Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001768

Physical Location & Seq

Genomic Coordinates Forward (+)

58071894 .. 58076154

Gene Structure 4261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0420300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2805 bp

ATGGGTTTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTCACAGTGTGGGGCTGTGCAGCCCCAGAGCGAGGACCAGCCAGCCATGGAAGATATCCTGAAAAGCTTGACGTCCAAACTACCGGCCAAGTGGAAGTCCGGCACCGATTGCTGCACCTGGGGCGGAGTCTCGTGCGACAATAGCAACAGGGTAACCGGCCTCGTCATCAAGGAGTTAAATCTGACGGGTACACTCAGTCCGTCGGTTCGAAACCTCACGTCGTTGCAGAATCTGCAATTTATGCGGAACAAACTCACGGGAGGCTTCCCGAGTCTCAAAGGCCTCGGTTCGCTCCAGCAGCTTTACGGCAACGAGAACGGCTTCACTTCTTTTCCGGCGGGTGATTTCTTCTCCGGCCTTTCTTCCCTTCGGCAAATCTTCATCGGTCAGAATCCCTTCTCCCCGTGGCAGATTCCGGAGAGCATCAAAGACGCCTCGAGCCTGACGACATTTTTAGCCGGTGGAGCCAACATTACAGGTAAAATCCCGGATTACTTTAACTCCACCTATATGCCGAGTTTGACAGACTTGGATTTGGATTCGAATCAGCTCCAAGGCGGGTTGCCTTGGAGTTTCGCTGGTTCCATTATCAAGACACTTAGGTTGGAGAACAATGAGCTTAGCGGCACTCTTGATGTGTTACAGAACATGACCGAGCTGAATCAAGTTCATTTAAATAGGAATAAGTTCACAGGTCCTTTGCCAGATTTTTCCAACTTCAACAACTTAACATTCTTTGACGTGAGGGATAATCAGCTCACTGGTGTTATTCCTTCTTCATTGCTGAATCAACCCTCCCTAGCCAATGTTACGTTGAGCAACAATTTGTTTCAGGGCCCCAAGCCCAAGTTCAAGAGTGGTGTTGGGTTGGATATGGATATAGGGAATATGTTTTGCAATCCTAATGTCGGTCAAGATTGCGATCCCCGTGTTGATATATTGCTTTCGATTGCCAGAGACATGGGCTACCCTACTACGTTTGCACAAAATTGGATGGGGAATGATCCTTGTGCTGCCAATGGTGGTTCTTGGCTTGGCTTGACATGTTCAGGAGGGAACATTACCAGAATCAACTTTGGTAAAAGGGGCCTGGCAGGTACAATATCCTCTAACTTTTCCTTGCTTACATCGTTGACAGATTTGAGACTCAATGATAATGTCTTGACTGGGACTATACCTGTGGAGCTTACGAAACTTCCAAACCTTAAGAATGTAGATTTCTCAAACAATAGACTCTATGGTAAAATACCACAGTTTCAAGATGGTGTTGTTGTGAAATTAGAGGGAAACCCTGACATAGGTAAGGACCAGCCTAGCACACCTACGGGTCCGGGTCAGCCTAGCACACCTCCGGCTCCGGGTCCTAATGGTGGAGGTGACAAGAAATCCCAGACTGGTGTGATTATTGGGGTTGTTGTCGGATGTATTGTTGGATTGGTTCTAGTTGGGGTTCTCGTCTTTTGTATGGTGAAGAAAAAACAGAGGCGTTCTGGTAAAGTGCAAAGTCCAAACTCGTTGGTTATACACCCTCGTCATTCTGGTGATCAAAATGCTGTCAAAATTTCAGTTGCTAATAGGTTAAATAGCAGTGGAAATGAGTCTTACAATAGTCCCCCAAATAATGGACCTAATGACATCCATGTTGAGGCTGGAAATATGATCATTTCTATCCAAGTTTTGAGGAGTGTGACCAATAACTTCAATGAAGATAAGATATTGGGAAAAGGTGGGTTTGGAACTGTGTATGGAGGAGAATTGCATGATGGAACAAAAATTGCAGTGAAGAGAATGGAATCTGGTGTGGTAGCTGAGAAAGGCCTGCATGAGTTCAAGTCTGAGATTGCAGTTCTTACTAAGGTCCGACATCGTCACTTAGTGGGACTTCTTGGATATTGTTTGGATGGGAATGAGAGGCTTCTTGTCTATGAGCACATGCCGCAGGGGACTCTTAGTAGACATTTGTTCAACTGGAAAGAAGAAGGGCTGGAGCCACTTGAATGGACTAGAAGACTGACCATTGCCTTGGATGTTGCGAGAGGGGTTGAATACCTGCACGGTTTGGCCAACGAAATTTTCATTCATAGAGACCTTAAGCCTTCTAATATATTACTTGGAGATGATATGCGGGCAAAAGTGGCAGACTTTGGATTGGTTCGTCTTGCTCCAGCAGGGAAAGCCTCTATAGAGACGAGACTAGCAGGAACTTTTGGTTATTTGGCTCCAGAATATGCAGCAACCGGACGGATGACACTCAAGGTAGATGTGTACAGCTTTGGTGTAATATTAATGGAGTTGATCACTGGTAGAAAGGCAATTGACGAAAGCCAGCCTGAGGAGAGTTGTCACCTAGTGACATGGTTTCGTAGAAAGCTCATTAAAACAGATGCACTCCCTGAGATTGTTGATCCAACCATTGATGTCAATGAGGAAACTCTTTCTAGTATAAGCACGGTGGCTGAGCTTGCCGGTCATTGCAGCGCAAGGGAGCCGTACCAAAGGCCTGACATGGGTCATGCAGTCAATGTACTTTCATCACTTGTTGAGCAGTGGAAACCCTCTAAACAAGAAGATTTTGATGACATGGATGCAATCAACTTTGATGTGCCACTAAAAGAAGCAGTAAAGAGGTGGCAGGCTGCTGAGGGCAAAAGCAACATCGATGACTCTTCATCTTCGTCAATATTTCCTAGCGGGGATACTACCCAGACCAGCATACCTAACCGGCCTTCTGGATTTGCTGAGTCTTTTACATCATCAGATGGGCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005798 GO:0005829 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0008150 GO:0012505 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coatomer_E

Protein Analysis

934

Amino Acids

101.4

Weight (kDa)

6.0

Isoelectric Point (pI)

36.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	579 - 852	8.3e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	582 - 799	1.6e-42	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001768)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501101 RchiOBHm_Chr1g0337861 RchiOBHm_Chr3g0465841 RchiOBHm_Chr3g0478461 RchiOBHm_Chr4g0403301 RchiOBHm_Chr4g0426291 RchiOBHm_Chr5g0002501 RchiOBHm_Chr5g0047701 RchiOBHm_Chr5g0057331 RchiOBHm_Chr6g0289621 RchiOBHm_Chr6g0289631
rosa_laevigata	RLG00000014682 RLG00000018045
rosa_multiflora	Rmu_co8182516.1_g000001 Rmu_sc0000335.1_g000004 Rmu_sc0041332.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155570 Rroxscaffold_3G00238240
rosa_rugosa	Rorug04G0219900 Rorug04G0220000 Rorug04G0420300 Rorug04G0420400 Rorug04G0420500 Rorug04G0420600 Rorug05G0111700 Rorug05G0325900 Rorug05G0326000 Rorug06G0152100 Rorug06G0152200 Rorug06G0152300 Rorug07G0231200
rosa_samantha	Rh2AG305300 Rh3AG218400 Rh3BG144900 Rh3BG365600 Rh3CG146200 Rh3DG146000 Rh5AG097100 Rh5DG428000 Rh6AG164100 Rh6AG387400 Rh6BG079000 Rh6BG285500 Rh6BG475400 Rh6CG330000 Rh7AG293100 Rh7CG313100
rosa_wichuraiana	Rw6G033750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	110
Acc36I	ACCTGC	2 cut(s)	1121, 2094
AccB1I	GGYRCC	1 cut(s)	137
AccB7I	CCANNNNNTGG	1 cut(s)	1658
AccI	GTMKAC	1 cut(s)	1990
AccIII	TCCGGA	1 cut(s)	451
AciI	CCGC	9 cut(s)	159, 280, 374, 594, 660, 1973, 2161, 2727, 2800
