseXI | GCAGC | 2 cut(s) | 46, 250 |
| BsgI | GTGCAG | 1 cut(s) | 257 |
| BshFI | GGCC | 1 cut(s) | 417 |
| BsiHKAI | GWGCWC | 2 cut(s) | 129, 382 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 425 |
| BsnI | GGCC | 1 cut(s) | 417 |
| Bsp1286I | GDGCHC | 2 cut(s) | 129, 382 |
| Bsp143I | GATC | 2 cut(s) | 138, 336 |
| BspACI | CCGC | 1 cut(s) | 172 |
| BspANI | GGCC | 1 cut(s) | 417 |
| BspCNI | CTCAG | 1 cut(s) | 94 |
| BspPI | GGATC | 1 cut(s) | 331 |
| BsrI | ACTGG | 1 cut(s) | 204 |
| BssMI | GATC | 2 cut(s) | 138, 336 |
| Bst2UI | CCWGG | 2 cut(s) | 169, 410 |
| BstC8I | GCNNGC | 4 cut(s) | 39, 125, 231, 382 |
| BstDEI | CTNAG | 2 cut(s) | 102, 327 |
| BstF5I | GGATG | 3 cut(s) | 147, 164, 376 |
| BstKTI | GATC | 2 cut(s) | 141, 339 |
| BstMBI | GATC | 2 cut(s) | 138, 336 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 235 |
| BstNI | CCWGG | 2 cut(s) | 169, 410 |
| BstSCI | CCNGG | 2 cut(s) | 167, 408 |
| BstV1I | GCAGC | 2 cut(s) | 46, 250 |
| BstX2I | RGATCY | 1 cut(s) | 336 |
| BstYI | RGATCY | 1 cut(s) | 336 |
| BsuRI | GGCC | 1 cut(s) | 417 |
| BtrI | CACGTC | 1 cut(s) | 118 |
| BtsCI | GGATG | 3 cut(s) | 147, 164, 376 |
| BtsIMutI | CAGTG | 1 cut(s) | 99 |
| Cac8I | GCNNGC | 4 cut(s) | 39, 125, 231, 382 |
| Cfr13I | GGNCC | 2 cut(s) | 223, 416 |
| Csp6I | GTAC | 2 cut(s) | 197, 331 |
| CviAII | CATG | 1 cut(s) | 64 |
| CviJI | RGCY | 7 cut(s) | 17, 41, 106, 154, 287, 326, 417 |
| CviKI_1 | RGCY | 7 cut(s) | 17, 41, 106, 154, 287, 326, 417 |
| CviQI | GTAC | 2 cut(s) | 197, 331 |
| DdeI | CTNAG | 2 cut(s) | 102, 327 |
| DpnI | GATC | 2 cut(s) | 140, 338 |
| DpnII | GATC | 2 cut(s) | 138, 336 |
| Eco47I | GGWCC | 1 cut(s) | 223 |
| Eco57I | CTGAAG | 2 cut(s) | 39, 163 |
| EcoO109I | RGGNCCY | 1 cut(s) | 223 |
| EcoRII | CCWGG | 2 cut(s) | 167, 408 |
| FaeI | CATG | 1 cut(s) | 67 |
| FaiI | YATR | 1 cut(s) | 65 |
| FatI | CATG | 1 cut(s) | 63 |
| FbaI | TGATCA | 1 cut(s) | 138 |
| Fnu4HI | GCNGC | 2 cut(s) | 60, 239 |
| FokI | GGATG | 3 cut(s) | 134, 151, 383 |
| Fsp4HI | GCNGC | 2 cut(s) | 60, 239 |
| FspBI | CTAG | 2 cut(s) | 6, 107 |
| GluI | GCNGC | 2 cut(s) | 60, 239 |
| HaeIII | GGCC | 1 cut(s) | 417 |
| Hin1II | CATG | 1 cut(s) | 67 |
| HinfI | GANTC | 1 cut(s) | 405 |
| HphI | GGTGA | 1 cut(s) | 148 |
| Hpy166II | GTNNAC | 1 cut(s) | 197 |
| Hpy188I | TCNGA | 3 cut(s) | 73, 182, 316 |
| Hpy188III | TCNNGA | 1 cut(s) | 340 |
| Hpy8I | GTNNAC | 1 cut(s) | 197 |
