Rh7AG293100

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Forward (+)
31956032 .. 31957146
1115 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG293100.1

Sequence Viewer

Length: 335 bp
ATGTCTTCGCTCGCCTTGATCTACTCCACCGTCGAGTCCGACATTGAAGCTGTTCTTCAGGTTTTCTTTGATTGTAACCCTGACTTCAATTCTGAAATTTCACCTAAGAGCAAGAGACTCCGCTTCGAGCTGCTGTTAATTATGGCGAAGCTTCCGAGTGTTGAGATTAATCCGCAATTCATAACATTTACGCATGTTACTATGGAGTCCAATAAGTACACATGTGTTCGGGAAACAATGCCGCATAATAGTATTGTGATTATTGATATGAGTGTGCTGAATCAACGCCGACTCTGCACTTATGAATCCAAACTCCCAAATCCTTGCTTTGTAAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.

Protein Analysis

111

Amino Acids

12.78

Weight (kDa)

5.61

Isoelectric Point (pI)

62.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 121, 173, 242
AcsI RAATTY 1 cut(s) 96
AcuI CTGAAG 1 cut(s) 41
AfaI GTAC 1 cut(s) 218
AflIII ACRYGT 1 cut(s) 221
AgsI TTSAA 2 cut(s) 47, 88
AluBI AGCT 3 cut(s) 50, 130, 151
AluI AGCT 3 cut(s) 50, 130, 151
Alw26I GTCTC 1 cut(s) 109
ApeKI GCWGC 1 cut(s) 130
ApoI RAATTY 1 cut(s) 96
AseI ATTAAT 1 cut(s) 168
Asp700I GAANNNNTTC 1 cut(s) 51
AsuHPI GGTGA 1 cut(s) 93
BbvI GCAGC 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 109
BisI GCNGC 2 cut(s) 131, 242
BlsI GCNGC 2 cut(s) 132, 243
BseXI GCAGC 1 cut(s) 117
BsgI GTGCAG 1 cut(s) 280
BsmAI GTCTC 1 cut(s) 109
Bsp143I GATC 1 cut(s) 18
BspACI CCGC 3 cut(s) 121, 173, 242
BssMI GATC 1 cut(s) 18
Bst4CI ACNGT 1 cut(s) 31
BstC8I GCNNGC 1 cut(s) 12
BstDEI CTNAG 1 cut(s) 105
BstKTI GATC 1 cut(s) 21
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 1 cut(s) 18
BstMWI GCNNNNNNNGC 1 cut(s) 294
BstNSI RCATGY 2 cut(s) 197, 225
BstV1I GCAGC 1 cut(s) 117
Cac8I GCNNGC 1 cut(s) 12
Csp6I GTAC 1 cut(s) 217
CviAII CATG 2 cut(s) 194, 222
CviJI RGCY 3 cut(s) 50, 130, 151
CviKI_1 RGCY 3 cut(s) 50, 130, 151
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 1 cut(s) 105
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
Eco57I CTGAAG 1 cut(s) 41
FaeI CATG 2 cut(s) 197, 225
FaiI YATR 8 cut(s) 143, 182, 195, 203, 223, 246, 269, 303
FalI AAGNNNNNCTT 2 cut(s) 39, 71
FatI CATG 2 cut(s) 193, 221
Fnu4HI GCNGC 2 cut(s) 131, 242
Fsp4HI GCNGC 2 cut(s) 131, 242
GluI GCNGC 2 cut(s) 131, 242
Hin1II CATG 2 cut(s) 197, 225
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 6 cut(s) 35, 117, 206, 280, 291, 305
HphI GGTGA 1 cut(s) 93
Hpy166II GTNNAC 1 cut(s) 219
Hpy188I TCNGA 3 cut(s) 40, 94, 156
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 1 cut(s) 219
Hpy99I CGWCG 1 cut(s) 35
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4V TGCA 1 cut(s) 297
HpyF10VI GCNNNNNNNGC 1 cut(s) 294
HpyF3I CTNAG 1 cut(s) 105
Hsp92II CATG 2 cut(s) 197, 225
Kzo9I GATC 1 cut(s) 18
LpnPI CCDG 2 cut(s) 44, 93
Lsp1109I GCAGC 1 cut(s) 117
MaeIII GTNAC 2 cut(s) 74, 196
MalI GATC 1 cut(s) 20
MboI GATC 1 cut(s) 18
MboII GAAGA 1 cut(s) 47
MluCI AATT 4 cut(s) 88, 96, 138, 176
MlyI GAGTC 4 cut(s) 44, 111, 215, 285
MmeI TCCRAC 1 cut(s) 63
MroXI GAANNNNTTC 1 cut(s) 51
MseI TTAA 2 cut(s) 137, 168
MwoI GCNNNNNNNGC 1 cut(s) 294
NdeII GATC 1 cut(s) 18
NlaIII CATG 2 cut(s) 197, 225
NspI RCATGY 2 cut(s) 197, 225
PciI ACATGT 1 cut(s) 221
PdmI GAANNNNTTC 1 cut(s) 51
PfeI GAWTC 2 cut(s) 280, 305
PkrI GCNGC 2 cut(s) 132, 243
PleI GAGTC 4 cut(s) 43, 111, 214, 285
PpsI GAGTC 4 cut(s) 43, 111, 214, 285
PscI ACATGT 1 cut(s) 221
PshBI ATTAAT 1 cut(s) 168
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
SaqAI TTAA 2 cut(s) 137, 168
SatI GCNGC 2 cut(s) 131, 242
Sau3AI GATC 1 cut(s) 18
SchI GAGTC 4 cut(s) 44, 111, 215, 285
SetI ASST 5 cut(s) 52, 63, 106, 132, 153
Sse9I AATT 4 cut(s) 88, 96, 138, 176
SsiI CCGC 3 cut(s) 121, 173, 242
TaaI ACNGT 1 cut(s) 31
TaqI TCGA 2 cut(s) 33, 126
TasI AATT 4 cut(s) 88, 96, 138, 176
TatI WGTACW 1 cut(s) 216
TauI GCSGC 1 cut(s) 244
TfiI GAWTC 2 cut(s) 280, 305
Tru1I TTAA 2 cut(s) 137, 168
Tru9I TTAA 2 cut(s) 137, 168
TseI GCWGC 1 cut(s) 130
TspDTI ATGAA 2 cut(s) 169, 318
VspI ATTAAT 1 cut(s) 168
XapI RAATTY 1 cut(s) 96
XceI RCATGY 2 cut(s) 197, 225
XmnI GAANNNNTTC 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.