Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001768

Physical Location & Seq

Genomic Coordinates Forward (+)

61229800 .. 61232456

Gene Structure 2657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33411

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGTCTTCGCTCGCCTCGATCTACTCCATCGTTGAATCAGACATTGAAGTTGTTCTTCAGCTTCCGATCATTGAGATTAATCTGCAATTCATAACATTTACGCATGTTACTATGGAGTCCAATAAGTACGAATGTGTTCGGGCGCAGAATAGTATTGTGATTATTGATATGAGTGTGCCGAATCAATGCTCACTCTGTACTTATGAATCCAAACTCCCAAATCCTTGCTTTGAAAGGTGGCCGATGTCTTCTGCAGCAACATGTGCACTACTTCCCCTTGTGCTCCTTCTTGGTAGCTTTGTCTCAACATCAACAACATCACCAGCAGCATCTGGGTTGCCCAGGTCTACAGTCTTCTTCAGCAACAGGCGCACTAATTGTCCTCCTGCTTTTTTTTTTGTTCTTTCTTTGTCTTACCATCAACATTACAAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100

Pfam Domains

Protein Families

Clathrin Clathrin-link Clathrin_H_link Clathrin_propel

Protein Analysis

145

Amino Acids

16.18

Weight (kDa)

6.25

Isoelectric Point (pI)