AclWI	GGATC	3 cut(s)	953, 1034, 2435
AcoI	YGGCCR	2 cut(s)	120, 2097
AcsI	RAATTY	2 cut(s)	1596, 2106
AcyI	GRCGYC	2 cut(s)	107, 468
AdeI	CACNNNGTG	3 cut(s)	44, 1912, 2386
AfaI	GTAC	5 cut(s)	226, 1135, 2303, 2528, 2562
AfiI	CCNNNNNNNGG	9 cut(s)	67, 944, 1334, 1394, 1406, 1658, 1681, 2368, 2543
AflII	CTTAAG	2 cut(s)	1241, 2126
AflIII	ACRYGT	1 cut(s)	1079
AgsI	TTSAA	8 cut(s)	757, 889, 1295, 1738, 1867, 2002, 2033, 2081
AjiI	CACGTC	2 cut(s)	255, 778
AjnI	CCWGG	2 cut(s)	152, 1125
AjuI	GAANNNNNNNTTGG	4 cut(s)	869, 901, 2093, 2125
Alw21I	GWGCWC	1 cut(s)	1968
Alw26I	GTCTC	7 cut(s)	169, 314, 987, 1174, 2115, 2216, 2221
AlwI	GGATC	3 cut(s)	953, 1034, 2435
AlwNI	CAGNNNCTG	1 cut(s)	268
Ama87I	CYCGRG	2 cut(s)	304, 472
Aor13HI	TCCGGA	1 cut(s)	451
ApaI	GGGCCC	1 cut(s)	875
ApeKI	GCWGC	7 cut(s)	55, 147, 334, 1049, 2267, 2511, 2672
ApoI	RAATTY	2 cut(s)	1596, 2106
AseI	ATTAAT	1 cut(s)	2321
Asp700I	GAANNNNTTC	3 cut(s)	356, 431, 722
AspLEI	GCGC	1 cut(s)	2516
AsuC2I	CCSGG	3 cut(s)	524, 1368, 1395
AsuHPI	GGTGA	5 cut(s)	389, 1424, 1516, 1589, 2372
AsuII	TTCGAA	2 cut(s)	244, 578
AvaI	CYCGRG	2 cut(s)	304, 472
AvaII	GGWCC	7 cut(s)	70, 731, 1342, 1364, 1397, 1661, 1894
AxyI	CCTNAGG	1 cut(s)	2367
BaeGI	GKGCMC	1 cut(s)	875
BalI	TGGCCA	1 cut(s)	2099
BanI	GGYRCC	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	875
BauI	CACGAG	1 cut(s)	166
BbsI	GAAGAC	1 cut(s)	2050
Bbv12I	GWGCWC	1 cut(s)	1968
BbvCI	CCTCAGC	1 cut(s)	2676
BbvI	GCAGC	7 cut(s)	67, 134, 346, 1036, 2279, 2523, 2659
BccI	CCATC	5 cut(s)	1024, 1292, 1793, 1931, 2789
BceAI	ACGGC	3 cut(s)	358, 370, 2509
BciT130I	CCWGG	2 cut(s)	154, 1127
BciVI	GTATCC	1 cut(s)	2725
BclI	TGATCA	3 cut(s)	1579, 1695, 2331
BcnI	CCSGG	3 cut(s)	524, 1368, 1395
BcoDI	GTCTC	7 cut(s)	169, 314, 987, 1174, 2115, 2216, 2221
BfaI	CTAG	9 cut(s)	836, 1350, 1377, 1478, 2040, 2231, 2384, 2475, 2724
BfmI	CTRYAG	1 cut(s)	2217
BfrI	CTTAAG	2 cut(s)	1241, 2126
BfuAI	ACCTGC	2 cut(s)	1121, 2094
BfuI	GTATCC	1 cut(s)	2725
BisI	GCNGC	9 cut(s)	56, 148, 335, 661, 1050, 1973, 2268, 2512, 2673
BlpI	GCTNAGC	2 cut(s)	656, 2493
BlsI	GCNGC	9 cut(s)	57, 149, 336, 662, 1051, 1974, 2269, 2513, 2674
Bme1390I	CCNGG	5 cut(s)	154, 524, 1127, 1368, 1395
Bme18I	GGWCC	7 cut(s)	70, 731, 1342, 1364, 1397, 1661, 1894
BmeT110I	CYCGRG	2 cut(s)	304, 472
BmgBI	CACGTC	2 cut(s)	255, 778
BmrFI	CCNGG	5 cut(s)	154, 524, 1127, 1368, 1395
BmrI	ACTGGG	1 cut(s)	1212
BmsI	GCATC	3 cut(s)	468, 2410, 2611
