Rh5DG428000

Protein TRANSPORT INHIBITOR RESPONSE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001768
Physical Location & Seq
Forward (+)
68332274 .. 68333656
1383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG428000.1

Sequence Viewer

Length: 327 bp
ATGATCTCTGACGAGAGCTTGGAGCTGATTGCCAAGTCTTTCAAGAATTTCAAGCTCCTTGTGCTTTCGTCCTGTGAGGGATTCAGTACCGATAGCCTTGCCTCCATTGCGGCTAATTGCAGGTTCATCTCTCTACTGCTATGGTTATCTATCAGGATTGGCAAAACCCTCAAAATCAACCTCAATGAGTTCCCTGGTGCCTACAGCGCTGACTCTACTGCAATTCCCGAGACTCTCACTTACCAGAGAAAGCATCAAAATATGGTGAAGGCCAAAAGGAACATGGAGCATGATACAGATCCTGGGAAGGATATTATGGGATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0000822 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0008144 GO:0008150 GO:0008152 GO:0009267 GO:0009555 GO:0009605 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0009991 GO:0010011 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010152 GO:0010311 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016036 GO:0016567 GO:0016740 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031461 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0032446 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033554 GO:0036094 GO:0036211 GO:0038023 GO:0038198 GO:0042221 GO:0042562 GO:0042594 GO:0043167 GO:0043168 GO:0043170 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045013 GO:0045014 GO:0045892 GO:0045934 GO:0045990 GO:0046015 GO:0048229 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060089 GO:0060255 GO:0061458 GO:0061984 GO:0061985 GO:0061986 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1990234 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

108

Amino Acids

12.05

Weight (kDa)

7.78

Isoelectric Point (pI)