68.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001768)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501101 RchiOBHm_Chr1g0337861 RchiOBHm_Chr3g0465841 RchiOBHm_Chr3g0478461 RchiOBHm_Chr4g0403301 RchiOBHm_Chr4g0426291 RchiOBHm_Chr5g0002501 RchiOBHm_Chr5g0047701 RchiOBHm_Chr5g0057331 RchiOBHm_Chr6g0289621 RchiOBHm_Chr6g0289631
rosa_laevigata	RLG00000014682 RLG00000018045
rosa_multiflora	Rmu_co8182516.1_g000001 Rmu_sc0000335.1_g000004 Rmu_sc0041332.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155570 Rroxscaffold_3G00238240
rosa_rugosa	Rorug04G0219900 Rorug04G0220000 Rorug04G0420300 Rorug04G0420400 Rorug04G0420500 Rorug04G0420600 Rorug05G0111700 Rorug05G0325900 Rorug05G0326000 Rorug06G0152100 Rorug06G0152200 Rorug06G0152300 Rorug07G0231200
rosa_samantha	Rh2AG305300 Rh3AG218400 Rh3BG144900 Rh3BG365600 Rh3CG146200 Rh3DG146000 Rh5AG097100 Rh5DG428000 Rh6AG164100 Rh6AG387400 Rh6BG079000 Rh6BG285500 Rh6BG475400 Rh6CG330000 Rh7AG293100 Rh7CG313100
rosa_wichuraiana	Rw6G033750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	347
AcoI	YGGCCR	1 cut(s)	239
AcuI	CTGAAG	2 cut(s)	41, 343
AfaI	GTAC	2 cut(s)	128, 199
AflIII	ACRYGT	1 cut(s)	260
AgsI	TTSAA	3 cut(s)	35, 47, 233
AjnI	CCWGG	1 cut(s)	341
AluBI	AGCT	2 cut(s)	61, 297
AluI	AGCT	2 cut(s)	61, 297
Alw21I	GWGCWC	2 cut(s)	268, 285
Alw26I	GTCTC	1 cut(s)	307
Alw44I	GTGCAC	1 cut(s)	264
AlwNI	CAGNNNCTG	1 cut(s)	332
AoxI	GGCC	1 cut(s)	239
ApaLI	GTGCAC	1 cut(s)	264
ApeKI	GCWGC	2 cut(s)	254, 326
AseI	ATTAAT	1 cut(s)	78
Asp700I	GAANNNNTTC	2 cut(s)	51, 135
AspLEI	GCGC	2 cut(s)	145, 372
AsuHPI	GGTGA	1 cut(s)	312
BaeGI	GKGCMC	1 cut(s)	268
BbsI	GAAGAC	2 cut(s)	240, 346
Bbv12I	GWGCWC	2 cut(s)	268, 285
BbvI	GCAGC	2 cut(s)	266, 338
BccI	CCATC	2 cut(s)	35, 426
BciT130I	CCWGG	1 cut(s)	343
BcoDI	GTCTC	1 cut(s)	307
BfmI	CTRYAG	2 cut(s)	252, 348
BisI	GCNGC	2 cut(s)	255, 327
BlsI	GCNGC	2 cut(s)	256, 328
Bme1390I	CCNGG	1 cut(s)	343
BmrFI	CCNGG	1 cut(s)	343
BmsI	GCATC	1 cut(s)	338
BpiI	GAAGAC	2 cut(s)	240, 346
BsaJI	CCNNGG	1 cut(s)	341
BseBI	CCWGG	1 cut(s)	343
BseDI	CCNNGG	1 cut(s)	341
BseSI	GKGCMC	1 cut(s)	268
BseXI	GCAGC	2 cut(s)	266, 338
BshFI	GGCC	1 cut(s)	241
BsiHKAI	GWGCWC	2 cut(s)	268, 285
BsmAI	GTCTC	1 cut(s)	307
BsnI	GGCC	1 cut(s)	241
Bsp1286I	GDGCHC	2 cut(s)	268, 285
Bsp143I	GATC	2 cut(s)	18, 66
BspANI	GGCC	1 cut(s)	241
BspMAI	CTGCAG	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	341
BssMI	GATC	2 cut(s)	18, 66
Bst2UI	CCWGG	1 cut(s)	343
Bst4CI	ACNGT	1 cut(s)	352
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	145, 372
BstKTI	GATC	2 cut(s)	21, 69
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	2 cut(s)	18, 66
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 369
BstNI	CCWGG	1 cut(s)	343
BstNSI	RCATGY	2 cut(s)	107, 264
BstSCI	CCNGG	1 cut(s)	341
BstSFI	CTRYAG	2 cut(s)	252, 348
BstSLI	GKGCMC	1 cut(s)	268
BstV1I	GCAGC	2 cut(s)	266, 338
BstV2I	GAAGAC	2 cut(s)	240, 346
BsuRI	GGCC	1 cut(s)	241
Cac8I	GCNNGC	1 cut(s)	12
CaiI	CAGNNNCTG	1 cut(s)	332
CfoI	GCGC	2 cut(s)	145, 372
Csp6I	GTAC	2 cut(s)	127, 198
CviAII	CATG	2 cut(s)	104, 261
CviJI	RGCY	3 cut(s)	61, 241, 297
CviKI_1	RGCY	3 cut(s)	61, 241, 297
CviQI	GTAC	2 cut(s)	127, 198
DpnI	GATC	2 cut(s)	20, 68
DpnII	GATC	2 cut(s)	18, 66
EaeI	YGGCCR	1 cut(s)	239
Eco57I	CTGAAG	2 cut(s)	41, 343
EcoRII	CCWGG	1 cut(s)	341
FaeI	CATG	2 cut(s)	107, 264
FaiI	YATR	6 cut(s)	92, 105, 113, 170, 204, 262
FalI	AAGNNNNNCTT	2 cut(s)	39, 71
FatI	CATG	2 cut(s)	103, 260
FblI	GTMKAC	1 cut(s)	347
Fnu4HI	GCNGC	2 cut(s)	255, 327
Fsp4HI	GCNGC	2 cut(s)	255, 327
GlaI	GCGC	2 cut(s)	144, 371
GluI	GCNGC	2 cut(s)	255, 327
HaeIII	GGCC	1 cut(s)	241
HhaI	GCGC	2 cut(s)	145, 372
Hin1II	CATG	2 cut(s)	107, 264
Hin6I	GCGC	2 cut(s)	143, 370
HinP1I	GCGC	2 cut(s)	143, 370
HinfI	GANTC	4 cut(s)	35, 116, 181, 206
HphI	GGTGA	1 cut(s)	312
Hpy166II	GTNNAC	2 cut(s)	266, 348
Hpy188I	TCNGA	2 cut(s)	40, 66
Hpy8I	GTNNAC	2 cut(s)	266, 348
HpyAV	CCTTC	1 cut(s)	296
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4V	TGCA	3 cut(s)	85, 254, 266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 369
Hsp92II	CATG	2 cut(s)	107, 264
HspAI	GCGC	2 cut(s)	143, 370
Kzo9I	GATC	2 cut(s)	18, 66
LmnI	GCTCC	1 cut(s)	288
LpnPI	CCDG	6 cut(s)	318, 328, 336, 352, 355, 399
Lsp1109I	GCAGC	2 cut(s)	266, 338
LweI	GCATC	1 cut(s)	338
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	2 cut(s)	20, 68
MboI	GATC	2 cut(s)	18, 66
MboII	GAAGA	4 cut(s)	47, 240, 346, 349
MhlI	GDGCHC	2 cut(s)	268, 285
MluCI	AATT	2 cut(s)	86, 376
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	2 cut(s)	25, 393
MroXI	GAANNNNTTC	2 cut(s)	51, 135
MseI	TTAA	1 cut(s)	78
MspR9I	CCNGG	1 cut(s)	343
MvaI	CCWGG	1 cut(s)	343
MwoI	GCNNNNNNNGC	2 cut(s)	263, 369
NdeII	GATC	2 cut(s)	18, 66
NlaIII	CATG	2 cut(s)	107, 264
NspI	RCATGY	2 cut(s)	107, 264
PciI	ACATGT	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PdmI	GAANNNNTTC	2 cut(s)	51, 135
PfeI	GAWTC	3 cut(s)	35, 181, 206
PkrI	GCNGC	2 cut(s)	256, 328
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PscI	ACATGT	1 cut(s)	260
PshBI	ATTAAT	1 cut(s)	78
Psp6I	CCWGG	1 cut(s)	341
PspGI	CCWGG	1 cut(s)	341
PstI	CTGCAG	1 cut(s)	256
PstNI	CAGNNNCTG	1 cut(s)	332
RsaI	GTAC	2 cut(s)	128, 199
RsaNI	GTAC	2 cut(s)	127, 198
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	2 cut(s)	255, 327
Sau3AI	GATC	2 cut(s)	18, 66
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	343
SduI	GDGCHC	2 cut(s)	268, 285
SetI	ASST	4 cut(s)	63, 239, 299, 347
SfaNI	GCATC	1 cut(s)	338
SfcI	CTRYAG	2 cut(s)	252, 348
Sse9I	AATT	2 cut(s)	86, 376
StyD4I	CCNGG	1 cut(s)	341
TaaI	ACNGT	1 cut(s)	352
TaqI	TCGA	1 cut(s)	17
TasI	AATT	2 cut(s)	86, 376
TatI	WGTACW	1 cut(s)	197
TfiI	GAWTC	3 cut(s)	35, 181, 206
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TseI	GCWGC	2 cut(s)	254, 326
TspDTI	ATGAA	2 cut(s)	79, 219
VneI	GTGCAC	1 cut(s)	264
VspI	ATTAAT	1 cut(s)	78
XceI	RCATGY	2 cut(s)	107, 264
XmiI	GTMKAC	1 cut(s)	347
XmnI	GAANNNNTTC	2 cut(s)	51, 135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.