BmuI	ACTGGG	1 cut(s)	1212
BoxI	GACNNNNGTC	1 cut(s)	2544
BpiI	GAAGAC	1 cut(s)	2050
BpmI	CTGGAG	4 cut(s)	314, 2042, 2184, 2241
Bpu10I	CCTNAGC	1 cut(s)	2676
Bpu1102I	GCTNAGC	2 cut(s)	656, 2493
Bpu14I	TTCGAA	2 cut(s)	244, 578
BpuEI	CTTGAG	1 cut(s)	2273
BpuMI	CCSGG	3 cut(s)	524, 1368, 1395
Bsa29I	ATCGAT	1 cut(s)	2694
BsaBI	GATNNNNATC	2 cut(s)	579, 957
BsaHI	GRCGYC	2 cut(s)	107, 468
BsaI	GGTCTC	1 cut(s)	2115
BsaJI	CCNNGG	7 cut(s)	81, 153, 319, 440, 589, 602, 2058
BsaWI	WCCGGW	2 cut(s)	451, 2273
BsaXI	ACNNNNNCTCC	2 cut(s)	521, 551
Bsc4I	CCNNNNNNNGG	9 cut(s)	67, 944, 1334, 1394, 1406, 1658, 1681, 2368, 2543
Bse118I	RCCGGY	5 cut(s)	118, 191, 494, 2501, 2757
Bse1I	ACTGG	5 cut(s)	802, 1207, 1435, 2009, 2341
Bse21I	CCTNAGG	1 cut(s)	2367
Bse3DI	GCAATG	3 cut(s)	815, 2052, 2506
Bse8I	GATNNNNATC	2 cut(s)	579, 957
BseAI	TCCGGA	1 cut(s)	451
BseBI	CCWGG	2 cut(s)	154, 1127
BseCI	ATCGAT	1 cut(s)	2694
BseDI	CCNNGG	7 cut(s)	81, 153, 319, 440, 589, 602, 2058
BseGI	GGATG	7 cut(s)	1035, 1463, 1671, 1942, 2068, 2286, 2626
BseJI	GATNNNNATC	2 cut(s)	579, 957
BseLI	CCNNNNNNNGG	9 cut(s)	67, 944, 1334, 1394, 1406, 1658, 1681, 2368, 2543
BseMI	GCAATG	3 cut(s)	815, 2052, 2506
BseMII	CTCAG	8 cut(s)	244, 1836, 1863, 2358, 2421, 2484, 2667, 2766
BseNI	ACTGG	5 cut(s)	802, 1207, 1435, 2009, 2341
BseRI	GAGGAG	3 cut(s)	1732, 1800, 2384
BseSI	GKGCMC	1 cut(s)	875
BseXI	GCAGC	7 cut(s)	67, 134, 346, 1036, 2279, 2523, 2659
BsgI	GTGCAG	3 cut(s)	74, 133, 2072
BshNI	GGYRCC	1 cut(s)	137
BshVI	ATCGAT	1 cut(s)	2694
BsiHKAI	GWGCWC	1 cut(s)	1968
BsiHKCI	CYCGRG	2 cut(s)	304, 472
BslFI	GGGAC	4 cut(s)	1219, 1632, 1929, 1993
BslI	CCNNNNNNNGG	9 cut(s)	67, 944, 1334, 1394, 1406, 1658, 1681, 2368, 2543
BsmAI	GTCTC	7 cut(s)	169, 314, 987, 1174, 2115, 2216, 2221
BsmBI	CGTCTC	1 cut(s)	2216
BsmFI	GGGAC	4 cut(s)	1219, 1632, 1929, 1993
Bso31I	GGTCTC	1 cut(s)	2115
BsoBI	CYCGRG	2 cut(s)	304, 472
Bsp119I	TTCGAA	2 cut(s)	244, 578
Bsp120I	GGGCCC	1 cut(s)	871
Bsp1286I	GDGCHC	2 cut(s)	875, 1968
Bsp13I	TCCGGA	1 cut(s)	451
Bsp1407I	TGTACA	1 cut(s)	2301
Bsp143I	GATC	6 cut(s)	958, 1039, 1579, 1695, 2331, 2440
Bsp1720I	GCTNAGC	2 cut(s)	656, 2493
Bsp19I	CCATGG	1 cut(s)	81
BspACI	CCGC	9 cut(s)	159, 280, 374, 594, 660, 1973, 2161, 2727, 2800
BspCNI	CTCAG	8 cut(s)	243, 1837, 1864, 2359, 2422, 2485, 2668, 2767
BspDI	ATCGAT	1 cut(s)	2694
BspEI	TCCGGA	1 cut(s)	451
BspMI	ACCTGC	2 cut(s)	1121, 2094
BspPI	GGATC	3 cut(s)	953, 1034, 2435