| HpyAV | CCTTC | 3 cut(s) | 245, 361, 383 |
| HpyCH4IV | ACGT | 1 cut(s) | 117 |
| HpyCH4V | TGCA | 2 cut(s) | 47, 238 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 235 |
| HpyF3I | CTNAG | 2 cut(s) | 102, 327 |
| HpySE526I | ACGT | 1 cut(s) | 117 |
| Hsp92II | CATG | 1 cut(s) | 67 |
| Ksp22I | TGATCA | 1 cut(s) | 138 |
| Kzo9I | GATC | 2 cut(s) | 138, 336 |
| Lsp1109I | GCAGC | 2 cut(s) | 46, 250 |
| MaeI | CTAG | 2 cut(s) | 6, 107 |
| MaeII | ACGT | 1 cut(s) | 117 |
| MaeIII | GTNAC | 1 cut(s) | 242 |
| MalI | GATC | 2 cut(s) | 140, 338 |
| MboI | GATC | 2 cut(s) | 138, 336 |
| MboII | GAAGA | 2 cut(s) | 32, 310 |
| MflI | RGATCY | 1 cut(s) | 336 |
| MhlI | GDGCHC | 2 cut(s) | 129, 382 |
| MluCI | AATT | 2 cut(s) | 84, 309 |
| MlyI | GAGTC | 1 cut(s) | 414 |
| MnlI | CCTC | 8 cut(s) | 60, 185, 214, 253, 256, 277, 316, 355 |
| MspR9I | CCNGG | 2 cut(s) | 169, 410 |
| MvaI | CCWGG | 2 cut(s) | 169, 410 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 235 |
| NdeII | GATC | 2 cut(s) | 138, 336 |
| NlaIII | CATG | 1 cut(s) | 67 |
| PkrI | GCNGC | 2 cut(s) | 61, 240 |
| PleI | GAGTC | 1 cut(s) | 413 |
| PpsI | GAGTC | 1 cut(s) | 413 |
| PpuMI | RGGWCCY | 1 cut(s) | 223 |
| Psp5II | RGGWCCY | 1 cut(s) | 223 |
| Psp6I | CCWGG | 2 cut(s) | 167, 408 |
| PspGI | CCWGG | 2 cut(s) | 167, 408 |
| PspPI | GGNCC | 2 cut(s) | 223, 416 |
| PspPPI | RGGWCCY | 1 cut(s) | 223 |
| PsuI | RGATCY | 1 cut(s) | 336 |
| RsaI | GTAC | 2 cut(s) | 198, 332 |
| RsaNI | GTAC | 2 cut(s) | 197, 331 |
| SatI | GCNGC | 2 cut(s) | 60, 239 |
| Sau3AI | GATC | 2 cut(s) | 138, 336 |
| Sau96I | GGNCC | 2 cut(s) | 223, 416 |
| SchI | GAGTC | 1 cut(s) | 414 |
| ScrFI | CCNGG | 2 cut(s) | 169, 410 |
| SduI | GDGCHC | 2 cut(s) | 129, 382 |
| SetI | ASST | 9 cut(s) | 19, 28, 43, 71, 108, 120, 196, 225, 267 |
| SinI | GGWCC | 1 cut(s) | 223 |
| SmlI | CTYRAG | 1 cut(s) | 399 |
| SmoI | CTYRAG | 1 cut(s) | 399 |
| Sse9I | AATT | 2 cut(s) | 84, 309 |
| SsiI | CCGC | 1 cut(s) | 172 |
| SspMI | CTAG | 2 cut(s) | 6, 107 |
| StyD4I | CCNGG | 2 cut(s) | 167, 408 |
| TaiI | ACGT | 1 cut(s) | 120 |
| TaqI | TCGA | 1 cut(s) | 159 |
| TasI | AATT | 2 cut(s) | 84, 309 |
| TatI | WGTACW | 2 cut(s) | 196, 330 |
| TscAI | CASTG | 1 cut(s) | 106 |
| TseI | GCWGC | 2 cut(s) | 59, 238 |
| TspRI | CASTG | 1 cut(s) | 106 |
| VpaK11BI | GGWCC | 1 cut(s) | 223 |
| XapI | RAATTY | 2 cut(s) | 84, 309 |
| XspI | CTAG | 2 cut(s) | 6, 107 |