18.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 111
AccB1I GGYRCC 1 cut(s) 197
AciI CCGC 1 cut(s) 110
AclWI GGATC 1 cut(s) 293
AcsI RAATTY 1 cut(s) 46
AfaI GTAC 1 cut(s) 88
AfeI AGCGCT 1 cut(s) 208
AgsI TTSAA 2 cut(s) 43, 52
AjnI CCWGG 2 cut(s) 193, 301
AluBI AGCT 3 cut(s) 18, 25, 55
AluI AGCT 3 cut(s) 18, 25, 55
Alw26I GTCTC 1 cut(s) 224
AlwI GGATC 1 cut(s) 293
AlwNI CAGNNNCTG 1 cut(s) 302
Ama87I CYCGRG 1 cut(s) 227
Aor51HI AGCGCT 1 cut(s) 208
AoxI GGCC 1 cut(s) 270
ApoI RAATTY 1 cut(s) 46
AspLEI GCGC 1 cut(s) 209
AsuHPI GGTGA 1 cut(s) 277
AvaI CYCGRG 1 cut(s) 227
BanI GGYRCC 1 cut(s) 197
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BciT130I CCWGG 2 cut(s) 195, 303
BcoDI GTCTC 1 cut(s) 224
BfmI CTRYAG 1 cut(s) 202
BfoI RGCGCY 1 cut(s) 210
BfuAI ACCTGC 1 cut(s) 111
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 2 cut(s) 195, 303
BmeT110I CYCGRG 1 cut(s) 227
BmiI GGNNCC 1 cut(s) 199
BmrFI CCNGG 2 cut(s) 195, 303
BmsI GCATC 1 cut(s) 262
BsaBI GATNNNNATC 1 cut(s) 297
BsaJI CCNNGG 2 cut(s) 193, 302
Bse3DI GCAATG 1 cut(s) 105
Bse8I GATNNNNATC 1 cut(s) 297
BseBI CCWGG 2 cut(s) 195, 303
BseDI CCNNGG 2 cut(s) 193, 302
BseJI GATNNNNATC 1 cut(s) 297
BseMI GCAATG 1 cut(s) 105
BshFI GGCC 1 cut(s) 272
BshNI GGYRCC 1 cut(s) 197
BsiHKCI CYCGRG 1 cut(s) 227
BsmAI GTCTC 1 cut(s) 224
BsnI GGCC 1 cut(s) 272
BsoBI CYCGRG 1 cut(s) 227
Bsp143I GATC 2 cut(s) 3, 298
BspACI CCGC 1 cut(s) 110
BspANI GGCC 1 cut(s) 272
BspLI GGNNCC 1 cut(s) 199
BspMI ACCTGC 1 cut(s) 111
BspPI GGATC 1 cut(s) 293
BspT107I GGYRCC 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 105
BssECI CCNNGG 2 cut(s) 193, 302
BssMI GATC 2 cut(s) 3, 298
Bst2UI CCWGG 2 cut(s) 195, 303
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 1 cut(s) 209
BstKTI GATC 2 cut(s) 6, 301
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 2 cut(s) 3, 298
BstMWI GCNNNNNNNGC 3 cut(s) 61, 107, 206
BstNI CCWGG 2 cut(s) 195, 303
BstSCI CCNGG 2 cut(s) 193, 301
BstSFI CTRYAG 1 cut(s) 202
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
BsuRI GGCC 1 cut(s) 272
BveI ACCTGC 1 cut(s) 111
CaiI CAGNNNCTG 1 cut(s) 302
CfoI GCGC 1 cut(s) 209
Csp6I GTAC 1 cut(s) 87
CviAII CATG 2 cut(s) 283, 290
CviJI RGCY 6 cut(s) 18, 25, 55, 96, 113, 272
CviKI_1 RGCY 6 cut(s) 18, 25, 55, 96, 113, 272
CviQI GTAC 1 cut(s) 87
DpnI GATC 2 cut(s) 5, 300
DpnII GATC 2 cut(s) 3, 298
Eco47III AGCGCT 1 cut(s) 208
Eco88I CYCGRG 1 cut(s) 227
EcoRII CCWGG 2 cut(s) 193, 301
FaeI CATG 2 cut(s) 286, 293
FaiI YATR 5 cut(s) 142, 263, 284, 291, 317
FatI CATG 2 cut(s) 282, 289
Fnu4HI GCNGC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 111
GlaI GCGC 1 cut(s) 208
GluI GCNGC 1 cut(s) 111
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 1 cut(s) 272
HhaI GCGC 1 cut(s) 209
Hin1II CATG 2 cut(s) 286, 293
Hin6I GCGC 1 cut(s) 207
HinP1I GCGC 1 cut(s) 207
HinfI GANTC 3 cut(s) 81, 212, 232
HphI GGTGA 1 cut(s) 277
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 3 cut(s) 43, 154, 227
HpyAV CCTTC 2 cut(s) 262, 301
HpyCH4V TGCA 2 cut(s) 120, 221
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 107, 206
Hsp92II CATG 2 cut(s) 286, 293
HspAI GCGC 1 cut(s) 207
Kzo9I GATC 2 cut(s) 3, 298
LmnI GCTCC 3 cut(s) 22, 60, 286
LpnPI CCDG 8 cut(s) 85, 106, 139, 180, 207, 257, 288, 315
LweI GCATC 1 cut(s) 262
MalI GATC 2 cut(s) 5, 300
MboI GATC 2 cut(s) 3, 298
MflI RGATCY 1 cut(s) 298
MluCI AATT 3 cut(s) 46, 115, 222
MlyI GAGTC 2 cut(s) 206, 226
MnlI CCTC 4 cut(s) 70, 112, 179, 191
MspR9I CCNGG 2 cut(s) 195, 303
MvaI CCWGG 2 cut(s) 195, 303
MwoI GCNNNNNNNGC 3 cut(s) 61, 107, 206
NdeII GATC 2 cut(s) 3, 298
NlaIII CATG 2 cut(s) 286, 293
NlaIV GGNNCC 1 cut(s) 199
PfeI GAWTC 1 cut(s) 81
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 2 cut(s) 206, 226
PpsI GAGTC 2 cut(s) 206, 226
Psp6I CCWGG 2 cut(s) 193, 301
PspGI CCWGG 2 cut(s) 193, 301
PspN4I GGNNCC 1 cut(s) 199
PstNI CAGNNNCTG 1 cut(s) 302
PsuI RGATCY 1 cut(s) 298
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 2 cut(s) 3, 298
SchI GAGTC 2 cut(s) 206, 226
ScrFI CCNGG 2 cut(s) 195, 303
SetI ASST 5 cut(s) 20, 27, 57, 125, 183
SfaNI GCATC 1 cut(s) 262
SfcI CTRYAG 1 cut(s) 202
Sse9I AATT 3 cut(s) 46, 115, 222
SsiI CCGC 1 cut(s) 110
StyD4I CCNGG 2 cut(s) 193, 301
TasI AATT 3 cut(s) 46, 115, 222
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 1 cut(s) 81
TspDTI ATGAA 1 cut(s) 115
XapI RAATTY 1 cut(s) 46
XcmI CCANNNNNNNNNTGG 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.