BspT104I	TTCGAA	2 cut(s)	244, 578
BspT107I	GGYRCC	1 cut(s)	137
BspTI	CTTAAG	2 cut(s)	1241, 2126
BspTNI	GGTCTC	1 cut(s)	2115
BsrDI	GCAATG	3 cut(s)	815, 2052, 2506
BsrFI	RCCGGY	5 cut(s)	118, 191, 494, 2501, 2757
BsrGI	TGTACA	1 cut(s)	2301
BsrI	ACTGG	5 cut(s)	802, 1207, 1435, 2009, 2341
BssAI	RCCGGY	5 cut(s)	118, 191, 494, 2501, 2757
BssECI	CCNNGG	7 cut(s)	81, 153, 319, 440, 589, 602, 2058
BssMI	GATC	6 cut(s)	958, 1039, 1579, 1695, 2331, 2440
BssNI	GRCGYC	2 cut(s)	107, 468
BssSI	CACGAG	1 cut(s)	166
BssT1I	CCWWGG	4 cut(s)	81, 589, 602, 2058
Bst2BI	CACGAG	1 cut(s)	166
Bst2UI	CCWGG	2 cut(s)	154, 1127
Bst4CI	ACNGT	5 cut(s)	42, 1290, 1777, 2093, 2488
Bst6I	CTCTTC	2 cut(s)	1814, 2707
BstACI	GRCGYC	2 cut(s)	107, 468
BstAFI	CTTAAG	2 cut(s)	1241, 2126
BstAPI	GCANNNNNTGC	3 cut(s)	144, 268, 277
BstAUI	TGTACA	1 cut(s)	2301
BstBI	TTCGAA	2 cut(s)	244, 578
BstC8I	GCNNGC	6 cut(s)	78, 1856, 2163, 2363, 2499, 2670
BstDSI	CCRYGG	2 cut(s)	81, 440
BstEII	GGTNACC	1 cut(s)	187
BstENI	CCTNNNNNAGG	1 cut(s)	1332
BstF5I	GGATG	7 cut(s)	1035, 1463, 1671, 1942, 2068, 2286, 2626
BstHHI	GCGC	1 cut(s)	2516
BstKTI	GATC	6 cut(s)	961, 1042, 1582, 1698, 2334, 2443
BstMAI	GTCTC	7 cut(s)	169, 314, 987, 1174, 2115, 2216, 2221
BstMBI	GATC	6 cut(s)	958, 1039, 1579, 1695, 2331, 2440
BstNI	CCWGG	2 cut(s)	154, 1127
BstNSI	RCATGY	2 cut(s)	1083, 1972
BstPAI	GACNNNNGTC	1 cut(s)	2544
BstPI	GGTNACC	1 cut(s)	187
BstSCI	CCNGG	5 cut(s)	152, 522, 1125, 1366, 1393
BstSFI	CTRYAG	1 cut(s)	2217
BstSLI	GKGCMC	1 cut(s)	875
BstV1I	GCAGC	7 cut(s)	67, 134, 346, 1036, 2279, 2523, 2659
BstV2I	GAAGAC	1 cut(s)	2050
BstXI	CCANNNNNNTGG	3 cut(s)	997, 2034, 2059
Bsu15I	ATCGAT	1 cut(s)	2694
Bsu36I	CCTNAGG	1 cut(s)	2367
BsuI	GTATCC	1 cut(s)	2725
BsuTUI	ATCGAT	1 cut(s)	2694
BtgI	CCRYGG	2 cut(s)	81, 440
BtrI	CACGTC	2 cut(s)	255, 778
BtsCI	GGATG	7 cut(s)	1035, 1463, 1671, 1942, 2068, 2286, 2626
BtsI	GCAGTG	3 cut(s)	1630, 1821, 2588
BtsIMutI	CAGTG	6 cut(s)	47, 795, 1630, 1821, 2334, 2588
BveI	ACCTGC	2 cut(s)	1121, 2094
Cac8I	GCNNGC	6 cut(s)	78, 1856, 2163, 2363, 2499, 2670
CaiI	CAGNNNCTG	1 cut(s)	268
CfoI	GCGC	1 cut(s)	2516
Cfr10I	RCCGGY	5 cut(s)	118, 191, 494, 2501, 2757
ClaI	ATCGAT	1 cut(s)	2694
CseI	GACGC	1 cut(s)	476
Csp6I	GTAC	5 cut(s)	225, 1134, 2302, 2527, 2561
CviQI	GTAC	5 cut(s)	225, 1134, 2302, 2527, 2561
DpnI	GATC	6 cut(s)	960, 1041, 1581, 1697, 2333, 2442
DpnII	GATC	6 cut(s)	958, 1039, 1579, 1695, 2331, 2440
DraI	TTTAAA	1 cut(s)	711
DraIII	CACNNNGTG	3 cut(s)	44, 1912, 2386
EaeI	YGGCCR	2 cut(s)	120, 2097
Eam1104I	CTCTTC	2 cut(s)	1814, 2707
EarI	CTCTTC	2 cut(s)	1814, 2707
EciI	GGCGGA	1 cut(s)	174
Eco130I	CCWWGG	4 cut(s)	81, 589, 602, 2058
Eco147I	AGGCCT	3 cut(s)	318, 1854, 2536
Eco24I	GRGCYC	1 cut(s)	875
Eco31I	GGTCTC	1 cut(s)	2115
Eco32I	GATATC	1 cut(s)	91
Eco47I	GGWCC	7 cut(s)	70, 731, 1342, 1364, 1397, 1661, 1894
Eco81I	CCTNAGG	1 cut(s)	2367
Eco88I	CYCGRG	2 cut(s)	304, 472
Eco91I	GGTNACC	1 cut(s)	187
EcoNI	CCTNNNNNAGG	1 cut(s)	1332
EcoO109I	RGGNCCY	5 cut(s)	731, 871, 872, 1123, 1397
EcoO65I	GGTNACC	1 cut(s)	187
EcoRII	CCWGG	2 cut(s)	152, 1125
EcoRV	GATATC	1 cut(s)	91
EcoT14I	CCWWGG	4 cut(s)	81, 589, 602, 2058
EcoT38I	GRGCYC	1 cut(s)	875
ErhI	CCWWGG	4 cut(s)	81, 589, 602, 2058
Esp3I	CGTCTC	1 cut(s)	2216
FaqI	GGGAC	4 cut(s)	1219, 1632, 1929, 1993
FauI	CCCGC	4 cut(s)	367, 587, 2154, 2720
FbaI	TGATCA	3 cut(s)	1579, 1695, 2331
FblI	GTMKAC	1 cut(s)	1990
Fnu4HI	GCNGC	9 cut(s)	56, 148, 335, 661, 1050, 1973, 2268, 2512, 2673
FokI	GGATG	7 cut(s)	1042, 1470, 1658, 1949, 2075, 2293, 2633
FriOI	GRGCYC	1 cut(s)	875
Fsp4HI	GCNGC	9 cut(s)	56, 148, 335, 661, 1050, 1973, 2268, 2512, 2673
FspBI	CTAG	9 cut(s)	836, 1350, 1377, 1478, 2040, 2231, 2384, 2475, 2724
GlaI	GCGC	1 cut(s)	2515
GluI	GCNGC	9 cut(s)	56, 148, 335, 661, 1050, 1973, 2268, 2512, 2673
GsuI	CTGGAG	4 cut(s)	314, 2042, 2184, 2241
HgaI	GACGC	1 cut(s)	476
HhaI	GCGC	1 cut(s)	2516
Hin1I	GRCGYC	2 cut(s)	107, 468
Hin6I	GCGC	1 cut(s)	2514
HinP1I	GCGC	1 cut(s)	2514
HincII	GTYRAC	1 cut(s)	1170
HindII	GTYRAC	1 cut(s)	1170
HindIII	AAGCTT	1 cut(s)	100
HphI	GGTGA	5 cut(s)	389, 1424, 1516, 1589, 2372
Hpy166II	GTNNAC	5 cut(s)	227, 726, 1170, 1991, 2302
Hpy188I	TCNGA	6 cut(s)	219, 426, 1457, 1873, 1898, 2794
Hpy8I	GTNNAC	5 cut(s)	227, 726, 1170, 1991, 2302
Hpy99I	CGWCG	2 cut(s)	241, 259
HpyAV	CCTTC	6 cut(s)	413, 442, 819, 2009, 2142, 2772
HpyCH4III	ACNGT	5 cut(s)	42, 1290, 1777, 2093, 2488
HpyCH4IV	ACGT	5 cut(s)	107, 254, 777, 848, 1013
HpySE526I	ACGT	5 cut(s)	107, 254, 777, 848, 1013
Hsp92I	GRCGYC	2 cut(s)	107, 468
HspAI	GCGC	1 cut(s)	2514
Kpn2I	TCCGGA	1 cut(s)	451
Ksp22I	TGATCA	3 cut(s)	1579, 1695, 2331
Kzo9I	GATC	6 cut(s)	958, 1039, 1579, 1695, 2331, 2440
LmnI	GCTCC	9 cut(s)	333, 500, 591, 1219, 1396, 2023, 2203, 2260, 2521
Lsp1109I	GCAGC	7 cut(s)	67, 134, 346, 1036, 2279, 2523, 2659
LweI	GCATC	3 cut(s)	468, 2410, 2611
MaeI	CTAG	9 cut(s)	836, 1350, 1377, 1478, 2040, 2231, 2384, 2475, 2724
MaeII	ACGT	5 cut(s)	107, 254, 777, 848, 1013
MaeIII	GTNAC	9 cut(s)	36, 187, 675, 844, 1412, 1723, 1904, 2378, 2386
MalI	GATC	6 cut(s)	960, 1041, 1581, 1697, 2333, 2442
MboI	GATC	6 cut(s)	958, 1039, 1579, 1695, 2331, 2440
MfeI	CAATTG	1 cut(s)	2349
MhlI	GDGCHC	2 cut(s)	875, 1968
MlsI	TGGCCA	1 cut(s)	2099
MluCI	AATT	9 cut(s)	272, 859, 1024, 1313, 1596, 1790, 1809, 2106, 2349
MluNI	TGGCCA	1 cut(s)	2099
MlyI	GAGTC	8 cut(s)	171, 316, 1176, 1263, 1643, 1975, 2693, 2786
MmeI	TCCRAC	7 cut(s)	621, 774, 885, 1435, 1447, 1921, 2468
Mox20I	TGGCCA	1 cut(s)	2099
MroI	TCCGGA	1 cut(s)	451
MroXI	GAANNNNTTC	3 cut(s)	356, 431, 722
MscI	TGGCCA	1 cut(s)	2099
MseI	TTAA	9 cut(s)	212, 534, 710, 764, 1242, 1616, 2127, 2321, 2412
MslI	CAYNNNNRTG	3 cut(s)	545, 1575, 2032
Msp20I	TGGCCA	1 cut(s)	2099
MspCI	CTTAAG	2 cut(s)	1241, 2126
MspR9I	CCNGG	5 cut(s)	154, 524, 1127, 1368, 1395
MunI	CAATTG	1 cut(s)	2349
MvaI	CCWGG	2 cut(s)	154, 1127
NciI	CCSGG	3 cut(s)	524, 1368, 1395
NcoI	CCATGG	1 cut(s)	81
NdeII	GATC	6 cut(s)	958, 1039, 1579, 1695, 2331, 2440
NmeAIII	GCCGAG	1 cut(s)	576
NmuCI	GTSAC	6 cut(s)	36, 1412, 1723, 1904, 2378, 2386
NspI	RCATGY	2 cut(s)	1083, 1972
NspV	TTCGAA	2 cut(s)	244, 578
PaeR7I	CTCGAG	1 cut(s)	472
PceI	AGGCCT	3 cut(s)	318, 1854, 2536
PciI	ACATGT	1 cut(s)	1079
PcsI	WCGNNNNNNNCGW	1 cut(s)	479
PdmI	GAANNNNTTC	3 cut(s)	356, 431, 722
PfeI	GAWTC	9 cut(s)	265, 427, 448, 575, 580, 697, 823, 1104, 1829
PflFI	GACNNNGTC	1 cut(s)	1902
PflMI	CCANNNNNTGG	1 cut(s)	1658
PfoI	TCCNGGA	1 cut(s)	522
PkrI	GCNGC	9 cut(s)	57, 149, 336, 662, 1051, 1974, 2269, 2513, 2674
PleI	GAGTC	8 cut(s)	170, 315, 1176, 1263, 1642, 1975, 2693, 2785
PpsI	GAGTC	8 cut(s)	170, 315, 1176, 1263, 1642, 1975, 2693, 2785
PpuMI	RGGWCCY	2 cut(s)	731, 1397
PscI	ACATGT	1 cut(s)	1079
PshAI	GACNNNNGTC	1 cut(s)	2544
PshBI	ATTAAT	1 cut(s)	2321
Psp5II	RGGWCCY	2 cut(s)	731, 1397
Psp6I	CCWGG	2 cut(s)	152, 1125
PspEI	GGTNACC	1 cut(s)	187
PspGI	CCWGG	2 cut(s)	152, 1125
PspOMI	GGGCCC	1 cut(s)	871
PspPPI	RGGWCCY	2 cut(s)	731, 1397
PspXI	VCTCGAGB	1 cut(s)	472
PstNI	CAGNNNCTG	1 cut(s)	268
PsyI	GACNNNGTC	1 cut(s)	1902
RsaI	GTAC	5 cut(s)	226, 1135, 2303, 2528, 2562
RsaNI	GTAC	5 cut(s)	225, 1134, 2302, 2527, 2561
RseI	CAYNNNNRTG	3 cut(s)	545, 1575, 2032
SaqAI	TTAA	9 cut(s)	212, 534, 710, 764, 1242, 1616, 2127, 2321, 2412
SatI	GCNGC	9 cut(s)	56, 148, 335, 661, 1050, 1973, 2268, 2512, 2673
Sau3AI	GATC	6 cut(s)	958, 1039, 1579, 1695, 2331, 2440
SchI	GAGTC	8 cut(s)	171, 316, 1176, 1263, 1643, 1975, 2693, 2786
ScrFI	CCNGG	5 cut(s)	154, 524, 1127, 1368, 1395
SduI	GDGCHC	2 cut(s)	875, 1968
SfaNI	GCATC	3 cut(s)	468, 2410, 2611
SfcI	CTRYAG	1 cut(s)	2217
Sfr274I	CTCGAG	1 cut(s)	472
SfuI	TTCGAA	2 cut(s)	244, 578
SinI	GGWCC	7 cut(s)	70, 731, 1342, 1364, 1397, 1661, 1894
SlaI	CTCGAG	1 cut(s)	472
SmiI	ATTTAAAT	1 cut(s)	711
SmiMI	CAYNNNNRTG	3 cut(s)	545, 1575, 2032
SmlI	CTYRAG	4 cut(s)	472, 1241, 2126, 2288
SmoI	CTYRAG	4 cut(s)	472, 1241, 2126, 2288
Sse9I	AATT	9 cut(s)	272, 859, 1024, 1313, 1596, 1790, 1809, 2106, 2349
SseBI	AGGCCT	3 cut(s)	318, 1854, 2536
SsiI	CCGC	9 cut(s)	159, 280, 374, 594, 660, 1973, 2161, 2727, 2800
SspI	AATATT	2 cut(s)	2319, 2718
SspMI	CTAG	9 cut(s)	836, 1350, 1377, 1478, 2040, 2231, 2384, 2475, 2724
StuI	AGGCCT	3 cut(s)	318, 1854, 2536
StyD4I	CCNGG	5 cut(s)	152, 522, 1125, 1366, 1393
StyI	CCWWGG	4 cut(s)	81, 589, 602, 2058
SwaI	ATTTAAAT	1 cut(s)	711
TaaI	ACNGT	5 cut(s)	42, 1290, 1777, 2093, 2488
TaiI	ACGT	5 cut(s)	110, 257, 780, 851, 1016
TaqI	TCGA	5 cut(s)	244, 473, 578, 983, 2694
TaqII	GACCGA	3 cut(s)	410, 704, 935
TasI	AATT	9 cut(s)	272, 859, 1024, 1313, 1596, 1790, 1809, 2106, 2349
TatI	WGTACW	2 cut(s)	2301, 2560
TauI	GCSGC	2 cut(s)	663, 1975
TfiI	GAWTC	9 cut(s)	265, 427, 448, 575, 580, 697, 823, 1104, 1829
Tru1I	TTAA	9 cut(s)	212, 534, 710, 764, 1242, 1616, 2127, 2321, 2412
Tru9I	TTAA	9 cut(s)	212, 534, 710, 764, 1242, 1616, 2127, 2321, 2412
TscAI	CASTG	6 cut(s)	47, 802, 1630, 1821, 2341, 2588
TseFI	GTSAC	6 cut(s)	36, 1412, 1723, 1904, 2378, 2386
TseI	GCWGC	7 cut(s)	55, 147, 334, 1049, 2267, 2511, 2672
Tsp45I	GTSAC	6 cut(s)	36, 1412, 1723, 1904, 2378, 2386
TspDTI	ATGAA	8 cut(s)	406, 695, 804, 1755, 2101, 2105, 2556, 2694
TspGWI	ACGGA	2 cut(s)	225, 2293
TspRI	CASTG	6 cut(s)	47, 802, 1630, 1821, 2341, 2588
Tth111I	GACNNNGTC	1 cut(s)	1902
Van91I	CCANNNNNTGG	1 cut(s)	1658
Vha464I	CTTAAG	2 cut(s)	1241, 2126
VpaK11BI	GGWCC	7 cut(s)	70, 731, 1342, 1364, 1397, 1661, 1894
VspI	ATTAAT	1 cut(s)	2321
XagI	CCTNNNNNAGG	1 cut(s)	1332
XapI	RAATTY	2 cut(s)	1596, 2106
XceI	RCATGY	2 cut(s)	1083, 1972
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1682
XhoI	CTCGAG	1 cut(s)	472
XmiI	GTMKAC	1 cut(s)	1990
XmnI	GAANNNNTTC	3 cut(s)	356, 431, 722
XspI	CTAG	9 cut(s)	836, 1350, 1377, 1478, 2040, 2231, 2384, 2475, 2724
ZraI	GACGTC	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.